Wall clock time and date at job start Mon Mar 30 2020 06:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46731 * 2 1 4 4 H 1.08999 * 109.47379 * 55.00610 * 3 2 1 5 5 N 1.46899 * 109.47192 * 295.00134 * 3 2 1 6 6 C 1.52999 * 109.46795 * 175.00222 * 3 2 1 7 7 C 1.50706 * 109.47163 * 185.00275 * 6 3 2 8 8 C 1.38246 * 119.55747 * 124.72535 * 7 6 3 9 9 C 1.38540 * 119.22135 * 179.77214 * 8 7 6 10 10 C 1.39144 * 118.37013 * 0.49651 * 9 8 7 11 11 O 1.35918 * 120.47210 * 179.73164 * 10 9 8 12 12 C 1.42898 * 116.99967 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47133 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47154 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99935 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99839 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00221 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99951 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46760 * 60.00015 * 18 16 14 20 20 H 1.48501 * 109.47281 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47004 * 300.00265 * 18 16 14 22 22 C 1.38698 * 119.05458 * 359.74641 * 10 9 8 23 23 N 1.31843 * 120.68743 * 0.02562 * 22 10 9 24 24 H 1.08996 * 109.47273 * 60.00043 * 1 2 3 25 25 H 1.09000 * 109.46757 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46895 * 299.99954 * 1 2 3 27 27 H 1.08997 * 109.47146 * 240.00482 * 2 1 3 28 28 H 1.08996 * 109.47273 * 119.99957 * 2 1 3 29 29 H 1.00896 * 110.99909 * 299.99814 * 5 3 2 30 30 H 1.00902 * 110.99948 * 63.95676 * 5 3 2 31 31 H 1.08997 * 109.47394 * 64.99834 * 6 3 2 32 32 H 1.09004 * 109.47644 * 304.99906 * 6 3 2 33 33 H 1.08002 * 120.39293 * 359.97438 * 8 7 6 34 34 H 1.07996 * 120.81699 * 180.24499 * 9 8 7 35 35 H 1.09008 * 109.46742 * 299.99701 * 12 11 10 36 36 H 1.09001 * 109.47242 * 59.99159 * 12 11 10 37 37 H 1.08997 * 109.46914 * 299.99960 * 13 12 11 38 38 H 1.09001 * 109.47545 * 59.99587 * 13 12 11 39 39 H 0.97001 * 120.00373 * 179.97438 * 17 16 14 40 40 H 1.08004 * 119.65835 * 179.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8419 5 7 1.6513 2.0993 -1.2552 6 6 3.5648 1.4444 0.1257 7 6 4.0569 2.8635 0.2493 8 6 4.8437 3.2209 1.3284 9 6 5.2963 4.5261 1.4326 10 6 4.9289 5.4342 0.4443 11 8 5.3444 6.7268 0.5071 12 6 4.9232 7.5955 -0.5464 13 6 5.4838 8.9984 -0.3054 14 6 5.0401 9.9144 -1.4168 15 1 4.4207 9.5338 -2.2154 16 6 5.4251 11.2383 -1.4141 17 7 6.1799 11.7017 -0.4420 18 14 4.8758 12.3736 -2.7922 19 1 3.3922 12.4314 -2.8241 20 1 5.4199 13.7354 -2.5582 21 1 5.3790 11.8563 -4.0900 22 6 4.1325 5.0015 -0.6055 23 7 3.7264 3.7488 -0.6702 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0421 1.6181 -2.0512 30 1 0.6475 2.1684 -1.3314 31 1 4.0029 0.9837 -0.7597 32 1 3.8571 0.8801 1.0113 33 1 5.1052 2.4904 2.0796 34 1 5.9156 4.8324 2.2626 35 1 5.2911 7.2155 -1.4996 36 1 3.8342 7.6385 -0.5685 37 1 5.1155 9.3781 0.6476 38 1 6.5727 8.9558 -0.2831 39 1 6.4511 12.6330 -0.4402 40 1 3.8412 5.6982 -1.3777 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094216515.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:47 Heat of formation + Delta-G solvation = -26.518041 kcal Electronic energy + Delta-G solvation = -19103.380886 eV Core-core repulsion = 16110.557438 eV Total energy + Delta-G solvation = -2992.823448 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.30205 -38.14108 -36.91116 -33.44060 -32.08197 -31.96272 -30.68450 -29.96460 -27.65393 -25.21605 -24.26445 -23.19153 -21.57925 -20.81363 -20.57402 -17.80864 -16.62211 -16.24349 -15.89198 -15.55295 -15.45198 -15.05907 -14.55141 -14.41605 -14.04601 -13.96415 -13.20629 -13.10091 -12.79581 -12.52367 -12.29373 -12.08225 -11.94485 -11.64526 -11.45420 -11.20186 -11.05322 -11.00103 -10.86323 -10.65123 -9.96238 -9.70186 -9.37155 -9.33677 -8.98787 -8.45969 -8.43794 -7.88503 -6.09643 -4.14374 1.40092 1.63782 3.30195 3.34280 3.36209 3.76757 4.04438 4.39238 4.41314 4.52818 4.66682 4.78801 4.85952 5.00643 5.05851 5.15255 5.26808 5.29673 5.41809 5.45618 5.60247 5.63631 5.65608 5.73072 5.84889 5.86861 6.02218 6.02607 6.05145 6.28787 6.38627 6.63943 6.84960 7.21582 7.47809 7.50763 7.63406 7.78014 8.00188 8.23840 8.37435 8.91046 9.50026 11.01906 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.031968 B = 0.003180 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.678016 B = 8802.774737 C = 9496.364368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.162 4.162 3 C 0.101 3.899 4 H 0.076 0.924 5 N -0.818 5.818 6 C -0.053 4.053 7 C 0.074 3.926 8 C -0.135 4.135 9 C -0.125 4.125 10 C 0.090 3.910 11 O -0.312 6.312 12 C 0.063 3.937 13 C 0.026 3.974 14 C -0.527 4.527 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.012 3.988 23 N -0.402 5.402 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.336 0.664 30 H 0.332 0.668 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.264 0.736 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.310 -23.002 2.212 24.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.202 4.202 3 C -0.011 4.011 4 H 0.094 0.906 5 N -0.347 5.347 6 C -0.092 4.092 7 C -0.065 4.065 8 C -0.155 4.155 9 C -0.152 4.152 10 C 0.041 3.959 11 O -0.224 6.224 12 C -0.011 4.011 13 C -0.011 4.011 14 C -0.565 4.565 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.148 4.148 23 N -0.111 5.111 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.211 -22.310 2.004 23.531 hybrid contribution -0.286 0.100 -0.328 0.447 sum -7.497 -22.209 1.676 23.500 Atomic orbital electron populations 1.21780 0.95832 1.01602 1.01906 1.22437 0.96345 0.99060 1.02323 1.21355 0.94354 0.91272 0.94164 0.90586 1.58715 1.14945 1.58033 1.02978 1.20450 0.94951 0.91493 1.02286 1.20794 0.97703 0.95828 0.92163 1.21748 0.98854 0.95845 0.99088 1.20866 1.02777 0.92208 0.99340 1.20311 0.94309 0.86166 0.95082 1.86177 1.70249 1.16064 1.49899 1.23386 0.98891 0.91489 0.87370 1.19115 0.97366 0.86323 0.98283 1.20939 1.32839 0.94343 1.08413 0.92308 1.24987 0.94893 0.98124 0.96153 1.69962 1.35462 1.15481 1.31931 0.86541 0.79049 0.79620 0.82134 1.20045 1.21140 1.20061 1.23088 0.98984 0.94132 0.98550 1.67479 1.16863 1.00756 1.25987 0.92798 0.92804 0.92560 0.92058 0.91644 0.85084 0.85463 0.90738 0.90513 0.85161 0.84579 0.92908 0.92890 0.95397 0.95403 0.92646 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.68 37.16 0.36 -0.63 16 2 C -0.16 -1.10 5.58 -26.73 -0.15 -1.25 16 3 C 0.10 0.91 2.78 -67.71 -0.19 0.72 16 4 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 5 N -0.82 -8.11 7.76 -4.67 -0.04 -8.14 16 6 C -0.05 -0.52 5.29 -27.88 -0.15 -0.66 16 7 C 0.07 0.99 6.18 -82.58 -0.51 0.48 16 8 C -0.14 -1.72 9.70 -39.47 -0.38 -2.10 16 9 C -0.13 -1.88 10.13 -39.13 -0.40 -2.28 16 10 C 0.09 1.61 6.71 -39.08 -0.26 1.34 16 11 O -0.31 -6.44 10.15 -19.48 -0.20 -6.63 16 12 C 0.06 1.34 4.69 37.16 0.17 1.52 16 13 C 0.03 0.69 5.34 -27.89 -0.15 0.54 16 14 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 18 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.01 0.20 10.22 -17.38 -0.18 0.02 16 23 N -0.40 -6.32 8.81 -9.35 -0.08 -6.40 16 24 H 0.05 0.34 6.87 -51.93 -0.36 -0.02 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.34 3.06 9.00 -39.29 -0.35 2.71 16 30 H 0.33 2.91 7.55 -39.29 -0.30 2.61 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 33 H 0.13 1.21 7.94 -52.49 -0.42 0.80 16 34 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.05 1.08 7.68 -51.92 -0.40 0.68 16 36 H 0.05 1.09 7.68 -51.93 -0.40 0.69 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.16 2.63 6.32 -52.48 -0.33 2.30 16 LS Contribution 331.89 15.07 5.00 5.00 Total: -1.00 -30.83 331.89 -8.15 -38.98 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.31 Total: 2.41 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -2.24 Total: -15.73 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.62 Total: -40.36 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.20 Total: -6.63 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.83 -8.15 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094216515.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.457 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds