Wall clock time and date at job start Mon Mar 30 2020 07:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00163 * 2 1 4 4 C 1.52996 * 109.47437 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47600 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47600 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47369 * 180.02562 * 6 5 4 8 8 C 1.39856 * 120.00178 * 179.97438 * 7 6 5 9 9 C 1.39607 * 119.83665 * 0.29139 * 8 7 6 10 10 C 1.38057 * 120.54605 * 180.25945 * 9 8 7 11 11 C 1.38742 * 120.22089 * 359.44422 * 10 9 8 12 12 N 1.38865 * 120.16205 * 180.25283 * 11 10 9 13 13 C 1.41561 * 119.66989 * 0.27833 * 11 10 9 14 14 C 1.41030 * 120.26162 * 180.02562 * 13 11 10 15 15 H 1.07996 * 120.00086 * 334.21764 * 14 13 11 16 16 C 1.39885 * 119.99952 * 154.22763 * 14 13 11 17 17 N 1.30904 * 119.99951 * 342.94478 * 16 14 13 18 18 Si 1.86797 * 119.99805 * 162.93930 * 16 14 13 19 19 H 1.48501 * 109.46778 * 94.64058 * 18 16 14 20 20 H 1.48498 * 109.47154 * 214.63504 * 18 16 14 21 21 H 1.48499 * 109.47596 * 334.64030 * 18 16 14 22 22 C 1.38005 * 119.84128 * 179.97438 * 8 7 6 23 23 H 1.09001 * 109.46886 * 60.00383 * 1 2 3 24 24 H 1.08996 * 109.47077 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47365 * 300.00506 * 1 2 3 26 26 H 1.09005 * 109.47576 * 59.99938 * 3 2 1 27 27 H 1.09004 * 109.46955 * 299.99922 * 3 2 1 28 28 H 1.08994 * 109.47270 * 59.99576 * 4 3 2 29 29 H 1.09004 * 109.46999 * 299.99913 * 4 3 2 30 30 H 1.09004 * 109.46990 * 59.99657 * 5 4 3 31 31 H 1.09004 * 109.46926 * 300.00021 * 5 4 3 32 32 H 1.08994 * 109.47270 * 59.99640 * 6 5 4 33 33 H 1.09004 * 109.46999 * 299.99977 * 6 5 4 34 34 H 0.96997 * 120.00002 * 359.97438 * 7 6 5 35 35 H 1.08001 * 119.72748 * 0.02562 * 9 8 7 36 36 H 1.07998 * 119.89000 * 179.72131 * 10 9 8 37 37 H 0.96999 * 119.99792 * 0.02562 * 12 11 10 38 38 H 0.97000 * 119.99906 * 179.97438 * 12 11 10 39 39 H 0.97002 * 119.99867 * 180.02562 * 17 16 14 40 40 H 1.08000 * 120.11561 * 0.04412 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6830 2.4615 0.0013 7 7 6.2789 3.7998 0.0013 8 6 7.6698 3.9461 0.0029 9 6 8.4871 2.8143 -0.0016 10 6 9.8618 2.9416 0.0053 11 6 10.4467 4.1997 0.0052 12 7 11.8295 4.3263 0.0069 13 6 9.6266 5.3536 0.0040 14 6 10.2079 6.6386 0.0034 15 1 11.1975 6.7838 0.4106 16 6 9.5024 7.7251 -0.5245 17 7 8.4729 7.5194 -1.3063 18 14 10.0295 9.4694 -0.1135 19 1 10.9279 9.9793 -1.1803 20 1 8.8300 10.3396 -0.0188 21 1 10.7497 9.4760 1.1852 22 6 8.2276 5.2084 0.0024 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8574 0.6435 -0.8890 29 1 3.8567 0.6439 0.8909 30 1 3.8358 3.1238 0.8895 31 1 3.8365 3.1227 -0.8905 32 1 6.0053 1.9199 -0.8879 33 1 6.0039 1.9213 0.8920 34 1 5.7087 4.5846 0.0002 35 1 8.0404 1.8310 -0.0068 36 1 10.4841 2.0589 0.0062 37 1 12.3891 3.5340 0.0077 38 1 12.2359 5.2071 0.0065 39 1 7.9839 8.2729 -1.6726 40 1 7.5921 6.0816 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127330138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:35 Heat of formation + Delta-G solvation = -38.256994 kcal Electronic energy + Delta-G solvation = -19039.880494 eV Core-core repulsion = 16046.548007 eV Total energy + Delta-G solvation = -2993.332487 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.27631 -37.89332 -36.00747 -33.83074 -33.41999 -31.43754 -29.39127 -28.56509 -26.69084 -25.42581 -24.66268 -22.73032 -21.53586 -20.59792 -19.60525 -17.03976 -16.58138 -16.45207 -15.96141 -15.45694 -15.23123 -15.00716 -14.88933 -14.59078 -14.07728 -13.34750 -12.89957 -12.41733 -12.31365 -12.09723 -12.04128 -11.70006 -11.61781 -11.37661 -11.30701 -11.06758 -10.95744 -10.88610 -10.76374 -10.35364 -9.88455 -9.85538 -9.67089 -9.29364 -9.02144 -7.72911 -7.20085 -6.60241 -5.50804 -4.03810 2.92209 3.14118 3.18675 3.33025 3.50443 3.51133 4.04801 4.50406 4.81696 4.83864 4.86224 5.07361 5.07843 5.21349 5.31688 5.36651 5.42421 5.46347 5.59732 5.81308 5.86551 5.95405 6.04248 6.34645 6.37210 6.40255 6.67205 6.94012 7.14716 7.18210 7.34046 7.51710 7.73026 7.91314 8.02753 8.14679 8.48445 8.78255 8.92801 8.96712 9.02669 9.28646 9.37025 10.39025 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.024872 B = 0.003475 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.496839 B = 8054.911281 C = 9075.754298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.061 3.939 4 C -0.114 4.114 5 C -0.127 4.127 6 C 0.141 3.859 7 N -0.765 5.765 8 C 0.177 3.823 9 C -0.255 4.255 10 C -0.153 4.153 11 C 0.085 3.915 12 N -0.889 5.889 13 C 0.095 3.905 14 C -0.464 4.464 15 H 0.071 0.929 16 C 0.077 3.923 17 N -0.800 5.800 18 Si 0.900 3.100 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.201 4.201 23 H 0.040 0.960 24 H 0.084 0.916 25 H 0.040 0.960 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.387 0.613 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.374 0.626 38 H 0.388 0.612 39 H 0.274 0.726 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.661 -7.459 1.810 13.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.015 4.015 4 C -0.153 4.153 5 C -0.165 4.165 6 C 0.015 3.985 7 N -0.400 5.400 8 C 0.078 3.922 9 C -0.279 4.279 10 C -0.177 4.177 11 C -0.016 4.016 12 N -0.432 5.432 13 C 0.089 3.911 14 C -0.495 4.495 15 H 0.089 0.911 16 C -0.139 4.139 17 N -0.426 5.426 18 Si 0.725 3.275 19 H -0.200 1.200 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.226 4.226 23 H 0.059 0.941 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.220 0.780 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.199 0.801 38 H 0.216 0.784 39 H 0.085 0.915 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.818 -7.685 1.666 13.374 hybrid contribution 0.055 1.371 0.016 1.372 sum -10.763 -6.314 1.683 12.591 Atomic orbital electron populations 1.22725 0.81221 1.02621 0.99928 1.87873 1.19569 1.28436 1.95428 1.22592 0.94434 0.84340 1.00182 1.21417 0.92506 0.97662 1.03674 1.21667 0.95893 0.96351 1.02576 1.20932 0.90635 0.86710 1.00199 1.44316 1.03897 1.05095 1.86686 1.17514 0.81677 0.94068 0.98928 1.19620 0.92621 0.94877 1.20768 1.19713 0.93985 0.93858 1.10156 1.17856 0.83624 0.93311 1.06843 1.41805 1.03694 1.08501 1.89174 1.16974 0.90810 0.90888 0.92387 1.19117 1.02287 0.92010 1.36125 0.91113 1.25746 0.94367 1.00856 0.92943 1.69894 1.16962 1.32904 1.22881 0.86446 0.78906 0.82322 0.79796 1.19953 1.20346 1.18757 1.20466 0.94756 0.93617 1.13752 0.94134 0.89736 0.94154 0.93313 0.93278 0.90872 0.90891 0.91508 0.91432 0.93538 0.93559 0.78023 0.89695 0.89771 0.80120 0.78361 0.91504 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.45 10.70 -35.23 -0.38 -4.83 16 3 C 0.06 0.62 5.94 37.16 0.22 0.84 16 4 C -0.11 -1.25 5.58 -26.74 -0.15 -1.40 16 5 C -0.13 -1.53 5.33 -26.74 -0.14 -1.67 16 6 C 0.14 2.22 4.90 -4.04 -0.02 2.20 16 7 N -0.76 -14.89 5.74 -58.64 -0.34 -15.23 16 8 C 0.18 4.20 6.64 -83.77 -0.56 3.64 16 9 C -0.25 -5.93 9.31 -39.14 -0.36 -6.30 16 10 C -0.15 -3.58 9.86 -39.46 -0.39 -3.97 16 11 C 0.08 2.09 6.79 -83.22 -0.56 1.52 16 12 N -0.89 -18.52 8.98 32.75 0.29 -18.22 16 13 C 0.09 2.55 5.57 -106.66 -0.59 1.95 16 14 C -0.46 -12.31 8.49 -37.91 -0.32 -12.63 16 15 H 0.07 1.78 6.69 -52.49 -0.35 1.43 16 16 C 0.08 1.95 5.14 -17.33 -0.09 1.87 16 17 N -0.80 -21.07 10.99 55.55 0.61 -20.46 16 18 Si 0.90 19.03 29.59 -169.99 -5.03 14.00 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 22 C -0.20 -5.30 8.50 -38.75 -0.33 -5.63 16 23 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.76 7.93 -51.93 -0.41 0.35 16 33 H 0.05 0.74 7.95 -51.93 -0.41 0.33 16 34 H 0.39 7.13 8.48 -40.82 -0.35 6.78 16 35 H 0.08 1.80 6.69 -52.49 -0.35 1.45 16 36 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.37 6.59 8.83 -40.82 -0.36 6.23 16 38 H 0.39 7.91 7.04 -40.82 -0.29 7.62 16 39 H 0.27 6.64 8.30 -40.82 -0.34 6.30 16 40 H 0.12 3.16 6.22 -52.49 -0.33 2.84 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -29.52 329.87 -8.27 -37.79 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -6.21 Total: 20.21 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -2.19 Total: -18.24 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.57 Total: -53.90 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.38 Total: -4.83 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.52 -8.27 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127330138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.470 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds