Wall clock time and date at job start Mon Mar 30 2020 07:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.46927 * 2 1 4 4 C 1.36008 * 117.00342 * 179.97438 * 3 2 1 5 5 C 1.38482 * 120.03608 * 0.27516 * 4 3 2 6 6 C 1.38851 * 119.94081 * 180.25150 * 5 4 3 7 7 N 1.39981 * 119.97779 * 179.74643 * 6 5 4 8 8 C 1.46497 * 120.00332 * 359.72391 * 7 6 5 9 9 C 1.52999 * 109.47309 * 269.99907 * 8 7 6 10 10 C 1.46507 * 119.99534 * 179.72763 * 7 6 5 11 11 C 1.50697 * 109.47006 * 90.00002 * 10 7 6 12 12 H 1.07991 * 120.00449 * 359.72165 * 11 10 7 13 13 C 1.37885 * 119.99686 * 179.97438 * 11 10 7 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 10 16 16 H 1.48493 * 109.47326 * 90.00142 * 15 13 11 17 17 H 1.48506 * 109.46545 * 209.99892 * 15 13 11 18 18 H 1.48498 * 109.47210 * 329.99603 * 15 13 11 19 19 C 1.38848 * 120.03381 * 359.47318 * 6 5 4 20 20 C 1.38208 * 120.07974 * 0.27130 * 19 6 5 21 21 C 1.38676 * 120.05813 * 359.97438 * 20 19 6 22 22 N 1.40291 * 120.01803 * 180.02562 * 21 20 19 23 23 H 1.09006 * 109.47079 * 60.00600 * 1 2 3 24 24 H 1.09003 * 109.46581 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47201 * 300.00112 * 1 2 3 26 26 H 1.09001 * 109.47722 * 239.99901 * 2 1 3 27 27 H 1.09006 * 109.47079 * 119.99400 * 2 1 3 28 28 H 1.07994 * 120.02843 * 359.97438 * 5 4 3 29 29 H 1.08993 * 109.47146 * 30.00252 * 8 7 6 30 30 H 1.09008 * 109.47223 * 150.00174 * 8 7 6 31 31 H 1.09001 * 109.47048 * 60.00241 * 9 8 7 32 32 H 1.08998 * 109.47302 * 179.97438 * 9 8 7 33 33 H 1.09003 * 109.47121 * 300.00263 * 9 8 7 34 34 H 1.08998 * 109.47049 * 329.99430 * 10 7 6 35 35 H 1.09001 * 109.46896 * 209.99701 * 10 7 6 36 36 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 37 37 H 1.07998 * 119.95653 * 180.29858 * 19 6 5 38 38 H 1.08007 * 119.96733 * 180.02562 * 20 19 6 39 39 H 0.97003 * 119.99756 * 359.97438 * 22 21 20 40 40 H 0.96997 * 120.00139 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5256 0.0005 5 6 4.1990 0.4280 -0.0047 6 6 5.5752 0.6124 0.0011 7 7 6.4294 -0.4966 0.0012 8 6 5.8714 -1.8511 0.0013 9 6 5.6771 -2.3227 1.4437 10 6 7.8816 -0.3026 0.0014 11 6 8.3793 -0.2360 1.4222 12 1 7.6831 -0.3245 2.2430 13 6 9.7231 -0.0570 1.6742 14 7 10.5710 0.0502 0.6747 15 14 10.3391 0.0331 3.4354 16 1 10.6860 -1.3309 3.9090 17 1 11.5441 0.8990 3.4945 18 1 9.2770 0.6031 4.3028 19 6 6.1045 1.8960 0.0012 20 6 5.2628 2.9923 0.0011 21 6 3.8878 2.8123 0.0004 22 7 3.0343 3.9257 -0.0003 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8935 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 3.7875 -0.5704 -0.0088 29 1 4.9102 -1.8481 -0.5126 30 1 6.5560 -2.5262 -0.5125 31 1 4.9925 -1.6477 1.9575 32 1 5.2615 -3.3303 1.4438 33 1 6.6384 -2.3257 1.9576 34 1 8.1239 0.6276 -0.5125 35 1 8.3596 -1.1366 -0.5124 36 1 11.5164 0.1757 0.8520 37 1 7.1751 2.0379 0.0009 38 1 5.6765 3.9900 0.0007 39 1 3.4059 4.8217 0.0001 40 1 2.0725 3.7996 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104234115.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:47 Heat of formation + Delta-G solvation = -28.945143 kcal Electronic energy + Delta-G solvation = -20312.966630 eV Core-core repulsion = 17320.037935 eV Total energy + Delta-G solvation = -2992.928695 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09797 -39.07588 -37.43110 -34.96374 -34.25010 -32.56217 -31.78031 -30.64076 -29.17202 -27.41238 -25.10167 -24.61336 -23.40535 -22.25247 -21.27802 -19.01025 -18.55718 -17.75207 -17.35224 -16.90188 -16.82067 -16.53193 -15.76958 -15.25786 -15.04179 -14.97119 -14.28924 -14.08503 -14.01135 -13.77354 -13.37347 -13.22298 -13.13934 -12.95706 -12.81812 -12.70526 -12.58515 -12.25754 -12.05209 -11.90893 -11.81551 -11.49783 -11.38083 -11.34189 -10.56951 -9.49143 -9.09025 -8.20438 -7.25085 -6.28381 0.64136 1.05682 1.38128 1.39652 1.50218 2.36755 2.40250 2.68724 3.12756 3.16412 3.32159 4.01439 4.13358 4.16408 4.28079 4.39852 4.49646 4.52221 4.55939 4.62711 4.73025 4.82042 4.96342 5.00686 5.01420 5.06600 5.12701 5.23572 5.26538 5.32577 5.49622 5.53041 5.72641 5.76222 5.91031 6.17163 6.44186 6.60398 6.89299 6.94091 7.09976 7.31398 7.42820 8.89893 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.022051 B = 0.005504 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.465777 B = 5086.131051 C = 5751.086173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.325 6.325 4 C 0.092 3.908 5 C -0.252 4.252 6 C 0.203 3.797 7 N -0.626 5.626 8 C 0.124 3.876 9 C -0.159 4.159 10 C 0.270 3.730 11 C -0.528 4.528 12 H 0.050 0.950 13 C 0.012 3.988 14 N -0.928 5.928 15 Si 0.955 3.045 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.274 1.274 19 C -0.201 4.201 20 C -0.119 4.119 21 C 0.117 3.883 22 N -0.876 5.876 23 H 0.065 0.935 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.138 0.862 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.010 0.990 35 H 0.007 0.993 36 H 0.265 0.735 37 H 0.102 0.898 38 H 0.137 0.863 39 H 0.401 0.599 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.220 0.668 -1.563 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 O -0.240 6.240 4 C 0.042 3.958 5 C -0.276 4.276 6 C 0.098 3.902 7 N -0.336 5.336 8 C 0.001 3.999 9 C -0.218 4.218 10 C 0.148 3.852 11 C -0.567 4.567 12 H 0.069 0.931 13 C -0.186 4.186 14 N -0.569 5.569 15 Si 0.781 3.219 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.199 1.199 19 C -0.224 4.224 20 C -0.143 4.143 21 C 0.014 3.986 22 N -0.422 5.422 23 H 0.085 0.915 24 H 0.115 0.885 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.156 0.844 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.028 0.972 35 H 0.025 0.975 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.155 0.845 39 H 0.230 0.770 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -18.024 0.587 -1.618 18.106 hybrid contribution 1.041 0.098 0.858 1.353 sum -16.983 0.685 -0.760 17.014 Atomic orbital electron populations 1.21769 0.90995 1.04020 1.03240 1.22921 0.96898 0.81391 1.01404 1.85909 1.18029 1.30412 1.89672 1.18133 0.82451 0.92161 1.03005 1.20519 0.91345 0.98529 1.17173 1.17669 0.89538 0.87574 0.95393 1.46931 1.04888 1.03059 1.78698 1.21331 0.98700 0.82869 0.96989 1.22136 1.01215 1.01084 0.97358 1.18726 0.75925 0.95247 0.95260 1.21797 0.92515 1.48929 0.93455 0.93142 1.25719 0.97015 0.94985 1.00924 1.70039 1.03356 1.50932 1.32571 0.85598 0.77728 0.78232 0.80370 1.19805 1.20627 1.19851 1.20534 0.99374 0.91635 1.10850 1.20291 0.90473 0.98662 1.04835 1.16904 0.89917 0.85839 1.05903 1.41962 1.07386 1.04632 1.88171 0.91548 0.88483 0.91740 0.92091 0.92445 0.84428 0.90082 0.91740 0.93768 0.89943 0.94206 0.97234 0.97521 0.92623 0.87987 0.84520 0.76999 0.77119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 10.28 71.98 0.74 -1.37 16 2 C 0.05 1.04 5.46 71.98 0.39 1.43 16 3 O -0.33 -9.07 9.38 -93.64 -0.88 -9.94 16 4 C 0.09 3.03 6.70 22.58 0.15 3.18 16 5 C -0.25 -8.88 8.20 22.47 0.18 -8.69 16 6 C 0.20 8.48 6.56 38.13 0.25 8.73 16 7 N -0.63 -27.46 2.60 -701.43 -1.82 -29.28 16 8 C 0.12 4.39 5.93 86.38 0.51 4.90 16 9 C -0.16 -5.32 10.24 71.98 0.74 -4.58 16 10 C 0.27 14.20 4.96 85.63 0.42 14.62 16 11 C -0.53 -29.57 8.92 25.60 0.23 -29.34 16 12 H 0.05 2.87 7.43 -2.92 -0.02 2.85 16 13 C 0.01 0.69 5.46 84.66 0.46 1.15 16 14 N -0.93 -54.81 13.29 21.45 0.28 -54.52 16 15 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 19 C -0.20 -8.59 9.21 22.41 0.21 -8.38 16 20 C -0.12 -4.25 9.89 22.37 0.22 -4.03 16 21 C 0.12 3.82 6.77 38.14 0.26 4.08 16 22 N -0.88 -21.49 9.11 -50.90 -0.46 -21.95 16 23 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 24 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 1.25 7.65 -2.39 -0.02 1.23 16 27 H 0.06 1.23 7.67 -2.38 -0.02 1.21 16 28 H 0.14 4.23 4.37 -2.91 -0.01 4.22 16 29 H 0.08 2.40 6.19 -2.39 -0.01 2.38 16 30 H 0.06 2.26 7.89 -2.38 -0.02 2.24 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.04 1.57 7.27 -2.39 -0.02 1.56 16 34 H 0.01 0.55 6.20 -2.39 -0.01 0.54 16 35 H 0.01 0.38 7.89 -2.39 -0.02 0.36 16 36 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 37 H 0.10 4.94 6.13 -2.91 -0.02 4.93 16 38 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 39 H 0.40 7.99 8.85 -92.71 -0.82 7.17 16 40 H 0.40 8.87 8.19 -92.71 -0.76 8.11 16 Total: -1.00 -65.03 326.60 3.39 -61.64 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -0.52 Total: 25.78 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 4.77 Total: -18.30 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -2.00 Total: -105.76 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.88 Total: -9.94 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.03 3.39 -61.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104234115.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.696 kcal (2) G-P(sol) polarization free energy of solvation -65.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds