Wall clock time and date at job start Mon Mar 30 2020 07:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47207 * 2 1 4 4 C 1.35998 * 117.00202 * 180.02562 * 3 2 1 5 5 C 1.38480 * 120.04517 * 359.97438 * 4 3 2 6 6 C 1.38837 * 119.95369 * 179.72924 * 5 4 3 7 7 N 1.39981 * 119.98653 * 180.02562 * 6 5 4 8 8 C 1.46504 * 120.00020 * 354.19434 * 7 6 5 9 9 C 1.46503 * 119.99896 * 174.19389 * 7 6 5 10 10 H 1.08992 * 109.47529 * 4.66464 * 9 7 6 11 11 C 1.53007 * 109.46754 * 124.66435 * 9 7 6 12 12 C 1.50702 * 109.47105 * 244.65976 * 9 7 6 13 13 H 1.07994 * 119.99844 * 0.02562 * 12 9 7 14 14 C 1.37874 * 119.99768 * 180.02562 * 12 9 7 15 15 N 1.31506 * 120.00297 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99824 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.47008 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47083 * 120.00024 * 16 14 12 19 19 H 1.48505 * 109.47025 * 240.00111 * 16 14 12 20 20 C 1.38849 * 120.02965 * 0.02562 * 6 5 4 21 21 C 1.38208 * 120.08567 * 359.97438 * 20 6 5 22 22 C 1.38673 * 120.05042 * 0.02562 * 21 20 6 23 23 N 1.40296 * 120.01589 * 180.02562 * 22 21 20 24 24 H 1.08994 * 109.46878 * 60.00663 * 1 2 3 25 25 H 1.09004 * 109.46861 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47269 * 300.00402 * 1 2 3 27 27 H 1.08999 * 109.47269 * 239.99597 * 2 1 3 28 28 H 1.09008 * 109.46955 * 119.99434 * 2 1 3 29 29 H 1.08001 * 120.02193 * 359.74762 * 5 4 3 30 30 H 1.08994 * 109.46844 * 89.99882 * 8 7 6 31 31 H 1.09000 * 109.47185 * 210.00214 * 8 7 6 32 32 H 1.09003 * 109.46795 * 330.00329 * 8 7 6 33 33 H 1.09001 * 109.46784 * 179.97438 * 11 9 7 34 34 H 1.09002 * 109.47084 * 299.99660 * 11 9 7 35 35 H 1.08998 * 109.47313 * 60.00093 * 11 9 7 36 36 H 0.97008 * 120.00257 * 179.97438 * 15 14 12 37 37 H 1.08002 * 119.95987 * 180.02562 * 20 6 5 38 38 H 1.07998 * 119.97439 * 180.02562 * 21 20 6 39 39 H 0.97004 * 119.99959 * 180.02562 * 23 22 21 40 40 H 0.96994 * 120.00219 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 4.1991 0.4280 -0.0005 6 6 5.5752 0.6121 -0.0068 7 7 6.4294 -0.4968 -0.0073 8 6 5.8770 -1.8471 0.1270 9 6 7.8758 -0.3072 -0.1422 10 1 8.1037 0.7586 -0.1466 11 6 8.5898 -0.9766 1.0339 12 6 8.3455 -0.9266 -1.4333 13 1 7.6373 -1.4126 -2.0880 14 6 9.6792 -0.8730 -1.7785 15 7 10.5416 -0.2817 -0.9810 16 14 10.2612 -1.6402 -3.3792 17 1 9.1034 -2.2389 -4.0908 18 1 10.8807 -0.5947 -4.2327 19 1 11.2621 -2.6974 -3.0862 20 6 6.1045 1.8957 -0.0125 21 6 5.2630 2.9921 -0.0125 22 6 3.8880 2.8122 -0.0063 23 7 3.0345 3.9257 -0.0069 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.7875 -0.5705 0.0040 30 1 5.6534 -2.2481 -0.8615 31 1 6.6042 -2.4894 0.6238 32 1 4.9624 -1.8082 0.7188 33 1 9.6660 -0.8359 0.9333 34 1 8.2501 -0.5286 1.9678 35 1 8.3620 -2.0425 1.0383 36 1 11.4801 -0.2443 -1.2237 37 1 7.1751 2.0377 -0.0177 38 1 5.6766 3.9897 -0.0174 39 1 2.0727 3.7995 -0.0021 40 1 3.4061 4.8216 -0.0112 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104234162.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:39 Heat of formation + Delta-G solvation = -2.828214 kcal Electronic energy + Delta-G solvation = -20246.671054 eV Core-core repulsion = 17254.874875 eV Total energy + Delta-G solvation = -2991.796180 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.77358 -37.72065 -36.07087 -33.63700 -32.26051 -31.61730 -29.94027 -28.60423 -27.50889 -25.30508 -24.89194 -23.36646 -21.81117 -20.85266 -19.49258 -17.65126 -16.68197 -16.32942 -15.87038 -15.79476 -15.30871 -14.71978 -14.38766 -13.65942 -13.61629 -13.53081 -13.08000 -12.74307 -12.55161 -12.35694 -11.96396 -11.89206 -11.50746 -11.34533 -11.21048 -10.97423 -10.86400 -10.59342 -10.50352 -10.47085 -10.29392 -10.02486 -9.88637 -9.05996 -8.42511 -8.06074 -7.63522 -6.13791 -5.76171 -4.13752 2.03928 2.48129 3.26043 3.34364 3.38706 3.49804 4.21176 4.42758 4.51527 4.58236 4.96593 5.04158 5.23225 5.29163 5.41005 5.54125 5.77894 5.82933 5.88627 5.96674 5.99749 6.13449 6.23151 6.31664 6.42779 6.64172 6.74234 6.86883 6.89654 7.05912 7.16230 7.30453 7.46891 7.63696 7.70245 7.93321 8.15621 8.24923 8.33445 8.42376 8.69534 8.95080 9.53380 10.97609 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.023699 B = 0.005030 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.189117 B = 5564.949853 C = 5986.665001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.324 6.324 4 C 0.097 3.903 5 C -0.259 4.259 6 C 0.228 3.772 7 N -0.612 5.612 8 C 0.105 3.895 9 C 0.266 3.734 10 H 0.053 0.947 11 C -0.150 4.150 12 C -0.520 4.520 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.895 3.105 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.186 4.186 21 C -0.113 4.113 22 C 0.111 3.889 23 N -0.890 5.890 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.121 0.879 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.012 0.988 35 H 0.030 0.970 36 H 0.262 0.738 37 H 0.131 0.869 38 H 0.118 0.882 39 H 0.393 0.607 40 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.566 2.383 3.268 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.239 6.239 4 C 0.048 3.952 5 C -0.284 4.284 6 C 0.121 3.879 7 N -0.320 5.320 8 C -0.039 4.039 9 C 0.166 3.834 10 H 0.070 0.930 11 C -0.209 4.209 12 C -0.559 4.559 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.531 5.531 16 Si 0.723 3.277 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.209 4.209 21 C -0.136 4.136 22 C 0.010 3.990 23 N -0.435 5.435 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.138 0.862 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.110 0.890 34 H 0.031 0.969 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.148 0.852 38 H 0.136 0.864 39 H 0.220 0.780 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -14.309 2.281 3.278 14.856 hybrid contribution 0.337 -0.502 -0.947 1.123 sum -13.972 1.779 2.332 14.276 Atomic orbital electron populations 1.21757 0.93474 1.02409 1.03041 1.22596 0.94927 0.82837 1.01222 1.85885 1.19628 1.28342 1.90047 1.18024 0.81407 0.92237 1.03489 1.20402 0.92458 0.97323 1.18209 1.17540 0.88756 0.87990 0.93600 1.47077 1.06732 1.01955 1.76262 1.21321 0.97675 0.85284 0.99606 1.18872 0.73336 0.97534 0.93685 0.92964 1.22131 1.04444 0.98402 0.95903 1.21495 0.93086 1.36703 1.04659 0.92337 1.24890 0.96591 0.95302 0.97058 1.69872 1.02945 1.43653 1.36580 0.86481 0.78646 0.79002 0.83531 1.19875 1.20936 1.21015 1.20616 1.00192 0.90370 1.09771 1.20147 0.90141 0.98461 1.04815 1.16767 0.89862 0.84716 1.07678 1.42012 1.07303 1.04848 1.89346 0.91820 0.90801 0.91861 0.92416 0.92539 0.86163 0.94613 0.91636 0.93751 0.88963 0.96898 0.95135 0.92829 0.85172 0.86373 0.78043 0.78498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.16 0.38 -0.97 16 2 C 0.06 0.73 5.46 37.16 0.20 0.93 16 3 O -0.32 -4.93 9.38 -19.73 -0.19 -5.12 16 4 C 0.10 1.68 6.70 -39.10 -0.26 1.42 16 5 C -0.26 -4.76 8.15 -39.27 -0.32 -5.08 16 6 C 0.23 4.71 6.54 -83.69 -0.55 4.16 16 7 N -0.61 -13.35 2.90 -173.26 -0.50 -13.85 16 8 C 0.11 1.97 9.51 59.85 0.57 2.54 16 9 C 0.27 6.58 2.58 -69.08 -0.18 6.40 16 10 H 0.05 1.38 5.31 -51.93 -0.28 1.11 16 11 C -0.15 -3.56 8.85 37.16 0.33 -3.23 16 12 C -0.52 -14.03 8.44 -34.44 -0.29 -14.32 16 13 H 0.06 1.61 7.79 -52.49 -0.41 1.21 16 14 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -24.64 11.32 55.43 0.63 -24.02 16 16 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.19 -3.75 9.31 -39.37 -0.37 -4.12 16 21 C -0.11 -1.96 9.89 -39.43 -0.39 -2.35 16 22 C 0.11 1.87 6.77 -83.43 -0.57 1.30 16 23 N -0.89 -11.83 9.11 32.56 0.30 -11.54 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 28 H 0.06 0.67 7.66 -51.92 -0.40 0.27 16 29 H 0.12 2.01 4.54 -52.49 -0.24 1.77 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.22 6.19 -51.93 -0.32 0.90 16 32 H 0.04 0.71 6.46 -51.93 -0.34 0.38 16 33 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 34 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.03 0.68 6.53 -51.93 -0.34 0.35 16 36 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.13 2.77 5.73 -52.49 -0.30 2.47 16 38 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.39 4.85 8.19 -40.82 -0.33 4.52 16 40 H 0.39 4.27 8.85 -40.82 -0.36 3.90 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -29.07 319.40 -7.20 -36.26 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.70 Total: 9.08 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.53 Total: -11.70 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.42 Total: -49.41 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.19 Total: -5.12 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.07 -7.20 -36.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104234162.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.437 kcal (2) G-P(sol) polarization free energy of solvation -29.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds