Wall clock time and date at job start Mon Mar 30 2020 06:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 N 1.46899 * 109.47163 * 120.00271 * 2 1 3 5 5 C 1.46898 * 110.99771 * 85.00049 * 4 2 1 6 6 C 1.50705 * 109.46888 * 179.97438 * 5 4 2 7 7 C 1.38253 * 119.55198 * 95.00054 * 6 5 4 8 8 C 1.38538 * 119.21773 * 179.97438 * 7 6 5 9 9 C 1.39136 * 118.37498 * 0.02562 * 8 7 6 10 10 O 1.35916 * 120.47310 * 180.02562 * 9 8 7 11 11 C 1.42892 * 117.00279 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47694 * 179.97438 * 11 10 9 13 13 C 1.50692 * 109.47250 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00433 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99914 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99642 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00022 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46883 * 90.00405 * 17 15 13 19 19 H 1.48501 * 109.47210 * 210.00320 * 17 15 13 20 20 H 1.48493 * 109.47434 * 330.00265 * 17 15 13 21 21 C 1.38698 * 119.05481 * 0.02562 * 9 8 7 22 22 N 1.31843 * 119.55765 * 274.72968 * 6 5 4 23 23 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 24 24 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 27 27 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 28 28 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.00901 * 110.99931 * 208.95582 * 4 2 1 31 31 H 1.08993 * 109.47394 * 299.99882 * 5 4 2 32 32 H 1.09003 * 109.47121 * 60.00162 * 5 4 2 33 33 H 1.08000 * 120.39444 * 359.95802 * 7 6 5 34 34 H 1.08003 * 120.81033 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.46886 * 299.99994 * 11 10 9 36 36 H 1.09009 * 109.47269 * 59.99540 * 11 10 9 37 37 H 1.09005 * 109.46780 * 299.99770 * 12 11 10 38 38 H 1.09000 * 109.46858 * 59.99388 * 12 11 10 39 39 H 0.97004 * 119.99545 * 179.97438 * 16 15 13 40 40 H 1.08007 * 119.65885 * 180.02562 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 -2.1438 0.9805 6 6 2.5886 -2.8187 2.2293 7 6 1.6848 -3.3259 3.1444 8 6 2.1576 -3.9454 4.2897 9 6 3.5339 -4.0322 4.4744 10 8 4.0443 -4.6316 5.5824 11 6 5.4678 -4.6790 5.6969 12 6 5.8517 -5.3849 6.9990 13 6 7.3529 -5.4354 7.1193 14 1 7.9716 -5.0072 6.3444 15 6 7.9368 -6.0282 8.2188 16 7 7.1835 -6.5500 9.1621 17 14 9.7978 -6.0914 8.3677 18 1 10.2791 -4.8785 9.0765 19 1 10.1923 -7.3013 9.1330 20 1 10.4013 -6.1447 7.0120 21 6 4.3777 -3.4984 3.5117 22 7 3.8872 -2.9222 2.4320 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 2.9174 -0.3307 1.4847 31 1 1.0872 -2.5187 0.7424 32 1 2.7589 -2.3575 0.1529 33 1 0.6227 -3.2399 2.9685 34 1 1.4746 -4.3511 5.0214 35 1 5.8824 -5.2266 4.8505 36 1 5.8659 -3.6642 5.7032 37 1 5.4372 -4.8368 7.8452 38 1 5.4536 -6.3996 6.9931 39 1 7.5943 -6.9674 9.9354 40 1 5.4477 -3.5607 3.6450 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094210419.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:34 Heat of formation + Delta-G solvation = -42.282062 kcal Electronic energy + Delta-G solvation = -18857.630903 eV Core-core repulsion = 15864.123876 eV Total energy + Delta-G solvation = -2993.507027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.65065 -39.46920 -37.96780 -35.52892 -33.60118 -33.42528 -32.11120 -30.31670 -28.10384 -27.19721 -26.15226 -24.75406 -22.77787 -22.59755 -21.42842 -19.44429 -18.21309 -17.84271 -17.21777 -17.09227 -16.59015 -16.50173 -16.00497 -15.48844 -15.04546 -14.75222 -14.66570 -14.33025 -13.99818 -13.69066 -13.56347 -13.32692 -13.16899 -12.96787 -12.88829 -12.75425 -12.51371 -12.34989 -12.03328 -11.80702 -11.69822 -11.67617 -11.44607 -10.68699 -10.59769 -10.46842 -9.49723 -9.27130 -8.27469 -6.40789 0.11695 0.25834 1.41110 1.42899 1.54031 2.17833 2.45370 2.65961 3.07323 3.23424 3.48170 3.69759 3.74600 3.98741 4.07830 4.20613 4.23749 4.26257 4.38495 4.47960 4.57268 4.58320 4.68160 4.75135 4.85800 4.99351 4.99901 5.03354 5.06896 5.15366 5.30673 5.31548 5.45780 5.46773 5.54824 5.70839 6.05261 6.09710 6.34648 6.36869 6.73903 6.93573 7.29345 8.85536 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.040248 B = 0.002861 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.524617 B = 9784.399851 C =10252.499517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.075 3.925 3 C -0.152 4.152 4 N -0.687 5.687 5 C 0.124 3.876 6 C 0.074 3.926 7 C -0.101 4.101 8 C -0.120 4.120 9 C 0.067 3.933 10 O -0.329 6.329 11 C 0.080 3.920 12 C 0.029 3.971 13 C -0.546 4.546 14 H 0.071 0.929 15 C 0.002 3.998 16 N -0.930 5.930 17 Si 0.974 3.026 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.260 1.260 21 C 0.004 3.996 22 N -0.462 5.462 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.341 0.659 31 H 0.106 0.894 32 H 0.043 0.957 33 H 0.174 0.826 34 H 0.155 0.845 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.000 1.000 38 H 0.001 0.999 39 H 0.267 0.733 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.997 11.935 -18.992 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.034 4.034 3 C -0.210 4.210 4 N -0.320 5.320 5 C -0.005 4.005 6 C -0.065 4.065 7 C -0.121 4.121 8 C -0.147 4.147 9 C 0.019 3.981 10 O -0.242 6.242 11 C 0.006 3.994 12 C -0.008 4.008 13 C -0.584 4.584 14 H 0.089 0.911 15 C -0.196 4.196 16 N -0.569 5.569 17 Si 0.798 3.202 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.184 1.184 21 C -0.154 4.154 22 N -0.173 5.173 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.159 0.841 31 H 0.124 0.876 32 H 0.061 0.939 33 H 0.191 0.809 34 H 0.173 0.827 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.076 0.924 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.127 12.058 -18.985 26.041 hybrid contribution 1.417 -0.741 0.712 1.751 sum -11.709 11.317 -18.273 24.476 Atomic orbital electron populations 1.21787 0.93725 1.02024 1.01975 1.21614 0.96649 0.94568 0.90558 1.21950 1.00756 0.95296 1.02951 1.60628 1.33676 1.02521 1.35163 1.20723 1.01027 0.87793 0.90956 1.21400 0.88257 0.98782 0.98091 1.22072 1.02586 0.95488 0.91971 1.21288 0.92008 1.01449 0.99917 1.20498 0.95083 0.94572 0.87962 1.86115 1.25695 1.73391 1.39020 1.22958 0.75867 1.00629 0.99982 1.18958 0.95961 0.94745 0.91174 1.21397 0.91582 1.38672 1.06743 0.91111 1.26019 1.04150 0.94410 0.95067 1.70115 1.37695 1.38658 1.10471 0.85305 0.78233 0.77863 0.78798 1.19575 1.20671 1.18393 1.22930 1.00696 1.00544 0.91186 1.67305 1.16448 1.13567 1.19985 0.92677 0.91376 0.92647 0.93581 0.92231 0.92990 0.90575 0.84139 0.87612 0.93907 0.80897 0.82685 0.91845 0.91866 0.98134 0.98105 0.92432 0.82455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.41 71.98 0.68 -0.94 16 2 C 0.08 1.03 3.22 44.92 0.14 1.18 16 3 C -0.15 -1.85 9.18 71.98 0.66 -1.19 16 4 N -0.69 -12.28 6.30 -495.57 -3.12 -15.40 16 5 C 0.12 2.28 5.79 85.56 0.50 2.77 16 6 C 0.07 1.82 6.29 42.56 0.27 2.09 16 7 C -0.10 -2.27 9.71 22.34 0.22 -2.05 16 8 C -0.12 -3.31 10.13 22.56 0.23 -3.08 16 9 C 0.07 2.29 6.71 22.60 0.15 2.44 16 10 O -0.33 -13.47 10.15 -92.60 -0.94 -14.41 16 11 C 0.08 3.41 4.69 71.98 0.34 3.75 16 12 C 0.03 1.55 5.34 29.85 0.16 1.71 16 13 C -0.55 -30.54 9.11 25.60 0.23 -30.31 16 14 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 15 C 0.00 0.13 5.46 84.66 0.46 0.59 16 16 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 17 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 21 C 0.00 0.12 10.22 84.80 0.87 0.99 16 22 N -0.46 -13.85 10.27 -183.48 -1.88 -15.73 16 23 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.05 0.63 7.45 -2.39 -0.02 0.62 16 26 H 0.05 0.62 7.80 -2.39 -0.02 0.60 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.66 8.12 -2.39 -0.02 0.64 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.34 6.82 8.34 -89.69 -0.75 6.07 16 31 H 0.11 1.49 7.33 -2.39 -0.02 1.47 16 32 H 0.04 0.82 8.06 -2.39 -0.02 0.80 16 33 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 35 H 0.06 2.54 7.68 -2.39 -0.02 2.53 16 36 H 0.06 2.54 7.68 -2.38 -0.02 2.52 16 37 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 38 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 40 H 0.16 5.03 6.32 -2.91 -0.02 5.01 16 Total: -1.00 -65.15 335.93 1.54 -63.61 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.27 Total: 14.57 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 4.90 Total: -22.07 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -4.72 Total: -87.07 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.94 Total: -14.41 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -65.15 1.54 -63.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094210419.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.327 kcal (2) G-P(sol) polarization free energy of solvation -65.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds