Wall clock time and date at job start Mon Mar 30 2020 06:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36012 * 116.99982 * 2 1 4 4 C 1.38478 * 120.04378 * 0.25367 * 3 2 1 5 5 C 1.38837 * 119.94731 * 180.27605 * 4 3 2 6 6 N 1.39988 * 119.98416 * 179.76370 * 5 4 3 7 7 C 1.46500 * 119.99833 * 174.32051 * 6 5 4 8 8 C 1.50701 * 109.46922 * 90.00473 * 7 6 5 9 9 H 1.08002 * 120.00137 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99958 * 179.72143 * 8 7 6 11 11 N 1.31514 * 120.00116 * 0.27655 * 10 8 7 12 12 Si 1.86797 * 120.00183 * 180.27477 * 10 8 7 13 13 H 1.48496 * 109.47217 * 89.99887 * 12 10 8 14 14 H 1.48500 * 109.47239 * 210.00218 * 12 10 8 15 15 H 1.48502 * 109.46934 * 330.00328 * 12 10 8 16 16 C 1.46500 * 119.99830 * 354.32801 * 6 5 4 17 17 C 1.53001 * 109.46693 * 304.68243 * 16 6 5 18 18 C 1.53001 * 109.47406 * 64.68323 * 16 6 5 19 19 C 1.38851 * 120.03163 * 359.49188 * 5 4 3 20 20 C 1.38211 * 120.08212 * 0.22950 * 19 5 4 21 21 C 1.38673 * 120.05385 * 0.02715 * 20 19 5 22 22 N 1.40287 * 120.01636 * 179.97438 * 21 20 19 23 23 H 1.08999 * 109.47032 * 60.00028 * 1 2 3 24 24 H 1.08997 * 109.47001 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47133 * 300.00326 * 1 2 3 26 26 H 1.08001 * 120.02487 * 0.02562 * 4 3 2 27 27 H 1.08992 * 109.47251 * 330.00306 * 7 6 5 28 28 H 1.09001 * 109.46769 * 210.00467 * 7 6 5 29 29 H 0.96994 * 120.00468 * 179.97438 * 11 10 8 30 30 H 1.09003 * 109.46900 * 184.68591 * 16 6 5 31 31 H 1.08996 * 109.47544 * 65.00738 * 17 16 6 32 32 H 1.09005 * 109.46872 * 185.00665 * 17 16 6 33 33 H 1.08997 * 109.47319 * 305.00559 * 17 16 6 34 34 H 1.09001 * 109.46845 * 55.02313 * 18 16 6 35 35 H 1.08993 * 109.46724 * 175.02874 * 18 16 6 36 36 H 1.09004 * 109.47015 * 295.02782 * 18 16 6 37 37 H 1.08001 * 119.95725 * 180.25427 * 19 5 4 38 38 H 1.08001 * 119.97019 * 180.02562 * 20 19 5 39 39 H 0.97001 * 119.99910 * 359.97438 * 22 21 20 40 40 H 0.96998 * 120.00540 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2931 2.3738 0.0053 5 6 1.9255 3.6098 -0.0005 6 7 1.1647 4.7849 -0.0001 7 6 1.8269 6.0862 0.1193 8 6 2.1658 6.6053 -1.2543 9 1 1.9135 6.0239 -2.1287 10 6 2.7932 7.8250 -1.3949 11 7 3.1009 8.5328 -0.3300 12 14 3.2064 8.4720 -3.0978 13 1 2.0693 9.2776 -3.6106 14 1 4.4215 9.3223 -3.0229 15 1 3.4568 7.3302 -4.0138 16 6 -0.2937 4.7133 -0.1191 17 6 -0.6646 3.9304 -1.3802 18 6 -0.8715 4.0063 1.1086 19 6 3.3122 3.6810 -0.0010 20 6 4.0653 2.5221 -0.0004 21 6 3.4373 1.2857 0.0000 22 7 4.2025 0.1099 0.0000 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2145 2.3186 0.0099 27 1 2.7414 5.9764 0.7021 28 1 1.1599 6.7888 0.6190 29 1 3.5426 9.3907 -0.4289 30 1 -0.7029 5.7215 -0.1838 31 1 -0.3328 2.8973 -1.2773 32 1 -1.7459 3.9527 -1.5168 33 1 -0.1797 4.3833 -2.2448 34 1 -0.5338 4.5135 2.0124 35 1 -1.9602 4.0309 1.0632 36 1 -0.5319 2.9706 1.1248 37 1 3.8028 4.6431 -0.0013 38 1 5.1438 2.5795 -0.0004 39 1 5.1712 0.1616 -0.0007 40 1 3.7631 -0.7548 0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111053633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:56 Heat of formation + Delta-G solvation = 6.323443 kcal Electronic energy + Delta-G solvation = -20789.595824 eV Core-core repulsion = 17798.196490 eV Total energy + Delta-G solvation = -2991.399334 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.88586 -37.84003 -36.24768 -33.29700 -33.14464 -31.15310 -29.33002 -28.13785 -26.88069 -26.75885 -25.56684 -22.69564 -21.69758 -21.25060 -19.70209 -17.08155 -16.76169 -16.39012 -16.06213 -15.39817 -15.10726 -14.89695 -14.49760 -14.22690 -13.74098 -13.39643 -12.75907 -12.62237 -12.51879 -12.26251 -11.96273 -11.91770 -11.58674 -11.41359 -11.17744 -11.08306 -10.90291 -10.73812 -10.71809 -10.33640 -10.22858 -9.82684 -9.74697 -9.44514 -8.45386 -8.01740 -7.61172 -6.15640 -5.72666 -4.10940 2.09507 2.52842 3.28826 3.35816 3.40478 3.64504 4.15637 4.44377 4.53182 4.63362 5.23568 5.26211 5.27608 5.31610 5.52091 5.60568 5.63820 5.73128 5.93336 5.94335 6.01647 6.08531 6.15829 6.18360 6.33298 6.38524 6.66182 6.69975 6.74385 6.99989 7.03623 7.32357 7.38319 7.42146 7.67229 7.87349 8.18871 8.24273 8.36219 8.43093 8.65749 8.99863 9.55806 11.01113 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020253 B = 0.006400 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.201081 B = 4373.985992 C = 5149.772537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.327 6.327 3 C 0.084 3.916 4 C -0.269 4.269 5 C 0.230 3.770 6 N -0.610 5.610 7 C 0.253 3.747 8 C -0.526 4.526 9 H 0.059 0.941 10 C 0.061 3.939 11 N -0.896 5.896 12 Si 0.893 3.107 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.153 3.847 17 C -0.176 4.176 18 C -0.176 4.176 19 C -0.172 4.172 20 C -0.118 4.118 21 C 0.114 3.886 22 N -0.891 5.891 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.049 0.951 26 H 0.142 0.858 27 H 0.034 0.966 28 H 0.027 0.973 29 H 0.263 0.737 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.135 0.865 38 H 0.117 0.883 39 H 0.388 0.612 40 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 -13.858 1.650 14.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.241 6.241 3 C 0.036 3.964 4 C -0.293 4.293 5 C 0.124 3.876 6 N -0.318 5.318 7 C 0.133 3.867 8 C -0.565 4.565 9 H 0.077 0.923 10 C -0.141 4.141 11 N -0.536 5.536 12 Si 0.721 3.279 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C 0.048 3.952 17 C -0.234 4.234 18 C -0.234 4.234 19 C -0.195 4.195 20 C -0.142 4.142 21 C 0.013 3.987 22 N -0.435 5.435 23 H 0.068 0.932 24 H 0.108 0.892 25 H 0.068 0.932 26 H 0.159 0.841 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.153 0.847 38 H 0.135 0.865 39 H 0.215 0.785 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.726 -13.572 1.714 14.473 hybrid contribution 0.218 0.448 -1.013 1.129 sum -4.508 -13.124 0.701 13.894 Atomic orbital electron populations 1.22880 0.79562 1.02679 1.01038 1.85895 1.20379 1.27557 1.90259 1.18107 0.90031 0.83811 1.04428 1.21032 0.99934 0.90760 1.17562 1.17416 0.90548 0.85891 0.93764 1.47143 1.03265 1.04522 1.76881 1.19219 0.92959 0.77900 0.96586 1.21633 1.38259 1.03417 0.93227 0.92258 1.24954 0.95697 0.96684 0.96775 1.69928 1.41741 1.13497 1.28409 0.86572 0.77858 0.78865 0.84616 1.20746 1.21191 1.19854 1.20694 0.81813 0.99568 0.93154 1.22463 1.00237 1.01603 0.99061 1.22512 0.99872 1.01755 0.99283 1.20684 0.92166 0.98652 1.08016 1.20176 0.98709 0.89979 1.05293 1.16807 0.87108 0.87509 1.07304 1.42027 1.07157 1.05038 1.89311 0.93184 0.89205 0.93234 0.84079 0.94838 0.95494 0.92773 0.89798 0.91661 0.92964 0.91834 0.92388 0.92737 0.91829 0.84748 0.86492 0.78519 0.78090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.33 -4.92 9.74 -19.78 -0.19 -5.11 16 3 C 0.08 1.45 6.70 -39.10 -0.26 1.19 16 4 C -0.27 -4.78 6.05 -39.27 -0.24 -5.02 16 5 C 0.23 4.67 6.14 -83.68 -0.51 4.16 16 6 N -0.61 -12.86 2.52 -165.49 -0.42 -13.28 16 7 C 0.25 6.31 4.76 -5.19 -0.02 6.28 16 8 C -0.53 -14.26 9.33 -34.44 -0.32 -14.58 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.90 -25.72 13.29 55.43 0.74 -24.98 16 12 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 C 0.15 2.71 3.27 -67.93 -0.22 2.49 16 17 C -0.18 -2.81 8.91 37.16 0.33 -2.48 16 18 C -0.18 -2.61 9.07 37.16 0.34 -2.27 16 19 C -0.17 -3.56 9.16 -39.36 -0.36 -3.92 16 20 C -0.12 -2.13 9.89 -39.43 -0.39 -2.52 16 21 C 0.11 1.95 6.77 -83.44 -0.57 1.38 16 22 N -0.89 -12.08 9.11 32.56 0.30 -11.78 16 23 H 0.05 0.56 7.67 -51.93 -0.40 0.16 16 24 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 26 H 0.14 2.23 1.36 -52.49 -0.07 2.16 16 27 H 0.03 0.89 6.44 -51.93 -0.33 0.55 16 28 H 0.03 0.71 7.96 -51.93 -0.41 0.30 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.08 1.56 7.84 -51.93 -0.41 1.15 16 31 H 0.06 1.01 4.66 -51.93 -0.24 0.77 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.92 4.86 -51.93 -0.25 0.67 16 37 H 0.13 3.05 6.24 -52.49 -0.33 2.72 16 38 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.39 4.40 8.85 -40.82 -0.36 4.04 16 40 H 0.39 4.91 8.19 -40.82 -0.33 4.58 16 LS Contribution 317.42 15.07 4.78 4.78 Total: -1.00 -29.59 317.42 -6.77 -36.36 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -5.62 Total: 9.99 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -1.33 Total: -12.33 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.62 Total: -50.04 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.19 Total: -5.11 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.59 -6.77 -36.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111053633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.681 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds