Wall clock time and date at job start Mon Mar 30 2020 07:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36011 * 117.00055 * 2 1 4 4 C 1.38503 * 120.08095 * 359.72529 * 3 2 1 5 5 C 1.38283 * 120.01608 * 179.74005 * 4 3 2 6 6 C 1.38256 * 120.18218 * 0.51477 * 5 4 3 7 7 C 1.50698 * 119.92099 * 179.74250 * 6 5 4 8 8 N 1.46904 * 109.47039 * 270.01888 * 7 6 5 9 9 C 1.46894 * 111.00030 * 293.95574 * 8 7 6 10 10 C 1.46902 * 110.99815 * 169.99858 * 8 7 6 11 11 H 1.09002 * 109.47401 * 310.00272 * 10 8 7 12 12 C 1.52994 * 109.46650 * 70.00316 * 10 8 7 13 13 C 1.50703 * 109.46978 * 189.99950 * 10 8 7 14 14 H 1.07998 * 119.99903 * 0.02562 * 13 10 8 15 15 C 1.37872 * 119.99886 * 179.97438 * 13 10 8 16 16 N 1.31515 * 119.99831 * 180.02562 * 15 13 10 17 17 Si 1.86799 * 120.00019 * 0.02562 * 15 13 10 18 18 H 1.48505 * 109.47264 * 89.99826 * 17 15 13 19 19 H 1.48504 * 109.47370 * 209.99538 * 17 15 13 20 20 H 1.48498 * 109.47316 * 329.99640 * 17 15 13 21 21 C 1.38225 * 120.15771 * 359.76223 * 6 5 4 22 22 C 1.38725 * 119.97862 * 359.97438 * 21 6 5 23 23 N 1.39965 * 120.08747 * 180.02562 * 22 21 6 24 24 H 1.09001 * 109.47103 * 300.00352 * 1 2 3 25 25 H 1.09004 * 109.47054 * 59.99856 * 1 2 3 26 26 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99113 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.90657 * 180.25536 * 5 4 3 29 29 H 1.09002 * 109.47088 * 30.02014 * 7 6 5 30 30 H 1.09000 * 109.46901 * 150.02078 * 7 6 5 31 31 H 1.09006 * 109.47429 * 60.00116 * 9 8 7 32 32 H 1.09000 * 109.47215 * 179.97438 * 9 8 7 33 33 H 1.08997 * 109.47194 * 299.99805 * 9 8 7 34 34 H 1.08998 * 109.47441 * 299.99120 * 12 10 8 35 35 H 1.08993 * 109.47572 * 60.00335 * 12 10 8 36 36 H 1.09006 * 109.46939 * 180.02562 * 12 10 8 37 37 H 0.97003 * 119.99536 * 180.02562 * 16 15 13 38 38 H 1.07998 * 120.00804 * 179.97438 * 21 6 5 39 39 H 0.96998 * 120.00341 * 179.97438 * 23 22 21 40 40 H 0.97000 * 120.00077 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2939 2.3745 -0.0057 5 6 1.9230 3.6059 -0.0003 6 6 3.3035 3.6811 0.0001 7 6 3.9831 5.0262 0.0002 8 7 4.2039 5.4633 -1.3848 9 6 5.1649 4.5863 -2.0667 10 6 4.6446 6.8639 -1.4308 11 1 3.9733 7.4761 -0.8286 12 6 6.0666 6.9695 -0.8761 13 6 4.6244 7.3502 -2.8571 14 1 4.3148 6.6855 -3.6499 15 6 5.0003 8.6441 -3.1496 16 7 4.9822 9.0686 -4.3943 17 14 5.5352 9.7940 -1.7782 18 1 7.0021 9.6769 -1.5779 19 1 5.1958 11.1926 -2.1442 20 1 4.8333 9.4268 -0.5222 21 6 4.0620 2.5255 0.0001 22 6 3.4377 1.2867 0.0002 23 7 4.2034 0.1150 0.0007 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2153 2.3193 -0.0107 28 1 1.3344 4.5114 -0.0006 29 1 3.3525 5.7518 0.5141 30 1 4.9413 4.9491 0.5140 31 1 4.7807 3.5663 -2.0792 32 1 5.3097 4.9321 -3.0902 33 1 6.1172 4.6093 -1.5370 34 1 6.0812 6.6178 0.1555 35 1 6.7379 6.3574 -1.4783 36 1 6.3935 8.0088 -0.9098 37 1 5.2470 9.9788 -4.6001 38 1 5.1402 2.5871 0.0000 39 1 3.7656 -0.7505 0.0011 40 1 5.1719 0.1686 0.0006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085132.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:17 Heat of formation + Delta-G solvation = 5.210796 kcal Electronic energy + Delta-G solvation = -20107.103980 eV Core-core repulsion = 17115.656398 eV Total energy + Delta-G solvation = -2991.447582 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.13186 -38.09511 -36.73014 -34.44420 -32.64348 -30.90511 -29.07840 -28.76149 -27.65101 -25.97880 -25.21853 -23.46899 -22.16086 -20.76287 -19.19084 -17.97080 -17.02009 -16.63672 -16.20065 -15.72001 -15.28142 -15.02726 -14.44856 -14.18465 -13.92976 -13.76035 -13.28345 -13.06596 -12.78836 -12.55096 -12.18765 -12.02345 -11.68950 -11.28891 -11.16120 -11.03389 -11.02560 -10.89153 -10.62128 -10.35388 -10.17160 -9.96883 -9.48390 -9.02107 -8.55213 -8.27075 -7.27026 -7.11926 -6.02764 -4.00288 1.57921 1.80964 3.27819 3.29142 3.38077 3.40566 3.95503 4.02341 4.42602 4.89956 4.98664 5.08121 5.08706 5.23085 5.30860 5.33964 5.46387 5.61903 5.69183 5.81338 6.04861 6.14096 6.17684 6.24781 6.28701 6.33283 6.36937 6.56086 6.60039 6.76316 6.93344 6.94947 7.03017 7.21280 7.24745 7.67981 7.72390 7.86599 7.99591 8.13561 8.71119 9.06257 9.59604 11.10514 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.036120 B = 0.004257 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.000473 B = 6576.117083 C = 6770.076512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.327 6.327 3 C 0.039 3.961 4 C -0.161 4.161 5 C -0.118 4.118 6 C -0.046 4.046 7 C 0.088 3.912 8 N -0.515 5.515 9 C 0.031 3.969 10 C 0.180 3.820 11 H 0.039 0.961 12 C -0.186 4.186 13 C -0.498 4.498 14 H 0.082 0.918 15 C 0.069 3.931 16 N -0.901 5.901 17 Si 0.886 3.114 18 H -0.281 1.281 19 H -0.297 1.297 20 H -0.268 1.268 21 C -0.159 4.159 22 C 0.191 3.809 23 N -0.879 5.879 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.093 0.907 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.014 0.986 34 H 0.028 0.972 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.122 0.878 39 H 0.399 0.601 40 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.853 -16.699 11.280 20.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.242 6.242 3 C -0.009 4.009 4 C -0.181 4.181 5 C -0.139 4.139 6 C -0.048 4.048 7 C -0.040 4.040 8 N -0.238 5.238 9 C -0.117 4.117 10 C 0.072 3.928 11 H 0.057 0.943 12 C -0.245 4.245 13 C -0.537 4.537 14 H 0.100 0.900 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.717 3.283 18 H -0.209 1.209 19 H -0.225 1.225 20 H -0.193 1.193 21 C -0.183 4.183 22 C 0.088 3.912 23 N -0.420 5.420 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.111 0.889 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.033 0.967 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.140 0.860 39 H 0.227 0.773 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.231 -16.704 10.901 20.621 hybrid contribution 1.141 0.666 1.028 1.674 sum -4.090 -16.038 11.928 20.401 Atomic orbital electron populations 1.22925 0.78914 1.03172 1.01200 1.85906 1.20863 1.27019 1.90363 1.18358 0.90342 0.84609 1.07589 1.20960 0.99308 0.91928 1.05857 1.20621 0.93946 0.96719 1.02565 1.19563 0.93380 0.94336 0.97494 1.21056 0.98057 0.92692 0.92149 1.62181 1.46431 1.03614 1.11598 1.22340 0.92788 0.96162 1.00448 1.19815 0.89800 0.85040 0.98108 0.94333 1.22827 1.02565 1.00749 0.98344 1.20944 1.43964 0.97589 0.91171 0.90011 1.24914 0.95412 0.97763 0.95176 1.69885 1.48813 1.17521 1.17756 0.86892 0.78687 0.79762 0.82972 1.20862 1.22488 1.19348 1.20338 0.99371 0.89802 1.08780 1.17029 0.87300 0.87686 0.99221 1.42229 1.07928 1.05385 1.86493 0.93045 0.92875 0.88872 0.85885 0.85885 0.90624 0.94887 0.93009 0.90426 0.96726 0.95349 0.92454 0.93773 0.92706 0.85961 0.77300 0.77698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.33 -3.94 9.74 -19.78 -0.19 -4.14 16 3 C 0.04 0.53 6.70 -39.08 -0.26 0.27 16 4 C -0.16 -2.17 9.04 -39.47 -0.36 -2.53 16 5 C -0.12 -1.77 9.69 -39.56 -0.38 -2.15 16 6 C -0.05 -0.73 4.88 -104.62 -0.51 -1.24 16 7 C 0.09 1.54 4.68 -4.97 -0.02 1.51 16 8 N -0.52 -10.75 4.69 -237.73 -1.12 -11.87 16 9 C 0.03 0.60 8.26 60.06 0.50 1.10 16 10 C 0.18 4.26 1.90 -68.87 -0.13 4.13 16 11 H 0.04 0.94 6.99 -51.93 -0.36 0.58 16 12 C -0.19 -4.06 7.92 37.15 0.29 -3.76 16 13 C -0.50 -13.98 8.49 -34.44 -0.29 -14.27 16 14 H 0.08 2.52 7.37 -52.49 -0.39 2.13 16 15 C 0.07 1.97 5.45 -17.82 -0.10 1.88 16 16 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 17 Si 0.89 21.96 24.37 -169.99 -4.14 17.82 16 18 H -0.28 -6.83 6.87 56.52 0.39 -6.44 16 19 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 20 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 21 C -0.16 -2.30 7.81 -39.41 -0.31 -2.61 16 22 C 0.19 2.60 6.77 -83.56 -0.57 2.03 16 23 N -0.88 -9.34 9.09 32.51 0.30 -9.04 16 24 H 0.05 0.39 7.68 -51.93 -0.40 -0.01 16 25 H 0.05 0.43 7.65 -51.93 -0.40 0.04 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.12 1.36 6.30 -52.49 -0.33 1.03 16 28 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.08 1.28 7.87 -51.93 -0.41 0.87 16 30 H 0.03 0.55 7.00 -51.93 -0.36 0.19 16 31 H 0.05 0.92 6.16 -51.93 -0.32 0.60 16 32 H 0.08 1.69 6.76 -51.93 -0.35 1.34 16 33 H 0.01 0.26 6.46 -51.93 -0.34 -0.07 16 34 H 0.03 0.53 6.91 -51.93 -0.36 0.18 16 35 H 0.06 1.23 6.42 -51.93 -0.33 0.90 16 36 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 38 H 0.12 1.64 8.03 -52.49 -0.42 1.21 16 39 H 0.40 3.84 8.19 -40.82 -0.33 3.51 16 40 H 0.40 3.44 8.85 -40.82 -0.36 3.07 16 LS Contribution 310.19 15.07 4.67 4.67 Total: -1.00 -31.51 310.19 -6.52 -38.03 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.66 Total: 5.72 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -1.15 Total: -14.37 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.05 Total: -47.73 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.19 Total: -4.14 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.14 Total: 17.82 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.51 -6.52 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085132.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.238 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds