Wall clock time and date at job start Mon Mar 30 2020 06:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 C 1.47202 * 109.46933 * 186.01667 * 3 2 1 5 5 N 3.43553 * 154.66974 * 349.90095 * 2 1 3 6 6 C 1.52994 * 109.47309 * 306.01793 * 3 2 1 7 7 C 1.52999 * 109.47384 * 300.00011 * 6 3 2 8 8 C 1.50702 * 109.46828 * 66.02238 * 3 2 1 9 9 O 1.21283 * 120.00028 * 357.42893 * 8 3 2 10 10 N 1.34782 * 119.99755 * 177.44000 * 8 3 2 11 11 C 1.46500 * 119.99539 * 185.31509 * 10 8 3 12 12 C 1.50700 * 109.47179 * 269.99282 * 11 10 8 13 13 H 1.07999 * 120.00099 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99991 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00135 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99992 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47227 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47539 * 120.00309 * 16 14 12 19 19 H 1.48503 * 109.47095 * 240.00584 * 16 14 12 20 20 C 1.46495 * 120.00050 * 5.31291 * 10 8 3 21 21 C 1.53003 * 117.49571 * 182.99087 * 20 10 8 22 22 C 1.52995 * 117.50132 * 114.33208 * 20 10 8 23 23 H 1.08995 * 109.47405 * 59.99522 * 1 2 3 24 24 H 1.09000 * 109.46702 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46324 * 299.99413 * 1 2 3 26 26 H 1.09010 * 109.46665 * 240.00674 * 2 1 3 27 27 H 1.08995 * 109.47405 * 120.00478 * 2 1 3 28 28 H 1.08996 * 109.47211 * 60.00176 * 6 3 2 29 29 H 1.09005 * 109.47117 * 179.97438 * 6 3 2 30 30 H 1.09008 * 109.46857 * 299.99896 * 7 6 3 31 31 H 1.09005 * 109.47193 * 59.99802 * 7 6 3 32 32 H 1.09000 * 109.47505 * 180.02562 * 7 6 3 33 33 H 1.09004 * 109.47509 * 29.99858 * 11 10 8 34 34 H 1.09003 * 109.46907 * 149.99835 * 11 10 8 35 35 H 0.97001 * 120.00227 * 179.97438 * 15 14 12 36 36 H 1.08999 * 115.54987 * 328.65534 * 20 10 8 37 37 H 1.09000 * 117.49998 * 359.97438 * 21 20 10 38 38 H 1.09002 * 117.49953 * 145.02276 * 21 20 10 39 39 H 1.09003 * 117.50163 * 214.97907 * 22 20 10 40 40 H 1.09005 * 117.49751 * 359.97178 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5048 1.4450 -0.1455 5 7 4.6353 1.4471 -0.2577 6 6 1.4103 2.2061 -1.1667 7 6 1.7931 1.5299 -2.4847 8 6 1.6630 2.1085 1.2982 9 8 1.0070 1.5055 2.1210 10 7 2.0548 3.3743 1.5448 11 6 1.7896 3.9817 2.8514 12 6 0.4491 4.6697 2.8227 13 1 -0.1460 4.6555 1.9216 14 6 -0.0180 5.3163 3.9473 15 7 0.7064 5.3331 5.0447 16 14 -1.6799 6.1684 3.9121 17 1 -2.2921 6.0043 2.5690 18 1 -2.5680 5.5641 4.9375 19 1 -1.5013 7.6139 4.2018 20 6 2.7457 4.1427 0.5064 21 6 3.2269 5.5487 0.8705 22 6 2.0267 5.3677 -0.0622 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 0.3257 2.2042 -1.0590 29 1 1.7733 3.2339 -1.1664 30 1 2.8778 1.5318 -2.5924 31 1 1.4297 0.5022 -2.4847 32 1 1.3448 2.0741 -3.3159 33 1 1.7841 3.2068 3.6180 34 1 2.5675 4.7110 3.0776 35 1 0.3779 5.7883 5.8358 36 1 3.3642 3.5602 -0.1764 37 1 3.0291 5.9021 1.8824 38 1 4.1617 5.8914 0.4268 39 1 2.1724 5.5913 -1.1191 40 1 1.0394 5.6016 0.3360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044767049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:15 Heat of formation + Delta-G solvation = 20.066959 kcal Electronic energy + Delta-G solvation = -21264.796888 eV Core-core repulsion = 18273.993517 eV Total energy + Delta-G solvation = -2990.803370 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.47628 -37.34588 -36.83651 -35.14710 -33.24657 -32.16556 -30.97973 -28.84740 -26.88776 -24.00310 -22.93029 -22.26264 -21.92087 -20.85674 -19.14554 -17.95801 -16.51594 -16.20586 -15.56843 -14.88644 -14.83361 -14.39316 -14.07588 -13.94294 -13.48282 -13.18654 -12.84432 -12.75009 -12.56548 -12.38952 -12.03073 -11.90326 -11.53905 -11.49750 -11.41193 -11.16303 -11.06623 -10.98622 -10.76489 -10.56847 -10.47930 -10.29082 -10.10908 -10.06334 -9.49557 -8.94265 -8.47628 -7.65493 -6.09054 -4.13588 2.63902 2.74037 3.07648 3.26864 3.35160 3.37888 3.67993 3.94792 4.29130 4.40054 4.60519 4.75406 4.83905 5.15909 5.22424 5.25372 5.29788 5.32945 5.42942 5.47021 5.57517 5.71056 5.76711 5.91011 6.01779 6.04152 6.05015 6.09825 6.15455 6.37225 6.52815 6.66175 6.69565 6.97176 7.33485 7.42602 7.51749 7.86549 8.15546 8.24827 8.76387 8.93498 9.51208 10.99101 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.007094 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.419683 B = 3946.108497 C = 4354.258450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.094 4.094 3 C 0.017 3.983 4 C 0.225 3.775 5 N -0.427 5.427 6 C -0.125 4.125 7 C -0.155 4.155 8 C 0.524 3.476 9 O -0.514 6.514 10 N -0.561 5.561 11 C 0.242 3.758 12 C -0.521 4.521 13 H 0.061 0.939 14 C 0.062 3.938 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.057 3.943 21 C -0.177 4.177 22 C -0.188 4.188 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.263 0.737 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.282 -4.846 -13.669 14.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.133 4.133 3 C 0.010 3.990 4 C -0.093 4.093 5 N -0.103 5.103 6 C -0.163 4.163 7 C -0.212 4.212 8 C 0.307 3.693 9 O -0.389 6.389 10 N -0.291 5.291 11 C 0.124 3.876 12 C -0.560 4.560 13 H 0.079 0.921 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.049 4.049 21 C -0.215 4.215 22 C -0.227 4.227 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.652 -5.099 -13.154 14.355 hybrid contribution -1.182 0.623 0.130 1.343 sum 1.470 -4.476 -13.024 13.850 Atomic orbital electron populations 1.21985 0.93810 1.02140 1.03790 1.21379 0.97936 0.91149 1.02844 1.18774 0.82634 1.00055 0.97572 1.28582 0.94414 0.92986 0.93314 1.81193 1.12049 1.08549 1.08482 1.21931 1.02539 1.00221 0.91648 1.21885 1.01356 1.01328 0.96662 1.19517 0.80976 0.82177 0.86607 1.90681 1.37946 1.63764 1.46512 1.47723 1.54491 1.11591 1.15260 1.19444 0.96713 0.93953 0.77536 1.21399 1.03097 1.33295 0.98171 0.92110 1.24924 0.97492 0.96410 0.95216 1.69934 1.37710 1.43423 1.02206 0.86473 0.83948 0.79003 0.78190 1.19717 1.20921 1.21034 1.21704 1.00311 0.87986 0.94856 1.23337 0.97923 0.97536 1.02682 1.23491 0.99148 1.01901 0.98113 0.92558 0.92582 0.89630 0.91027 0.90470 0.88779 0.89185 0.93022 0.91774 0.91802 0.93762 0.94256 0.92732 0.87126 0.86459 0.89050 0.89248 0.86784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.14 37.16 0.34 -1.67 16 2 C -0.09 -1.22 4.07 -26.73 -0.11 -1.32 16 3 C 0.02 0.25 0.27 -158.45 -0.04 0.20 16 4 C 0.22 3.48 9.77 -20.76 -0.20 3.28 16 5 N -0.43 -7.15 18.46 42.15 0.78 -6.37 16 6 C -0.13 -1.52 4.19 -26.73 -0.11 -1.63 16 7 C -0.16 -1.48 9.28 37.16 0.34 -1.13 16 8 C 0.52 10.27 6.19 -10.98 -0.07 10.20 16 9 O -0.51 -11.73 13.58 5.56 0.08 -11.65 16 10 N -0.56 -11.51 2.78 -167.47 -0.47 -11.97 16 11 C 0.24 6.03 4.66 -5.19 -0.02 6.01 16 12 C -0.52 -13.81 8.70 -34.44 -0.30 -14.11 16 13 H 0.06 1.60 7.21 -52.49 -0.38 1.22 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 16 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 C 0.06 0.97 4.05 -67.93 -0.28 0.70 16 21 C -0.18 -2.90 9.74 -26.69 -0.26 -3.16 16 22 C -0.19 -2.89 9.31 -26.70 -0.25 -3.14 16 23 H 0.06 0.60 6.31 -51.93 -0.33 0.28 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 1.37 5.95 -51.93 -0.31 1.06 16 26 H 0.07 0.74 6.76 -51.92 -0.35 0.39 16 27 H 0.08 1.08 7.96 -51.93 -0.41 0.67 16 28 H 0.09 1.12 6.33 -51.93 -0.33 0.80 16 29 H 0.09 1.13 4.29 -51.93 -0.22 0.91 16 30 H 0.05 0.52 7.23 -51.92 -0.38 0.15 16 31 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.04 1.26 7.50 -51.93 -0.39 0.87 16 34 H 0.04 1.00 5.99 -51.93 -0.31 0.69 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.11 1.72 4.59 -51.93 -0.24 1.49 16 37 H 0.12 2.25 6.11 -51.93 -0.32 1.93 16 38 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.11 2.04 6.93 -51.93 -0.36 1.68 16 LS Contribution 314.42 15.07 4.74 4.74 Total: -1.00 -30.09 314.42 -5.70 -35.79 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.49 Total: 2.55 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.06 Total: -4.19 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 1.05 Total: -43.29 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.09 -5.70 -35.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044767049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.858 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds