Wall clock time and date at job start Mon Mar 30 2020 07:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47207 * 2 1 4 4 C 1.35998 * 117.00202 * 180.02562 * 3 2 1 5 5 C 1.38480 * 120.04517 * 359.97438 * 4 3 2 6 6 C 1.38837 * 119.95369 * 179.72924 * 5 4 3 7 7 N 1.39981 * 119.98653 * 180.02562 * 6 5 4 8 8 C 1.46504 * 120.00020 * 354.19434 * 7 6 5 9 9 C 1.46503 * 119.99896 * 174.19389 * 7 6 5 10 10 H 1.08992 * 109.47529 * 4.66464 * 9 7 6 11 11 C 1.53007 * 109.46754 * 124.66435 * 9 7 6 12 12 C 1.50702 * 109.47105 * 244.65976 * 9 7 6 13 13 H 1.07994 * 119.99844 * 0.02562 * 12 9 7 14 14 C 1.37874 * 119.99768 * 180.02562 * 12 9 7 15 15 N 1.31506 * 120.00297 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99824 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.47008 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47083 * 120.00024 * 16 14 12 19 19 H 1.48505 * 109.47025 * 240.00111 * 16 14 12 20 20 C 1.38849 * 120.02965 * 0.02562 * 6 5 4 21 21 C 1.38208 * 120.08567 * 359.97438 * 20 6 5 22 22 C 1.38673 * 120.05042 * 0.02562 * 21 20 6 23 23 N 1.40296 * 120.01589 * 180.02562 * 22 21 20 24 24 H 1.08994 * 109.46878 * 60.00663 * 1 2 3 25 25 H 1.09004 * 109.46861 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47269 * 300.00402 * 1 2 3 27 27 H 1.08999 * 109.47269 * 239.99597 * 2 1 3 28 28 H 1.09008 * 109.46955 * 119.99434 * 2 1 3 29 29 H 1.08001 * 120.02193 * 359.74762 * 5 4 3 30 30 H 1.08994 * 109.46844 * 89.99882 * 8 7 6 31 31 H 1.09000 * 109.47185 * 210.00214 * 8 7 6 32 32 H 1.09003 * 109.46795 * 330.00329 * 8 7 6 33 33 H 1.09001 * 109.46784 * 179.97438 * 11 9 7 34 34 H 1.09002 * 109.47084 * 299.99660 * 11 9 7 35 35 H 1.08998 * 109.47313 * 60.00093 * 11 9 7 36 36 H 0.97008 * 120.00257 * 179.97438 * 15 14 12 37 37 H 1.08002 * 119.95987 * 180.02562 * 20 6 5 38 38 H 1.07998 * 119.97439 * 180.02562 * 21 20 6 39 39 H 0.97004 * 119.99959 * 180.02562 * 23 22 21 40 40 H 0.96994 * 120.00219 * 359.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 4.1991 0.4280 -0.0005 6 6 5.5752 0.6121 -0.0068 7 7 6.4294 -0.4968 -0.0073 8 6 5.8770 -1.8471 0.1270 9 6 7.8758 -0.3072 -0.1422 10 1 8.1037 0.7586 -0.1466 11 6 8.5898 -0.9766 1.0339 12 6 8.3455 -0.9266 -1.4333 13 1 7.6373 -1.4126 -2.0880 14 6 9.6792 -0.8730 -1.7785 15 7 10.5416 -0.2817 -0.9810 16 14 10.2612 -1.6402 -3.3792 17 1 9.1034 -2.2389 -4.0908 18 1 10.8807 -0.5947 -4.2327 19 1 11.2621 -2.6974 -3.0862 20 6 6.1045 1.8957 -0.0125 21 6 5.2630 2.9921 -0.0125 22 6 3.8880 2.8122 -0.0063 23 7 3.0345 3.9257 -0.0069 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.7875 -0.5705 0.0040 30 1 5.6534 -2.2481 -0.8615 31 1 6.6042 -2.4894 0.6238 32 1 4.9624 -1.8082 0.7188 33 1 9.6660 -0.8359 0.9333 34 1 8.2501 -0.5286 1.9678 35 1 8.3620 -2.0425 1.0383 36 1 11.4801 -0.2443 -1.2237 37 1 7.1751 2.0377 -0.0177 38 1 5.6766 3.9897 -0.0174 39 1 2.0727 3.7995 -0.0021 40 1 3.4061 4.8216 -0.0112 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104234162.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:38 Heat of formation + Delta-G solvation = -20.341315 kcal Electronic energy + Delta-G solvation = -20247.430479 eV Core-core repulsion = 17254.874875 eV Total energy + Delta-G solvation = -2992.555605 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.10375 -39.13330 -37.52287 -35.32344 -33.89546 -32.55094 -31.59038 -30.13177 -28.92588 -27.27400 -26.40005 -24.50515 -23.35423 -22.15842 -21.10363 -19.04195 -18.46794 -17.71006 -17.26257 -16.92093 -16.86426 -16.48147 -15.74263 -15.27215 -15.13094 -14.83442 -14.39782 -14.20522 -13.91802 -13.43446 -13.37906 -13.22777 -13.01768 -12.95589 -12.86565 -12.67184 -12.48976 -12.24999 -12.14545 -11.90855 -11.74249 -11.57835 -11.48091 -10.98215 -10.47254 -9.47378 -9.07711 -8.14687 -7.25208 -6.25699 0.61845 1.03602 1.39130 1.41805 1.52340 2.36000 2.40350 2.72754 3.13219 3.15485 3.31545 4.02134 4.11779 4.23104 4.33842 4.41916 4.48026 4.55209 4.66107 4.73859 4.82126 4.89142 4.95617 4.99004 5.00137 5.05726 5.13826 5.21957 5.29911 5.39966 5.52022 5.61571 5.76005 5.88339 5.96448 6.25194 6.42574 6.60584 6.89979 6.96747 7.11400 7.31113 7.46068 8.91542 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.023699 B = 0.005030 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.189117 B = 5564.949853 C = 5986.665001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.325 6.325 4 C 0.094 3.906 5 C -0.255 4.255 6 C 0.199 3.801 7 N -0.626 5.626 8 C 0.107 3.893 9 C 0.271 3.729 10 H 0.028 0.972 11 C -0.137 4.137 12 C -0.534 4.534 13 H 0.046 0.954 14 C 0.020 3.980 15 N -0.914 5.914 16 Si 0.955 3.045 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.277 1.277 20 C -0.209 4.209 21 C -0.115 4.115 22 C 0.116 3.884 23 N -0.876 5.876 24 H 0.064 0.936 25 H 0.096 0.904 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.135 0.865 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.023 0.977 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.107 0.893 38 H 0.141 0.859 39 H 0.400 0.600 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.677 2.383 3.068 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 O -0.240 6.240 4 C 0.044 3.956 5 C -0.280 4.280 6 C 0.094 3.906 7 N -0.336 5.336 8 C -0.037 4.037 9 C 0.169 3.831 10 H 0.045 0.955 11 C -0.195 4.195 12 C -0.573 4.573 13 H 0.064 0.936 14 C -0.179 4.179 15 N -0.554 5.554 16 Si 0.781 3.219 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.202 1.202 20 C -0.232 4.232 21 C -0.138 4.138 22 C 0.013 3.987 23 N -0.421 5.421 24 H 0.083 0.917 25 H 0.115 0.885 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.152 0.848 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.125 0.875 38 H 0.159 0.841 39 H 0.229 0.771 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -16.476 2.311 3.085 16.921 hybrid contribution 0.836 -0.418 -0.866 1.274 sum -15.641 1.893 2.220 15.910 Atomic orbital electron populations 1.21767 0.90920 1.04015 1.03294 1.22917 0.96950 0.81391 1.01350 1.85905 1.18069 1.30377 1.89619 1.18158 0.82421 0.92214 1.02762 1.20517 0.91500 0.98511 1.17428 1.17775 0.89651 0.87768 0.95422 1.46926 1.05667 1.03323 1.77679 1.21393 0.98581 0.83864 0.99820 1.18554 0.75549 0.95844 0.93133 0.95478 1.21937 1.02738 0.98732 0.96136 1.21695 0.93213 1.36843 1.05563 0.93560 1.25586 0.96705 0.95734 0.99897 1.69982 1.03155 1.44344 1.37896 0.85555 0.78079 0.78280 0.79971 1.19867 1.20682 1.20218 1.20585 0.99481 0.91493 1.11682 1.20304 0.90363 0.98730 1.04402 1.16914 0.90029 0.85739 1.05989 1.41964 1.07396 1.04633 1.88156 0.91696 0.88538 0.91461 0.92585 0.92114 0.84753 0.95021 0.91961 0.91041 0.91292 0.95830 0.94545 0.92682 0.87530 0.84143 0.77139 0.76929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.05 1.06 5.46 71.98 0.39 1.46 16 3 O -0.33 -9.09 9.38 -93.53 -0.88 -9.97 16 4 C 0.09 3.09 6.70 22.58 0.15 3.24 16 5 C -0.26 -9.11 8.15 22.47 0.18 -8.93 16 6 C 0.20 8.28 6.54 38.13 0.25 8.53 16 7 N -0.63 -27.73 2.90 -702.07 -2.03 -29.76 16 8 C 0.11 3.95 9.51 127.77 1.22 5.17 16 9 C 0.27 13.83 2.58 44.25 0.11 13.95 16 10 H 0.03 1.53 5.31 -2.39 -0.01 1.51 16 11 C -0.14 -6.62 8.85 71.98 0.64 -5.98 16 12 C -0.53 -29.44 8.44 25.60 0.22 -29.23 16 13 H 0.05 2.60 7.79 -2.91 -0.02 2.58 16 14 C 0.02 1.10 5.30 84.66 0.45 1.55 16 15 N -0.91 -51.55 11.32 21.44 0.24 -51.31 16 16 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 20 C -0.21 -8.64 9.31 22.41 0.21 -8.43 16 21 C -0.11 -3.92 9.89 22.37 0.22 -3.70 16 22 C 0.12 3.70 6.77 38.14 0.26 3.96 16 23 N -0.88 -20.91 9.11 -50.89 -0.46 -21.38 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 1.25 7.66 -2.39 -0.02 1.23 16 28 H 0.06 1.28 7.66 -2.38 -0.02 1.26 16 29 H 0.13 4.27 4.54 -2.91 -0.01 4.26 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 2.30 6.19 -2.39 -0.01 2.29 16 32 H 0.07 2.20 6.46 -2.39 -0.02 2.19 16 33 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 34 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.04 1.66 6.53 -2.39 -0.02 1.64 16 36 H 0.26 14.10 8.31 -92.70 -0.77 13.33 16 37 H 0.11 4.84 5.73 -2.91 -0.02 4.82 16 38 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 39 H 0.40 8.69 8.19 -92.71 -0.76 7.93 16 40 H 0.40 7.66 8.85 -92.71 -0.82 6.84 16 Total: -1.00 -62.56 319.40 3.42 -59.14 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -0.51 Total: 27.46 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 5.04 Total: -19.82 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -2.25 Total: -102.45 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -0.88 Total: -9.97 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -62.56 3.42 -59.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104234162.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.794 kcal (2) G-P(sol) polarization free energy of solvation -62.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds