Wall clock time and date at job start Mon Mar 30 2020 06:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47228 * 2 1 4 4 H 1.09004 * 109.47217 * 54.74793 * 3 2 1 5 5 C 1.53000 * 109.47130 * 174.74966 * 3 2 1 6 6 O 1.42902 * 109.46915 * 55.00351 * 5 3 2 7 7 C 1.42898 * 113.99887 * 179.97438 * 6 5 3 8 8 N 1.46505 * 109.47413 * 294.75378 * 3 2 1 9 9 C 1.39846 * 120.00342 * 157.38182 * 8 3 2 10 10 C 1.39598 * 119.84030 * 354.82356 * 9 8 3 11 11 C 1.38057 * 120.54801 * 179.76459 * 10 9 8 12 12 C 1.38735 * 120.22142 * 0.51509 * 11 10 9 13 13 N 1.38868 * 120.16270 * 179.72610 * 12 11 10 14 14 C 1.41562 * 119.67188 * 359.74241 * 12 11 10 15 15 C 1.41026 * 120.26623 * 179.97438 * 14 12 11 16 16 H 1.08005 * 119.99607 * 28.65763 * 15 14 12 17 17 C 1.39886 * 120.00165 * 208.65708 * 15 14 12 18 18 N 1.30897 * 120.00015 * 12.71474 * 17 15 14 19 19 Si 1.86799 * 120.00128 * 192.71285 * 17 15 14 20 20 H 1.48506 * 109.47314 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47121 * 120.00029 * 19 17 15 22 22 H 1.48493 * 109.47314 * 240.00116 * 19 17 15 23 23 C 1.38010 * 119.83699 * 175.10449 * 9 8 3 24 24 H 1.09000 * 109.47040 * 305.11519 * 1 2 3 25 25 H 1.09002 * 109.47030 * 65.10897 * 1 2 3 26 26 H 1.08999 * 109.47245 * 185.11400 * 1 2 3 27 27 H 1.09000 * 109.46588 * 240.00120 * 2 1 3 28 28 H 1.08993 * 109.46870 * 119.99963 * 2 1 3 29 29 H 1.08999 * 109.47064 * 295.00078 * 5 3 2 30 30 H 1.09001 * 109.46771 * 174.99759 * 5 3 2 31 31 H 1.09002 * 109.47169 * 179.97438 * 7 6 5 32 32 H 1.09005 * 109.46978 * 59.99548 * 7 6 5 33 33 H 1.08996 * 109.47070 * 300.00209 * 7 6 5 34 34 H 0.97002 * 119.99367 * 337.37382 * 8 3 2 35 35 H 1.08003 * 119.72325 * 0.02562 * 10 9 8 36 36 H 1.08001 * 119.88642 * 180.26182 * 11 10 9 37 37 H 0.96997 * 119.99642 * 180.02562 * 13 12 11 38 38 H 0.96993 * 119.99918 * 0.02562 * 13 12 11 39 39 H 0.96998 * 120.00207 * 179.97438 * 18 17 15 40 40 H 1.07993 * 120.12115 * 359.95149 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6020 1.9828 0.8392 5 6 3.5644 1.4444 0.1320 6 8 4.1331 0.6390 -0.9024 7 6 5.5602 0.5738 -0.8699 8 7 1.6576 2.0957 -1.2543 9 6 1.5748 3.4902 -1.3196 10 6 1.7508 4.2514 -0.1627 11 6 1.6769 5.6291 -0.2112 12 6 1.4154 6.2725 -1.4123 13 7 1.3357 7.6581 -1.4586 14 6 1.2301 5.5095 -2.5902 15 6 0.9632 6.1506 -3.8176 16 1 1.3349 7.1485 -3.9977 17 6 0.2171 5.4939 -4.8020 18 7 -0.4408 4.4019 -4.5050 19 14 0.1595 6.1753 -6.5403 20 1 0.9821 7.4094 -6.6158 21 1 0.6965 5.1644 -7.4863 22 1 -1.2454 6.4936 -6.9009 23 6 1.3136 4.1068 -2.5263 24 1 -0.3633 0.5911 0.8406 25 1 -0.3633 0.4325 -0.9322 26 1 -0.3634 -1.0236 0.0916 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8454 1.0392 1.1041 30 1 3.9354 2.4655 0.0429 31 1 5.9138 -0.0562 -1.6861 32 1 5.8830 0.1508 0.0814 33 1 5.9723 1.5769 -0.9800 34 1 1.4620 1.5609 -2.0396 35 1 1.9506 3.7586 0.7773 36 1 1.8189 6.2077 0.6895 37 1 1.1525 8.1055 -2.2996 38 1 1.4633 8.1786 -0.6501 39 1 -0.9585 3.9468 -5.1874 40 1 1.1742 3.5146 -3.4186 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127416636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:54 Heat of formation + Delta-G solvation = -31.012175 kcal Electronic energy + Delta-G solvation = -20262.043960 eV Core-core repulsion = 17269.025632 eV Total energy + Delta-G solvation = -2993.018328 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.54122 -37.45111 -35.75963 -33.41872 -33.20033 -30.66950 -29.41980 -28.77402 -26.35552 -25.51439 -24.76409 -23.09947 -21.43007 -20.23411 -19.42223 -17.15855 -16.18996 -16.04904 -15.50125 -15.38130 -15.12124 -14.93516 -14.57997 -14.36092 -13.47119 -12.92408 -12.81105 -12.45434 -12.30144 -12.13127 -11.79782 -11.71271 -11.31946 -11.29374 -11.16059 -11.01820 -10.94663 -10.65169 -10.45451 -10.27168 -9.83087 -9.69521 -9.38292 -9.23714 -9.03841 -7.70031 -7.14871 -6.54534 -5.46688 -4.03759 2.93599 3.16905 3.20925 3.33408 3.51921 4.05520 4.07879 4.52235 4.87111 5.08504 5.30307 5.39626 5.42909 5.45585 5.50315 5.64396 5.75379 5.83232 5.91143 5.93188 6.03710 6.15879 6.23898 6.40228 6.46320 6.58049 6.66462 7.17196 7.19638 7.36238 7.41508 7.54999 7.76799 7.91792 8.05077 8.19561 8.51061 8.81511 8.97429 9.01028 9.05373 9.29773 9.38428 10.44596 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.005697 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.845032 B = 4913.671341 C = 5310.895901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.167 3.833 4 H 0.083 0.917 5 C 0.044 3.956 6 O -0.380 6.380 7 C 0.033 3.967 8 N -0.747 5.747 9 C 0.180 3.820 10 C -0.257 4.257 11 C -0.154 4.154 12 C 0.085 3.915 13 N -0.889 5.889 14 C 0.094 3.906 15 C -0.465 4.465 16 H 0.070 0.930 17 C 0.075 3.925 18 N -0.804 5.804 19 Si 0.902 3.098 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.278 1.278 23 C -0.194 4.194 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.039 0.961 34 H 0.390 0.610 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.388 0.612 38 H 0.373 0.627 39 H 0.273 0.727 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.026 -6.157 6.419 10.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C 0.059 3.941 4 H 0.101 0.899 5 C -0.035 4.035 6 O -0.299 6.299 7 C -0.064 4.064 8 N -0.380 5.380 9 C 0.081 3.919 10 C -0.281 4.281 11 C -0.178 4.178 12 C -0.016 4.016 13 N -0.432 5.432 14 C 0.089 3.911 15 C -0.496 4.496 16 H 0.088 0.912 17 C -0.140 4.140 18 N -0.431 5.431 19 Si 0.727 3.273 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.204 1.204 23 C -0.219 4.219 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.223 0.777 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.217 0.783 38 H 0.198 0.802 39 H 0.084 0.916 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.792 -6.521 6.338 10.279 hybrid contribution 0.074 0.594 -0.834 1.026 sum 4.866 -5.927 5.504 9.439 Atomic orbital electron populations 1.21740 0.95593 1.00604 1.02680 1.21653 0.96005 0.96111 1.02368 1.20716 0.90393 0.93025 0.89939 0.89936 1.23259 0.96227 0.94768 0.89218 1.87886 1.18979 1.70380 1.52661 1.22668 0.82266 1.00705 1.00774 1.44295 1.79303 1.03477 1.10957 1.17523 0.98354 0.81860 0.94137 1.19616 1.20363 0.92891 0.95239 1.19694 1.09664 0.93789 0.94686 1.17885 1.06429 0.83631 0.93628 1.41806 1.86091 1.03989 1.11282 1.16987 0.92287 0.91140 0.90664 1.19144 1.30298 1.01653 0.98522 0.91204 1.25725 0.93730 0.94517 1.00016 1.69869 1.22829 1.16202 1.34208 0.86379 0.78373 0.79792 0.82722 1.18831 1.20111 1.20382 1.20507 1.11922 0.94412 0.95015 0.92971 0.91985 0.93449 0.91072 0.91875 0.94142 0.92573 0.90192 0.94834 0.94282 0.77659 0.89829 0.89918 0.78350 0.80179 0.91606 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.74 37.16 0.36 -1.63 16 2 C -0.12 -1.67 5.17 -26.73 -0.14 -1.80 16 3 C 0.17 2.65 2.09 -67.93 -0.14 2.51 16 4 H 0.08 1.34 6.39 -51.93 -0.33 1.01 16 5 C 0.04 0.67 5.71 37.16 0.21 0.88 16 6 O -0.38 -5.98 9.87 -35.23 -0.35 -6.33 16 7 C 0.03 0.40 11.01 101.05 1.11 1.52 16 8 N -0.75 -14.51 4.78 -52.17 -0.25 -14.76 16 9 C 0.18 4.18 6.60 -83.78 -0.55 3.63 16 10 C -0.26 -5.79 8.91 -39.14 -0.35 -6.14 16 11 C -0.15 -3.54 9.86 -39.46 -0.39 -3.93 16 12 C 0.09 2.08 6.79 -83.22 -0.56 1.51 16 13 N -0.89 -18.40 8.98 32.75 0.29 -18.11 16 14 C 0.09 2.53 5.56 -106.66 -0.59 1.94 16 15 C -0.46 -12.35 8.43 -37.91 -0.32 -12.67 16 16 H 0.07 1.78 6.78 -52.48 -0.36 1.42 16 17 C 0.08 1.93 5.21 -17.33 -0.09 1.84 16 18 N -0.80 -21.32 10.94 55.54 0.61 -20.71 16 19 Si 0.90 19.29 29.58 -169.99 -5.03 14.26 16 20 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 C -0.19 -5.09 8.47 -38.75 -0.33 -5.42 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.94 7.90 -51.93 -0.41 0.53 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.01 7.74 -51.93 -0.40 0.61 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.96 7.83 -51.93 -0.41 0.55 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.39 7.61 8.59 -40.82 -0.35 7.26 16 35 H 0.08 1.69 6.16 -52.48 -0.32 1.37 16 36 H 0.08 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.39 7.92 7.10 -40.82 -0.29 7.63 16 38 H 0.37 6.54 8.83 -40.82 -0.36 6.18 16 39 H 0.27 6.69 8.30 -40.82 -0.34 6.35 16 40 H 0.12 3.22 6.28 -52.49 -0.33 2.89 16 LS Contribution 325.98 15.07 4.91 4.91 Total: -1.00 -28.64 325.98 -7.67 -36.31 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -6.08 Total: 22.18 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -1.78 Total: -17.75 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.65 Total: -53.58 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.35 Total: -6.33 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.64 -7.67 -36.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127416636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.294 kcal (2) G-P(sol) polarization free energy of solvation -28.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds