Wall clock time and date at job start Mon Mar 30 2020 06:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47228 * 2 1 4 4 H 1.09004 * 109.47217 * 54.74793 * 3 2 1 5 5 C 1.53000 * 109.47130 * 174.74966 * 3 2 1 6 6 O 1.42902 * 109.46915 * 55.00351 * 5 3 2 7 7 C 1.42898 * 113.99887 * 179.97438 * 6 5 3 8 8 N 1.46505 * 109.47413 * 294.75378 * 3 2 1 9 9 C 1.39846 * 120.00342 * 157.38182 * 8 3 2 10 10 C 1.39598 * 119.84030 * 354.82356 * 9 8 3 11 11 C 1.38057 * 120.54801 * 179.76459 * 10 9 8 12 12 C 1.38735 * 120.22142 * 0.51509 * 11 10 9 13 13 N 1.38868 * 120.16270 * 179.72610 * 12 11 10 14 14 C 1.41562 * 119.67188 * 359.74241 * 12 11 10 15 15 C 1.41026 * 120.26623 * 179.97438 * 14 12 11 16 16 H 1.08005 * 119.99607 * 28.65763 * 15 14 12 17 17 C 1.39886 * 120.00165 * 208.65708 * 15 14 12 18 18 N 1.30897 * 120.00015 * 12.71474 * 17 15 14 19 19 Si 1.86799 * 120.00128 * 192.71285 * 17 15 14 20 20 H 1.48506 * 109.47314 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47121 * 120.00029 * 19 17 15 22 22 H 1.48493 * 109.47314 * 240.00116 * 19 17 15 23 23 C 1.38010 * 119.83699 * 175.10449 * 9 8 3 24 24 H 1.09000 * 109.47040 * 305.11519 * 1 2 3 25 25 H 1.09002 * 109.47030 * 65.10897 * 1 2 3 26 26 H 1.08999 * 109.47245 * 185.11400 * 1 2 3 27 27 H 1.09000 * 109.46588 * 240.00120 * 2 1 3 28 28 H 1.08993 * 109.46870 * 119.99963 * 2 1 3 29 29 H 1.08999 * 109.47064 * 295.00078 * 5 3 2 30 30 H 1.09001 * 109.46771 * 174.99759 * 5 3 2 31 31 H 1.09002 * 109.47169 * 179.97438 * 7 6 5 32 32 H 1.09005 * 109.46978 * 59.99548 * 7 6 5 33 33 H 1.08996 * 109.47070 * 300.00209 * 7 6 5 34 34 H 0.97002 * 119.99367 * 337.37382 * 8 3 2 35 35 H 1.08003 * 119.72325 * 0.02562 * 10 9 8 36 36 H 1.08001 * 119.88642 * 180.26182 * 11 10 9 37 37 H 0.96997 * 119.99642 * 180.02562 * 13 12 11 38 38 H 0.96993 * 119.99918 * 0.02562 * 13 12 11 39 39 H 0.96998 * 120.00207 * 179.97438 * 18 17 15 40 40 H 1.07993 * 120.12115 * 359.95149 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6020 1.9828 0.8392 5 6 3.5644 1.4444 0.1320 6 8 4.1331 0.6390 -0.9024 7 6 5.5602 0.5738 -0.8699 8 7 1.6576 2.0957 -1.2543 9 6 1.5748 3.4902 -1.3196 10 6 1.7508 4.2514 -0.1627 11 6 1.6769 5.6291 -0.2112 12 6 1.4154 6.2725 -1.4123 13 7 1.3357 7.6581 -1.4586 14 6 1.2301 5.5095 -2.5902 15 6 0.9632 6.1506 -3.8176 16 1 1.3349 7.1485 -3.9977 17 6 0.2171 5.4939 -4.8020 18 7 -0.4408 4.4019 -4.5050 19 14 0.1595 6.1753 -6.5403 20 1 0.9821 7.4094 -6.6158 21 1 0.6965 5.1644 -7.4863 22 1 -1.2454 6.4936 -6.9009 23 6 1.3136 4.1068 -2.5263 24 1 -0.3633 0.5911 0.8406 25 1 -0.3633 0.4325 -0.9322 26 1 -0.3634 -1.0236 0.0916 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8454 1.0392 1.1041 30 1 3.9354 2.4655 0.0429 31 1 5.9138 -0.0562 -1.6861 32 1 5.8830 0.1508 0.0814 33 1 5.9723 1.5769 -0.9800 34 1 1.4620 1.5609 -2.0396 35 1 1.9506 3.7586 0.7773 36 1 1.8189 6.2077 0.6895 37 1 1.1525 8.1055 -2.2996 38 1 1.4633 8.1786 -0.6501 39 1 -0.9585 3.9468 -5.1874 40 1 1.1742 3.5146 -3.4186 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127416636.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:53 Heat of formation + Delta-G solvation = -49.472574 kcal Electronic energy + Delta-G solvation = -20262.844463 eV Core-core repulsion = 17269.025632 eV Total energy + Delta-G solvation = -2993.818831 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.05164 -38.95119 -37.14868 -35.30161 -34.74398 -32.16876 -31.28857 -30.07614 -27.84415 -26.83441 -26.58842 -24.27207 -23.18512 -21.82303 -21.01867 -18.93066 -17.82514 -17.48203 -17.10991 -16.73641 -16.58010 -16.30806 -16.21538 -15.68135 -14.86907 -14.43495 -14.23350 -14.00452 -13.77997 -13.73611 -13.32567 -13.19322 -12.99081 -12.85919 -12.69720 -12.33363 -12.31346 -12.08320 -11.91573 -11.65533 -11.54712 -11.28977 -11.06426 -10.93975 -10.51225 -9.34460 -9.07609 -8.45359 -7.23503 -5.99293 1.14133 1.41051 1.52334 1.54296 1.68035 2.28555 2.87285 2.97756 3.10307 3.79785 3.91637 3.98762 4.17448 4.28986 4.42757 4.50546 4.57579 4.63705 4.67885 4.70779 4.84190 4.86378 4.93574 5.05630 5.13262 5.27004 5.30644 5.39324 5.48815 5.48924 5.71475 5.93261 6.09963 6.20421 6.28597 6.37509 6.60696 7.01272 7.10970 7.19572 7.31068 7.50852 7.69611 8.55685 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.005697 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.845032 B = 4913.671341 C = 5310.895901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C 0.161 3.839 4 H 0.084 0.916 5 C 0.049 3.951 6 O -0.403 6.403 7 C 0.027 3.973 8 N -0.743 5.743 9 C 0.179 3.821 10 C -0.255 4.255 11 C -0.158 4.158 12 C 0.069 3.931 13 N -0.879 5.879 14 C 0.058 3.942 15 C -0.492 4.492 16 H 0.072 0.928 17 C 0.031 3.969 18 N -0.838 5.838 19 Si 0.974 3.026 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.272 1.272 23 C -0.220 4.220 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.031 0.969 34 H 0.386 0.614 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.389 0.611 38 H 0.390 0.610 39 H 0.277 0.723 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.683 -6.689 7.701 11.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C 0.055 3.945 4 H 0.102 0.898 5 C -0.030 4.030 6 O -0.322 6.322 7 C -0.069 4.069 8 N -0.376 5.376 9 C 0.078 3.922 10 C -0.279 4.279 11 C -0.183 4.183 12 C -0.033 4.033 13 N -0.423 5.423 14 C 0.053 3.947 15 C -0.524 4.524 16 H 0.090 0.910 17 C -0.181 4.181 18 N -0.466 5.466 19 Si 0.797 3.203 20 H -0.182 1.182 21 H -0.199 1.199 22 H -0.197 1.197 23 C -0.245 4.245 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.219 0.781 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.217 0.783 38 H 0.218 0.782 39 H 0.087 0.913 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.468 -7.056 7.658 11.761 hybrid contribution -0.074 0.682 -1.107 1.302 sum 5.394 -6.375 6.551 10.613 Atomic orbital electron populations 1.21711 0.95626 1.01739 1.01264 1.21591 0.95831 0.94396 1.03304 1.20982 0.91314 0.94198 0.88023 0.89844 1.23159 0.95289 0.93835 0.90681 1.87852 1.20907 1.70266 1.53199 1.22849 0.80523 1.00829 1.02685 1.44392 1.78741 1.02141 1.12289 1.17605 0.97400 0.83660 0.93504 1.19939 1.19086 0.93017 0.95877 1.20062 1.08672 0.94319 0.95207 1.18059 1.06686 0.85053 0.93513 1.41677 1.85624 1.02846 1.12184 1.17369 0.93512 0.91873 0.91920 1.19383 1.31338 1.02122 0.99526 0.91029 1.26542 0.93023 0.94744 1.03791 1.69964 1.23614 1.17496 1.35517 0.85279 0.78518 0.79099 0.77429 1.18224 1.19882 1.19705 1.20452 1.14023 0.94592 0.95409 0.92914 0.94579 0.91318 0.91812 0.89081 0.90914 0.94916 0.88903 0.92470 0.94993 0.78136 0.87219 0.87123 0.78295 0.78237 0.91295 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.74 71.98 0.70 -2.99 16 2 C -0.11 -2.82 5.17 30.59 0.16 -2.66 16 3 C 0.16 4.87 2.09 44.99 0.09 4.96 16 4 H 0.08 2.52 6.39 -2.38 -0.02 2.51 16 5 C 0.05 1.38 5.71 71.98 0.41 1.79 16 6 O -0.40 -12.05 9.87 -148.98 -1.47 -13.52 16 7 C 0.03 0.62 11.01 113.37 1.25 1.87 16 8 N -0.74 -29.06 4.78 -318.97 -1.52 -30.59 16 9 C 0.18 8.43 6.60 38.14 0.25 8.68 16 10 C -0.26 -11.24 8.91 22.56 0.20 -11.04 16 11 C -0.16 -7.09 9.86 22.35 0.22 -6.87 16 12 C 0.07 3.37 6.79 38.97 0.26 3.64 16 13 N -0.88 -35.95 8.98 -50.31 -0.45 -36.40 16 14 C 0.06 3.22 5.56 -21.18 -0.12 3.10 16 15 C -0.49 -26.91 8.43 23.35 0.20 -26.72 16 16 H 0.07 3.73 6.78 -2.91 -0.02 3.71 16 17 C 0.03 1.62 5.21 85.23 0.44 2.06 16 18 N -0.84 -46.08 10.94 21.82 0.24 -45.84 16 19 Si 0.97 40.37 29.58 68.60 2.03 42.40 16 20 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 C -0.22 -11.99 8.47 22.81 0.19 -11.79 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.03 1.08 7.90 -2.39 -0.02 1.06 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.71 7.74 -2.39 -0.02 1.69 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.03 1.08 7.83 -2.39 -0.02 1.06 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.39 15.53 8.59 -92.71 -0.80 14.74 16 35 H 0.11 4.19 6.16 -2.91 -0.02 4.17 16 36 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 37 H 0.39 15.85 7.10 -92.71 -0.66 15.19 16 38 H 0.39 13.10 8.83 -92.71 -0.82 12.28 16 39 H 0.28 14.02 8.30 -92.71 -0.77 13.25 16 40 H 0.09 5.38 6.28 -2.91 -0.02 5.36 16 Total: -1.00 -63.16 325.98 1.88 -61.28 By element: Atomic # 1 Polarization: 59.84 SS G_CDS: -1.21 Total: 58.64 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 4.27 Total: -35.96 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -1.74 Total: -112.83 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -1.47 Total: -13.52 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -63.16 1.88 -61.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127416636.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.804 kcal (2) G-P(sol) polarization free energy of solvation -63.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds