Wall clock time and date at job start Mon Mar 30 2020 07:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36011 * 117.00055 * 2 1 4 4 C 1.38503 * 120.08095 * 359.72529 * 3 2 1 5 5 C 1.38283 * 120.01608 * 179.74005 * 4 3 2 6 6 C 1.38256 * 120.18218 * 0.51477 * 5 4 3 7 7 C 1.50698 * 119.92099 * 179.74250 * 6 5 4 8 8 N 1.46904 * 109.47039 * 270.01888 * 7 6 5 9 9 C 1.46894 * 111.00030 * 293.95574 * 8 7 6 10 10 C 1.46902 * 110.99815 * 169.99858 * 8 7 6 11 11 H 1.09002 * 109.47401 * 310.00272 * 10 8 7 12 12 C 1.52994 * 109.46650 * 70.00316 * 10 8 7 13 13 C 1.50703 * 109.46978 * 189.99950 * 10 8 7 14 14 H 1.07998 * 119.99903 * 0.02562 * 13 10 8 15 15 C 1.37872 * 119.99886 * 179.97438 * 13 10 8 16 16 N 1.31515 * 119.99831 * 180.02562 * 15 13 10 17 17 Si 1.86799 * 120.00019 * 0.02562 * 15 13 10 18 18 H 1.48505 * 109.47264 * 89.99826 * 17 15 13 19 19 H 1.48504 * 109.47370 * 209.99538 * 17 15 13 20 20 H 1.48498 * 109.47316 * 329.99640 * 17 15 13 21 21 C 1.38225 * 120.15771 * 359.76223 * 6 5 4 22 22 C 1.38725 * 119.97862 * 359.97438 * 21 6 5 23 23 N 1.39965 * 120.08747 * 180.02562 * 22 21 6 24 24 H 1.09001 * 109.47103 * 300.00352 * 1 2 3 25 25 H 1.09004 * 109.47054 * 59.99856 * 1 2 3 26 26 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99113 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.90657 * 180.25536 * 5 4 3 29 29 H 1.09002 * 109.47088 * 30.02014 * 7 6 5 30 30 H 1.09000 * 109.46901 * 150.02078 * 7 6 5 31 31 H 1.09006 * 109.47429 * 60.00116 * 9 8 7 32 32 H 1.09000 * 109.47215 * 179.97438 * 9 8 7 33 33 H 1.08997 * 109.47194 * 299.99805 * 9 8 7 34 34 H 1.08998 * 109.47441 * 299.99120 * 12 10 8 35 35 H 1.08993 * 109.47572 * 60.00335 * 12 10 8 36 36 H 1.09006 * 109.46939 * 180.02562 * 12 10 8 37 37 H 0.97003 * 119.99536 * 180.02562 * 16 15 13 38 38 H 1.07998 * 120.00804 * 179.97438 * 21 6 5 39 39 H 0.96998 * 120.00341 * 179.97438 * 23 22 21 40 40 H 0.97000 * 120.00077 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2939 2.3745 -0.0057 5 6 1.9230 3.6059 -0.0003 6 6 3.3035 3.6811 0.0001 7 6 3.9831 5.0262 0.0002 8 7 4.2039 5.4633 -1.3848 9 6 5.1649 4.5863 -2.0667 10 6 4.6446 6.8639 -1.4308 11 1 3.9733 7.4761 -0.8286 12 6 6.0666 6.9695 -0.8761 13 6 4.6244 7.3502 -2.8571 14 1 4.3148 6.6855 -3.6499 15 6 5.0003 8.6441 -3.1496 16 7 4.9822 9.0686 -4.3943 17 14 5.5352 9.7940 -1.7782 18 1 7.0021 9.6769 -1.5779 19 1 5.1958 11.1926 -2.1442 20 1 4.8333 9.4268 -0.5222 21 6 4.0620 2.5255 0.0001 22 6 3.4377 1.2867 0.0002 23 7 4.2034 0.1150 0.0007 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2153 2.3193 -0.0107 28 1 1.3344 4.5114 -0.0006 29 1 3.3525 5.7518 0.5141 30 1 4.9413 4.9491 0.5140 31 1 4.7807 3.5663 -2.0792 32 1 5.3097 4.9321 -3.0902 33 1 6.1172 4.6093 -1.5370 34 1 6.0812 6.6178 0.1555 35 1 6.7379 6.3574 -1.4783 36 1 6.3935 8.0088 -0.9098 37 1 5.2470 9.9788 -4.6001 38 1 5.1402 2.5871 0.0000 39 1 3.7656 -0.7505 0.0011 40 1 5.1719 0.1686 0.0006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063085132.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:16 Heat of formation + Delta-G solvation = -18.431438 kcal Electronic energy + Delta-G solvation = -20108.129184 eV Core-core repulsion = 17115.656398 eV Total energy + Delta-G solvation = -2992.472786 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.14128 -39.42536 -37.99241 -35.52862 -34.58021 -32.43017 -30.56704 -29.76291 -28.63683 -27.27392 -27.14959 -25.00868 -23.17286 -22.04816 -20.87685 -18.91116 -18.66187 -17.97786 -17.42705 -16.90914 -16.55474 -16.20128 -16.00395 -15.58282 -15.25022 -14.94606 -14.70841 -14.42986 -14.12674 -14.00189 -13.83917 -13.36847 -13.03901 -12.82424 -12.77569 -12.51863 -12.21833 -12.03640 -11.89743 -11.82337 -11.71395 -11.46447 -11.33035 -11.03758 -10.72558 -9.35469 -8.84474 -8.24394 -8.11053 -6.26645 0.50349 0.72455 1.32028 1.38036 1.48142 2.34941 2.45352 2.86412 3.08975 3.10174 3.53899 3.95265 4.01090 4.26489 4.43768 4.45840 4.46384 4.49108 4.52321 4.57575 4.65283 4.67147 4.75424 4.79655 4.85833 4.90492 5.02044 5.10706 5.17209 5.26060 5.44634 5.51409 5.66178 5.87439 5.91823 6.09222 6.32775 6.46754 6.74893 6.78575 6.80022 7.08929 7.37898 8.92813 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.036120 B = 0.004257 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.000473 B = 6576.117083 C = 6770.076512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.335 6.335 3 C 0.033 3.967 4 C -0.163 4.163 5 C -0.134 4.134 6 C -0.063 4.063 7 C 0.093 3.907 8 N -0.534 5.534 9 C 0.041 3.959 10 C 0.183 3.817 11 H 0.035 0.965 12 C -0.180 4.180 13 C -0.500 4.500 14 H 0.035 0.965 15 C 0.010 3.990 16 N -0.951 5.951 17 Si 0.951 3.049 18 H -0.269 1.269 19 H -0.300 1.300 20 H -0.247 1.247 21 C -0.166 4.166 22 C 0.185 3.815 23 N -0.868 5.868 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.118 0.882 27 H 0.144 0.856 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.029 0.971 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.132 0.868 39 H 0.405 0.595 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.768 -17.993 13.716 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.250 6.250 3 C -0.015 4.015 4 C -0.182 4.182 5 C -0.155 4.155 6 C -0.065 4.065 7 C -0.034 4.034 8 N -0.257 5.257 9 C -0.107 4.107 10 C 0.075 3.925 11 H 0.053 0.947 12 C -0.239 4.239 13 C -0.538 4.538 14 H 0.054 0.946 15 C -0.186 4.186 16 N -0.592 5.592 17 Si 0.778 3.222 18 H -0.195 1.195 19 H -0.228 1.228 20 H -0.171 1.171 21 C -0.189 4.189 22 C 0.080 3.920 23 N -0.410 5.410 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.136 0.864 27 H 0.162 0.838 28 H 0.139 0.861 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.149 0.851 39 H 0.234 0.766 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -5.142 -18.051 13.358 23.037 hybrid contribution 0.998 0.872 0.213 1.342 sum -4.143 -17.179 13.571 22.282 Atomic orbital electron populations 1.23220 0.77018 1.05114 1.01737 1.85902 1.22817 1.26145 1.90088 1.18546 0.90702 0.85280 1.06960 1.21164 1.00487 0.91357 1.05166 1.20724 0.93928 0.97409 1.03413 1.19476 0.93772 0.93903 0.99314 1.21043 0.98840 0.93680 0.89818 1.62039 1.46816 1.02446 1.14358 1.22203 0.93466 0.96505 0.98524 1.19605 0.91200 0.86730 0.94975 0.94682 1.22690 1.00656 1.00366 1.00184 1.21180 1.42877 0.97078 0.92696 0.94627 1.25771 0.95633 0.99613 0.97605 1.70048 1.50741 1.18145 1.20316 0.85832 0.79018 0.76945 0.80395 1.19502 1.22775 1.17071 1.20394 0.99790 0.89738 1.09024 1.17170 0.87798 0.88295 0.98690 1.42205 1.08441 1.04841 1.85534 0.92116 0.92670 0.86360 0.83821 0.86055 0.90488 0.93682 0.91377 0.93888 0.95233 0.92009 0.92650 0.94560 0.92656 0.85055 0.76591 0.76530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.33 -7.29 9.74 -93.68 -0.91 -8.20 16 3 C 0.03 0.85 6.70 22.59 0.15 1.00 16 4 C -0.16 -4.11 9.04 22.34 0.20 -3.91 16 5 C -0.13 -3.88 9.69 22.28 0.22 -3.66 16 6 C -0.06 -1.91 4.88 -19.86 -0.10 -2.01 16 7 C 0.09 3.09 4.68 85.56 0.40 3.49 16 8 N -0.53 -21.98 4.69 -906.04 -4.25 -26.23 16 9 C 0.04 1.59 8.26 127.69 1.06 2.65 16 10 C 0.18 8.54 1.90 44.17 0.08 8.62 16 11 H 0.04 1.67 6.99 -2.39 -0.02 1.65 16 12 C -0.18 -7.43 7.92 71.98 0.57 -6.86 16 13 C -0.50 -28.79 8.49 25.60 0.22 -28.57 16 14 H 0.04 2.32 7.37 -2.91 -0.02 2.30 16 15 C 0.01 0.61 5.45 84.65 0.46 1.07 16 16 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 17 Si 0.95 45.00 24.37 68.60 1.67 46.67 16 18 H -0.27 -12.11 6.87 99.48 0.68 -11.43 16 19 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 20 H -0.25 -10.74 6.53 99.48 0.65 -10.09 16 21 C -0.17 -4.48 7.81 22.38 0.17 -4.30 16 22 C 0.19 4.67 6.77 38.22 0.26 4.93 16 23 N -0.87 -16.45 9.09 -51.05 -0.46 -16.91 16 24 H 0.06 0.76 7.68 -2.39 -0.02 0.74 16 25 H 0.05 0.77 7.65 -2.38 -0.02 0.75 16 26 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.14 2.89 6.30 -2.91 -0.02 2.87 16 28 H 0.12 3.44 8.06 -2.91 -0.02 3.41 16 29 H 0.08 2.49 7.87 -2.39 -0.02 2.47 16 30 H 0.05 1.38 7.00 -2.39 -0.02 1.36 16 31 H 0.07 2.38 6.16 -2.38 -0.01 2.37 16 32 H 0.04 1.93 6.76 -2.39 -0.02 1.92 16 33 H 0.03 1.04 6.46 -2.39 -0.02 1.02 16 34 H 0.06 2.13 6.91 -2.39 -0.02 2.11 16 35 H 0.05 2.27 6.42 -2.39 -0.02 2.26 16 36 H 0.04 1.55 3.27 -2.38 -0.01 1.54 16 37 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 38 H 0.13 3.21 8.03 -2.91 -0.02 3.18 16 39 H 0.41 6.85 8.19 -92.71 -0.76 6.09 16 40 H 0.41 6.07 8.85 -92.71 -0.82 5.25 16 Total: -1.00 -68.97 310.19 0.56 -68.41 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -0.59 Total: 22.21 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 4.81 Total: -26.10 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -4.42 Total: -102.98 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.91 Total: -8.20 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.67 Total: 46.67 kcal Total: -68.97 0.56 -68.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085132.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.976 kcal (2) G-P(sol) polarization free energy of solvation -68.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds