Wall clock time and date at job start Mon Mar 30 2020 07:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00136 * 2 1 4 4 C 1.53001 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47104 * 54.99865 * 4 3 2 6 6 C 1.52999 * 109.47043 * 294.99824 * 4 3 2 7 7 C 1.52995 * 109.46978 * 175.00105 * 4 3 2 8 8 N 1.46506 * 109.47246 * 185.00082 * 7 4 3 9 9 C 1.39846 * 120.00548 * 180.02562 * 8 7 4 10 10 C 1.39607 * 119.83516 * 0.28722 * 9 8 7 11 11 C 1.38056 * 120.54483 * 180.26154 * 10 9 8 12 12 C 1.38740 * 120.22498 * 359.44980 * 11 10 9 13 13 N 1.38860 * 120.16669 * 180.25429 * 12 11 10 14 14 C 1.41568 * 119.66705 * 0.27272 * 12 11 10 15 15 C 1.41025 * 120.26465 * 180.02562 * 14 12 11 16 16 H 1.08000 * 120.00049 * 333.62874 * 15 14 12 17 17 C 1.39884 * 119.99907 * 153.62145 * 15 14 12 18 18 N 1.30895 * 120.00173 * 343.97837 * 17 15 14 19 19 Si 1.86803 * 119.99694 * 163.97393 * 17 15 14 20 20 H 1.48495 * 109.47046 * 60.00596 * 19 17 15 21 21 H 1.48502 * 109.46681 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47380 * 300.00153 * 19 17 15 23 23 C 1.37996 * 119.84411 * 179.97438 * 9 8 7 24 24 H 1.08997 * 109.46969 * 59.99764 * 1 2 3 25 25 H 1.08996 * 109.46784 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47189 * 300.00275 * 1 2 3 27 27 H 1.09008 * 109.47192 * 59.99616 * 3 2 1 28 28 H 1.08999 * 109.47307 * 300.00166 * 3 2 1 29 29 H 1.08995 * 109.47477 * 179.97438 * 6 4 3 30 30 H 1.09003 * 109.47224 * 300.00497 * 6 4 3 31 31 H 1.09003 * 109.47255 * 59.99521 * 6 4 3 32 32 H 1.09001 * 109.47487 * 64.99791 * 7 4 3 33 33 H 1.09002 * 109.47363 * 304.99547 * 7 4 3 34 34 H 0.97007 * 119.99546 * 359.97438 * 8 7 4 35 35 H 1.07998 * 119.73143 * 0.02562 * 10 9 8 36 36 H 1.08004 * 119.88860 * 179.72377 * 11 10 9 37 37 H 0.97002 * 120.00307 * 359.97438 * 13 12 11 38 38 H 0.96999 * 120.00104 * 179.97438 * 13 12 11 39 39 H 0.97004 * 120.00145 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.11315 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8515 0.5682 -0.8409 6 6 3.9952 0.5370 1.3083 7 6 4.1574 2.5769 -0.1250 8 7 5.6123 2.4529 -0.2445 9 6 6.4037 3.5989 -0.3716 10 6 5.8043 4.8597 -0.3782 11 6 6.5710 6.0004 -0.5083 12 6 7.9504 5.9055 -0.6227 13 7 8.7209 7.0539 -0.7482 14 6 8.5685 4.6319 -0.6113 15 6 9.9696 4.5208 -0.7263 16 1 10.5328 5.2915 -1.2313 17 6 10.6300 3.4123 -0.1859 18 7 10.0202 2.6468 0.6834 19 14 12.3820 3.0243 -0.7051 20 1 13.2643 4.1689 -0.3639 21 1 12.8510 1.8079 0.0060 22 1 12.4231 2.7873 -2.1706 23 6 7.7738 3.4783 -0.4834 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6886 1.8465 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 5.0817 0.4505 1.3087 30 1 3.6791 1.1534 2.1499 31 1 3.5521 -0.4549 1.3980 32 1 3.9143 3.1647 0.7601 33 1 3.7611 3.0732 -1.0109 34 1 6.0267 1.5759 -0.2347 35 1 4.7316 4.9433 -0.2846 36 1 6.0958 6.9702 -0.5166 37 1 8.2949 7.9253 -0.7564 38 1 9.6851 6.9847 -0.8277 39 1 10.4780 1.8779 1.0578 40 1 8.2345 2.5015 -0.4724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127341875.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:45 Heat of formation + Delta-G solvation = -34.148217 kcal Electronic energy + Delta-G solvation = -19559.482016 eV Core-core repulsion = 16566.327699 eV Total energy + Delta-G solvation = -2993.154317 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.51253 -37.81153 -36.05655 -33.65374 -33.39782 -30.98351 -29.38686 -27.48792 -27.03707 -25.83427 -24.77687 -23.84364 -21.27910 -20.01531 -19.62548 -17.10867 -16.61550 -16.10707 -15.92093 -15.44136 -15.32645 -14.72583 -14.65039 -14.40606 -13.95266 -13.10747 -12.85824 -12.50211 -12.47725 -12.25870 -11.92248 -11.71822 -11.64622 -11.33417 -11.16044 -10.99434 -10.96430 -10.81211 -10.58459 -10.34858 -9.86015 -9.77557 -9.68402 -9.30006 -9.02322 -7.73468 -7.19414 -6.58704 -5.50891 -4.04217 2.94600 3.14364 3.17195 3.33542 3.50731 3.58224 4.05540 4.56546 4.83718 4.89678 5.00988 5.11406 5.16125 5.23503 5.42015 5.45211 5.47048 5.59699 5.71629 5.90269 5.98240 6.09017 6.19025 6.36163 6.39219 6.46984 6.65468 7.03297 7.14745 7.17794 7.34238 7.51584 7.72765 7.90563 8.02405 8.14873 8.48350 8.77859 8.92716 8.96593 9.02732 9.28250 9.36641 10.40363 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.023835 B = 0.004225 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.482440 B = 6626.316731 C = 7623.213391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.069 3.931 4 C -0.101 4.101 5 H 0.081 0.919 6 C -0.141 4.141 7 C 0.147 3.853 8 N -0.760 5.760 9 C 0.177 3.823 10 C -0.255 4.255 11 C -0.153 4.153 12 C 0.085 3.915 13 N -0.889 5.889 14 C 0.096 3.904 15 C -0.465 4.465 16 H 0.070 0.930 17 C 0.077 3.923 18 N -0.800 5.800 19 Si 0.902 3.098 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.267 1.267 23 C -0.200 4.200 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.388 0.612 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.374 0.626 38 H 0.388 0.612 39 H 0.275 0.725 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.812 -3.078 -0.401 12.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.008 4.008 4 C -0.119 4.119 5 H 0.099 0.901 6 C -0.198 4.198 7 C 0.021 3.979 8 N -0.396 5.396 9 C 0.079 3.921 10 C -0.279 4.279 11 C -0.177 4.177 12 C -0.016 4.016 13 N -0.432 5.432 14 C 0.091 3.909 15 C -0.496 4.496 16 H 0.088 0.912 17 C -0.139 4.139 18 N -0.427 5.427 19 Si 0.727 3.273 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.192 1.192 23 C -0.225 4.225 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.222 0.778 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.199 0.801 38 H 0.216 0.784 39 H 0.086 0.914 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.867 -3.444 -0.222 12.359 hybrid contribution 0.860 0.041 -0.118 0.869 sum -11.008 -3.403 -0.340 11.527 Atomic orbital electron populations 1.22715 0.81362 1.02513 0.99886 1.87871 1.19352 1.28236 1.95404 1.22508 0.93646 0.84358 1.00286 1.21305 0.92777 0.97791 1.00073 0.90062 1.21748 1.01627 1.00421 0.96043 1.20876 0.82955 0.94115 0.99924 1.44267 1.03215 1.06374 1.85724 1.17501 0.90373 0.85428 0.98791 1.19602 0.96661 0.91074 1.20591 1.19701 0.91842 0.96143 1.10047 1.17865 0.89909 0.87213 1.06641 1.41807 1.08393 1.04638 1.88342 1.16962 0.92948 0.88553 0.92473 1.19088 0.92085 1.05360 1.33114 0.91176 1.25737 0.99638 0.95465 0.93064 1.69869 1.38274 1.13775 1.20769 0.86491 0.82707 0.78332 0.79764 1.19401 1.20624 1.19178 1.20476 0.89378 0.98950 1.13656 0.94185 0.89825 0.94196 0.93102 0.93146 0.92048 0.92901 0.92383 0.93447 0.93610 0.77823 0.89791 0.89829 0.80138 0.78351 0.91412 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.71 10.24 -35.23 -0.36 -5.07 16 3 C 0.07 0.80 5.32 37.16 0.20 1.00 16 4 C -0.10 -1.33 2.66 -90.62 -0.24 -1.57 16 5 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 6 C -0.14 -1.87 8.96 37.16 0.33 -1.54 16 7 C 0.15 2.32 4.30 -4.04 -0.02 2.30 16 8 N -0.76 -14.72 5.46 -58.64 -0.32 -15.04 16 9 C 0.18 4.18 6.64 -83.78 -0.56 3.62 16 10 C -0.26 -5.87 9.31 -39.14 -0.36 -6.23 16 11 C -0.15 -3.55 9.86 -39.46 -0.39 -3.94 16 12 C 0.08 2.07 6.79 -83.22 -0.56 1.51 16 13 N -0.89 -18.44 8.98 32.75 0.29 -18.14 16 14 C 0.10 2.57 5.57 -106.66 -0.59 1.97 16 15 C -0.47 -12.32 8.48 -37.91 -0.32 -12.64 16 16 H 0.07 1.76 6.71 -52.49 -0.35 1.41 16 17 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 18 N -0.80 -21.07 10.97 55.54 0.61 -20.46 16 19 Si 0.90 19.09 29.59 -169.99 -5.03 14.06 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 C -0.20 -5.25 8.49 -38.76 -0.33 -5.58 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.87 7.18 -51.93 -0.37 0.50 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.73 7.82 -51.93 -0.41 0.33 16 32 H 0.05 0.76 7.93 -51.93 -0.41 0.35 16 33 H 0.05 0.72 7.95 -51.93 -0.41 0.31 16 34 H 0.39 7.25 7.66 -40.82 -0.31 6.93 16 35 H 0.08 1.75 6.69 -52.49 -0.35 1.39 16 36 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.37 6.55 8.83 -40.82 -0.36 6.19 16 38 H 0.39 7.90 7.06 -40.82 -0.29 7.61 16 39 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 40 H 0.12 3.18 6.22 -52.49 -0.33 2.85 16 LS Contribution 326.52 15.07 4.92 4.92 Total: -1.00 -28.97 326.52 -7.82 -36.80 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: -6.11 Total: 20.78 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -1.82 Total: -17.84 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.58 Total: -53.64 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.36 Total: -5.07 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.97 -7.82 -36.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127341875.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.647 kcal (2) G-P(sol) polarization free energy of solvation -28.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds