Wall clock time and date at job start Mon Mar 30 2020 06:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 N 1.46899 * 109.47163 * 120.00271 * 2 1 3 5 5 C 1.46898 * 110.99771 * 85.00049 * 4 2 1 6 6 C 1.50705 * 109.46888 * 179.97438 * 5 4 2 7 7 C 1.38253 * 119.55198 * 95.00054 * 6 5 4 8 8 C 1.38538 * 119.21773 * 179.97438 * 7 6 5 9 9 C 1.39136 * 118.37498 * 0.02562 * 8 7 6 10 10 O 1.35916 * 120.47310 * 180.02562 * 9 8 7 11 11 C 1.42892 * 117.00279 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47694 * 179.97438 * 11 10 9 13 13 C 1.50692 * 109.47250 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00433 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99914 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99642 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00022 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46883 * 90.00405 * 17 15 13 19 19 H 1.48501 * 109.47210 * 210.00320 * 17 15 13 20 20 H 1.48493 * 109.47434 * 330.00265 * 17 15 13 21 21 C 1.38698 * 119.05481 * 0.02562 * 9 8 7 22 22 N 1.31843 * 119.55765 * 274.72968 * 6 5 4 23 23 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.00901 * 110.99931 * 208.95582 * 4 2 1 31 31 H 1.08993 * 109.47394 * 299.99882 * 5 4 2 32 32 H 1.09003 * 109.47121 * 60.00162 * 5 4 2 33 33 H 1.08000 * 120.39444 * 359.95802 * 7 6 5 34 34 H 1.08003 * 120.81033 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.46886 * 299.99994 * 11 10 9 36 36 H 1.09009 * 109.47269 * 59.99540 * 11 10 9 37 37 H 1.09005 * 109.46780 * 299.99770 * 12 11 10 38 38 H 1.09000 * 109.46858 * 59.99388 * 12 11 10 39 39 H 0.97004 * 119.99545 * 179.97438 * 16 15 13 40 40 H 1.08007 * 119.65885 * 180.02562 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 -2.1438 0.9805 6 6 2.5886 -2.8187 2.2293 7 6 1.6848 -3.3259 3.1444 8 6 2.1576 -3.9454 4.2897 9 6 3.5339 -4.0322 4.4744 10 8 4.0443 -4.6316 5.5824 11 6 5.4678 -4.6790 5.6969 12 6 5.8517 -5.3849 6.9990 13 6 7.3529 -5.4354 7.1193 14 1 7.9716 -5.0072 6.3444 15 6 7.9368 -6.0282 8.2188 16 7 7.1835 -6.5500 9.1621 17 14 9.7978 -6.0914 8.3677 18 1 10.2791 -4.8785 9.0765 19 1 10.1923 -7.3013 9.1330 20 1 10.4013 -6.1447 7.0120 21 6 4.3777 -3.4984 3.5117 22 7 3.8872 -2.9222 2.4320 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 2.9174 -0.3307 1.4847 31 1 1.0872 -2.5187 0.7424 32 1 2.7589 -2.3575 0.1529 33 1 0.6227 -3.2399 2.9685 34 1 1.4746 -4.3511 5.0214 35 1 5.8824 -5.2266 4.8505 36 1 5.8659 -3.6642 5.7032 37 1 5.4372 -4.8368 7.8452 38 1 5.4536 -6.3996 6.9931 39 1 7.5943 -6.9674 9.9354 40 1 5.4477 -3.5607 3.6450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094210419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:34 Heat of formation + Delta-G solvation = -23.036675 kcal Electronic energy + Delta-G solvation = -18856.796360 eV Core-core repulsion = 15864.123876 eV Total energy + Delta-G solvation = -2992.672484 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.43852 -38.19468 -37.13397 -33.52199 -32.60360 -32.24685 -30.36206 -29.20464 -27.54245 -25.42690 -25.10457 -23.32114 -21.62314 -20.91335 -20.79150 -17.93921 -16.72723 -16.28946 -16.08602 -15.85221 -15.53410 -15.11778 -14.59727 -14.54235 -14.10308 -13.49020 -13.29000 -12.81110 -12.73347 -12.70810 -12.43454 -12.35496 -12.28141 -11.83791 -11.59136 -11.42007 -11.12941 -11.05832 -10.95675 -10.68189 -10.07334 -9.76653 -9.50113 -9.40340 -9.24130 -8.67042 -8.48323 -8.06401 -6.13620 -4.18528 1.26088 1.42238 3.25937 3.31886 3.34594 3.64287 3.71657 4.16925 4.37381 4.45664 4.63408 4.73437 4.84946 4.90420 5.06539 5.07580 5.23024 5.32041 5.37469 5.46733 5.56458 5.57902 5.59151 5.64102 5.71506 5.87047 5.92406 5.94058 6.01639 6.14956 6.26453 6.55761 6.67365 6.82461 7.17006 7.41161 7.58040 7.70787 7.92582 8.08495 8.18968 8.86918 9.46127 10.97903 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.040248 B = 0.002861 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.524617 B = 9784.399851 C =10252.499517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.077 3.923 3 C -0.155 4.155 4 N -0.682 5.682 5 C 0.121 3.879 6 C 0.070 3.930 7 C -0.110 4.110 8 C -0.122 4.122 9 C 0.099 3.901 10 O -0.309 6.309 11 C 0.061 3.939 12 C 0.026 3.974 13 C -0.528 4.528 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.013 3.987 22 N -0.447 5.447 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.347 0.653 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.264 0.736 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.528 10.935 -17.103 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 C -0.212 4.212 4 N -0.315 5.315 5 C -0.009 4.009 6 C -0.069 4.069 7 C -0.131 4.131 8 C -0.148 4.148 9 C 0.050 3.950 10 O -0.220 6.220 11 C -0.013 4.013 12 C -0.011 4.011 13 C -0.566 4.566 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.527 5.527 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.145 4.145 22 N -0.157 5.157 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.166 0.834 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -12.647 11.044 -17.071 23.944 hybrid contribution 1.440 -0.497 0.231 1.541 sum -11.207 10.547 -16.840 22.813 Atomic orbital electron populations 1.21804 0.94541 1.01808 1.01640 1.21521 0.96081 0.94319 0.91326 1.21970 1.00950 0.95771 1.02534 1.60575 1.34077 1.02814 1.34010 1.20660 1.00068 0.87530 0.92620 1.20785 0.88801 1.00044 0.97252 1.21682 1.00820 0.97199 0.93375 1.20963 0.92928 1.01972 0.98984 1.20252 0.93818 0.92752 0.88215 1.86202 1.26784 1.71930 1.37112 1.23433 0.74600 1.00751 1.02503 1.19127 0.96402 0.96164 0.89423 1.20960 0.90598 1.38741 1.06285 0.92278 1.24993 0.98642 0.95014 0.95533 1.69976 1.35299 1.37714 1.09732 0.86473 0.84887 0.77675 0.78281 1.20457 1.21034 1.19726 1.22945 1.00665 1.00094 0.90830 1.67250 1.15085 1.13084 1.20286 0.91936 0.92752 0.92821 0.93889 0.91683 0.92675 0.91971 0.83405 0.89834 0.93722 0.84604 0.84142 0.92820 0.92799 0.95318 0.95331 0.92662 0.82204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.41 37.16 0.35 -0.66 16 2 C 0.08 0.62 3.22 -67.71 -0.22 0.40 16 3 C -0.15 -1.09 9.18 37.16 0.34 -0.74 16 4 N -0.68 -6.81 6.30 -107.99 -0.68 -7.49 16 5 C 0.12 1.26 5.79 -4.97 -0.03 1.23 16 6 C 0.07 0.93 6.29 -82.58 -0.52 0.41 16 7 C -0.11 -1.38 9.71 -39.47 -0.38 -1.77 16 8 C -0.12 -1.76 10.13 -39.14 -0.40 -2.16 16 9 C 0.10 1.69 6.71 -39.08 -0.26 1.43 16 10 O -0.31 -6.15 10.15 -19.48 -0.20 -6.34 16 11 C 0.06 1.27 4.69 37.16 0.17 1.44 16 12 C 0.03 0.67 5.34 -27.89 -0.15 0.52 16 13 C -0.53 -14.52 9.11 -34.44 -0.31 -14.84 16 14 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 17 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 C 0.01 0.22 10.22 -17.37 -0.18 0.04 16 22 N -0.45 -6.90 10.27 -9.35 -0.10 -6.99 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.39 7.45 -51.93 -0.39 0.00 16 26 H 0.04 0.34 7.80 -51.93 -0.40 -0.06 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.39 8.12 -51.93 -0.42 -0.03 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.35 3.72 8.34 -39.29 -0.33 3.39 16 31 H 0.08 0.74 7.33 -51.93 -0.38 0.36 16 32 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 33 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 34 H 0.14 1.80 8.06 -52.48 -0.42 1.37 16 35 H 0.05 1.06 7.68 -51.93 -0.40 0.66 16 36 H 0.05 1.06 7.68 -51.92 -0.40 0.66 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.16 2.52 6.32 -52.48 -0.33 2.19 16 LS Contribution 335.93 15.07 5.06 5.06 Total: -1.00 -29.83 335.93 -8.27 -38.10 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.39 Total: 0.16 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -1.68 Total: -13.10 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: -0.04 Total: -39.98 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.20 Total: -6.34 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.83 -8.27 -38.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094210419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.059 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds