Wall clock time and date at job start Mon Mar 30 2020 07:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36019 * 116.99714 * 2 1 4 4 C 1.38502 * 120.07945 * 359.97438 * 3 2 1 5 5 C 1.38290 * 120.01629 * 180.02562 * 4 3 2 6 6 C 1.38250 * 120.18064 * 0.27749 * 5 4 3 7 7 C 1.50704 * 119.92123 * 179.72143 * 6 5 4 8 8 N 1.46899 * 109.46667 * 90.00061 * 7 6 5 9 9 C 1.46900 * 110.99901 * 66.05120 * 8 7 6 10 10 C 1.46903 * 110.99662 * 190.00103 * 8 7 6 11 11 H 1.09000 * 109.46800 * 55.00019 * 10 8 7 12 12 C 1.52998 * 109.47117 * 295.00468 * 10 8 7 13 13 C 1.50691 * 109.47185 * 174.99816 * 10 8 7 14 14 H 1.08004 * 120.00385 * 0.02562 * 13 10 8 15 15 C 1.37876 * 120.00182 * 179.97438 * 13 10 8 16 16 N 1.31519 * 120.00188 * 0.02562 * 15 13 10 17 17 Si 1.86806 * 120.00152 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47088 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47067 * 120.00359 * 17 15 13 20 20 H 1.48499 * 109.47039 * 240.00306 * 17 15 13 21 21 C 1.38229 * 120.16118 * 359.44626 * 6 5 4 22 22 C 1.38729 * 119.97617 * 0.55496 * 21 6 5 23 23 N 1.39960 * 120.08956 * 179.74757 * 22 21 6 24 24 H 1.08998 * 109.47144 * 300.00114 * 1 2 3 25 25 H 1.09001 * 109.47647 * 60.00050 * 1 2 3 26 26 H 1.08994 * 109.47080 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99013 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.90657 * 179.97438 * 5 4 3 29 29 H 1.08997 * 109.47242 * 209.99953 * 7 6 5 30 30 H 1.09001 * 109.46658 * 330.00089 * 7 6 5 31 31 H 1.08997 * 109.47542 * 59.99744 * 9 8 7 32 32 H 1.09008 * 109.46732 * 179.97438 * 9 8 7 33 33 H 1.09001 * 109.47068 * 299.99291 * 9 8 7 34 34 H 1.09005 * 109.47121 * 180.02562 * 12 10 8 35 35 H 1.09009 * 109.46993 * 299.99774 * 12 10 8 36 36 H 1.08999 * 109.47582 * 59.99621 * 12 10 8 37 37 H 0.96995 * 120.00225 * 179.97438 * 16 15 13 38 38 H 1.07997 * 120.01039 * 180.27435 * 21 6 5 39 39 H 0.97001 * 120.00527 * 179.97438 * 23 22 21 40 40 H 0.97006 * 120.00203 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.2936 2.3745 -0.0005 5 6 1.9227 3.6061 -0.0011 6 6 3.3032 3.6813 -0.0069 7 6 3.9827 5.0265 -0.0138 8 7 4.2090 5.4677 1.3690 9 6 5.1729 4.5928 2.0497 10 6 4.6498 6.8685 1.4091 11 1 3.9275 7.4918 0.8820 12 6 6.0178 6.9921 0.7351 13 6 4.7531 7.3218 2.8425 14 1 4.5155 6.6377 3.6437 15 6 5.1520 8.6096 3.1312 16 7 5.4419 9.4426 2.1556 17 14 5.2807 9.1713 4.9082 18 1 4.9034 8.0530 5.8094 19 1 6.6766 9.5886 5.1955 20 1 4.3650 10.3187 5.1322 21 6 4.0617 2.5258 -0.0006 22 6 3.4375 1.2869 -0.0001 23 7 4.2033 0.1153 0.0009 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2150 2.3193 -0.0005 28 1 1.3340 4.5115 -0.0019 29 1 4.9388 4.9479 -0.5312 30 1 3.3500 5.7504 -0.5273 31 1 6.1231 4.6143 1.5160 32 1 5.3224 4.9423 3.0713 33 1 4.7888 3.5729 2.0668 34 1 6.3451 8.0314 0.7652 35 1 6.7402 6.3686 1.2622 36 1 5.9431 6.6642 -0.3017 37 1 5.7221 10.3487 2.3588 38 1 5.1400 2.5874 -0.0007 39 1 3.7656 -0.7503 0.0016 40 1 5.1719 0.1689 0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063085133.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:19 Heat of formation + Delta-G solvation = -3.558634 kcal Electronic energy + Delta-G solvation = -20054.866052 eV Core-core repulsion = 17063.038199 eV Total energy + Delta-G solvation = -2991.827853 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.07727 -37.96233 -36.55234 -34.37751 -32.70433 -30.57225 -28.74764 -28.31909 -27.57960 -25.92725 -25.09849 -23.39074 -22.10227 -20.75483 -19.10119 -17.92291 -16.96570 -16.36785 -15.90439 -15.68876 -15.14706 -14.96864 -14.26841 -14.03462 -13.97697 -13.63663 -13.00472 -12.99677 -12.77033 -12.39418 -11.97459 -11.56801 -11.20978 -11.12157 -10.99237 -10.91308 -10.83611 -10.73772 -10.52736 -10.37198 -10.24392 -9.96848 -9.73440 -8.82705 -8.35563 -8.20871 -7.11020 -7.02751 -5.97443 -4.00660 1.63890 1.86736 3.32409 3.32843 3.40251 3.45300 4.00951 4.07991 4.46068 4.94008 5.05573 5.10401 5.24346 5.33963 5.36146 5.40292 5.52212 5.69102 5.80042 5.89135 6.19572 6.26665 6.32514 6.39854 6.48623 6.62851 6.73469 6.88060 6.96422 7.01140 7.10097 7.18321 7.27091 7.54602 7.76686 7.76975 7.88523 7.90861 8.17730 8.44427 8.65684 9.06006 9.64256 11.09711 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.032743 B = 0.004122 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.935863 B = 6791.891664 C = 6963.861457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.327 6.327 3 C 0.037 3.963 4 C -0.162 4.162 5 C -0.119 4.119 6 C -0.044 4.044 7 C 0.091 3.909 8 N -0.527 5.527 9 C 0.033 3.967 10 C 0.209 3.791 11 H 0.039 0.961 12 C -0.172 4.172 13 C -0.497 4.497 14 H 0.063 0.937 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.285 1.285 21 C -0.159 4.159 22 C 0.190 3.810 23 N -0.879 5.879 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.092 0.908 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.013 0.987 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.029 0.971 36 H 0.007 0.993 37 H 0.259 0.741 38 H 0.122 0.878 39 H 0.399 0.601 40 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.840 -16.749 -5.994 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.242 6.242 3 C -0.011 4.011 4 C -0.181 4.181 5 C -0.140 4.140 6 C -0.045 4.045 7 C -0.037 4.037 8 N -0.250 5.250 9 C -0.115 4.115 10 C 0.103 3.897 11 H 0.057 0.943 12 C -0.232 4.232 13 C -0.535 4.535 14 H 0.081 0.919 15 C -0.143 4.143 16 N -0.535 5.535 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.183 4.183 22 C 0.087 3.913 23 N -0.421 5.421 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.140 0.860 28 H 0.141 0.859 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.048 0.952 36 H 0.026 0.974 37 H 0.069 0.931 38 H 0.140 0.860 39 H 0.226 0.774 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.188 -16.716 -5.759 18.732 hybrid contribution 0.869 0.321 0.525 1.064 sum -5.319 -16.394 -5.235 18.013 Atomic orbital electron populations 1.22910 0.78999 1.03106 1.01167 1.85902 1.20795 1.27066 1.90427 1.18347 0.90332 0.84566 1.07865 1.20952 0.99229 0.91956 1.05958 1.20624 0.94001 0.96649 1.02711 1.19658 0.93357 0.94585 0.96930 1.21000 0.97987 0.92221 0.92506 1.62366 1.46174 1.04824 1.11678 1.22282 0.93123 0.95948 1.00196 1.19340 0.91335 0.82350 0.96663 0.94281 1.22406 1.01075 1.04091 0.95583 1.21172 1.43944 0.96759 0.91650 0.91876 1.24925 0.95565 0.96644 0.97198 1.69898 1.46764 1.05927 1.30907 0.86484 0.77439 0.78643 0.85101 1.19757 1.21243 1.21085 1.20356 0.99404 0.89794 1.08740 1.17036 0.87285 0.87683 0.99269 1.42226 1.07918 1.05371 1.86566 0.92935 0.93065 0.88925 0.85970 0.85933 0.94871 0.90764 0.96831 0.90971 0.93495 0.89393 0.95165 0.97364 0.93129 0.85978 0.77350 0.77713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.33 -4.05 9.74 -19.80 -0.19 -4.25 16 3 C 0.04 0.52 6.70 -39.08 -0.26 0.26 16 4 C -0.16 -2.25 9.04 -39.47 -0.36 -2.60 16 5 C -0.12 -1.86 9.69 -39.56 -0.38 -2.24 16 6 C -0.04 -0.73 4.89 -104.62 -0.51 -1.24 16 7 C 0.09 1.70 4.55 -4.97 -0.02 1.67 16 8 N -0.53 -11.50 4.73 -237.73 -1.13 -12.62 16 9 C 0.03 0.67 8.36 60.06 0.50 1.17 16 10 C 0.21 5.28 2.34 -68.87 -0.16 5.12 16 11 H 0.04 1.08 8.03 -51.93 -0.42 0.66 16 12 C -0.17 -4.18 8.27 37.16 0.31 -3.87 16 13 C -0.50 -13.66 7.88 -34.44 -0.27 -13.93 16 14 H 0.06 1.75 6.77 -52.48 -0.36 1.40 16 15 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 16 N -0.90 -25.55 11.32 55.43 0.63 -24.93 16 17 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 C -0.16 -2.42 7.79 -39.40 -0.31 -2.73 16 22 C 0.19 2.69 6.77 -83.56 -0.57 2.13 16 23 N -0.88 -9.73 9.09 32.51 0.30 -9.43 16 24 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.12 1.39 6.30 -52.49 -0.33 1.06 16 28 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.03 0.62 6.88 -51.93 -0.36 0.26 16 30 H 0.07 1.38 7.94 -51.93 -0.41 0.96 16 31 H 0.01 0.27 6.51 -51.93 -0.34 -0.07 16 32 H 0.07 1.58 6.41 -51.92 -0.33 1.24 16 33 H 0.05 0.87 6.15 -51.93 -0.32 0.55 16 34 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 35 H 0.03 0.71 6.48 -51.92 -0.34 0.37 16 36 H 0.01 0.17 6.75 -51.93 -0.35 -0.19 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.12 1.75 8.01 -52.49 -0.42 1.33 16 39 H 0.40 3.98 8.19 -40.82 -0.33 3.65 16 40 H 0.40 3.62 8.85 -40.82 -0.36 3.26 16 LS Contribution 316.32 15.07 4.77 4.77 Total: -1.00 -30.01 316.32 -7.54 -37.55 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.76 Total: 5.96 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -1.14 Total: -13.49 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.20 Total: -46.98 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.19 Total: -4.25 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.01 -7.54 -37.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063085133.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.989 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds