Wall clock time and date at job start Mon Mar 30 2020 07:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99878 * 2 1 4 4 C 1.53010 * 109.46753 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46907 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47242 * 54.99432 * 5 4 3 7 7 C 1.52998 * 109.47151 * 175.00077 * 5 4 3 8 8 N 1.46499 * 109.46865 * 294.99951 * 5 4 3 9 9 C 1.39856 * 120.00164 * 155.00160 * 8 5 4 10 10 C 1.39599 * 119.83417 * 359.97438 * 9 8 5 11 11 C 1.38064 * 120.54696 * 179.97438 * 10 9 8 12 12 C 1.38738 * 120.22018 * 359.78593 * 11 10 9 13 13 N 1.38860 * 120.16453 * 180.25163 * 12 11 10 14 14 C 1.41559 * 119.67068 * 0.48969 * 12 11 10 15 15 C 1.41030 * 120.26527 * 179.76214 * 14 12 11 16 16 H 1.08000 * 120.00240 * 329.08341 * 15 14 12 17 17 C 1.39888 * 119.99869 * 149.35478 * 15 14 12 18 18 N 1.30900 * 120.00362 * 162.17419 * 17 15 14 19 19 Si 1.86805 * 119.99959 * 342.17643 * 17 15 14 20 20 H 1.48507 * 109.46982 * 95.38819 * 19 17 15 21 21 H 1.48499 * 109.47035 * 215.38421 * 19 17 15 22 22 H 1.48498 * 109.47204 * 335.38704 * 19 17 15 23 23 C 1.38002 * 119.84393 * 179.97438 * 9 8 5 24 24 H 1.09002 * 109.46605 * 300.00197 * 1 2 3 25 25 H 1.09001 * 109.47118 * 59.99744 * 1 2 3 26 26 H 1.09000 * 109.46958 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47272 * 60.00641 * 3 2 1 28 28 H 1.08998 * 109.47332 * 300.00104 * 3 2 1 29 29 H 1.08994 * 109.46746 * 60.00273 * 4 3 2 30 30 H 1.08996 * 109.47114 * 299.99579 * 4 3 2 31 31 H 1.08993 * 109.47190 * 179.97438 * 7 5 4 32 32 H 1.08997 * 109.47057 * 300.00264 * 7 5 4 33 33 H 1.08999 * 109.46831 * 59.99585 * 7 5 4 34 34 H 0.97000 * 120.00437 * 335.00334 * 8 5 4 35 35 H 1.07996 * 119.73051 * 0.02562 * 10 9 8 36 36 H 1.08001 * 119.88723 * 180.02562 * 11 10 9 37 37 H 0.97004 * 120.00056 * 180.23549 * 13 12 11 38 38 H 0.96995 * 120.00090 * 0.24521 * 13 12 11 39 39 H 0.97000 * 120.00578 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.11368 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 6 4.1579 2.5823 0.0000 6 1 3.7674 3.1535 0.8422 7 6 5.6781 2.4637 0.1251 8 7 3.8228 3.2666 -1.2513 9 6 3.8014 4.6641 -1.3001 10 6 4.0995 5.4037 -0.1542 11 6 4.0834 6.7839 -0.1859 12 6 3.7740 7.4518 -1.3619 13 7 3.7632 8.8400 -1.3938 14 6 3.4645 6.7110 -2.5278 15 6 3.1433 7.3771 -3.7287 16 1 2.6525 8.3386 -3.6984 17 6 3.4553 6.7897 -4.9594 18 7 2.8688 7.2086 -6.0521 19 14 4.7091 5.4074 -5.0434 20 1 4.0068 4.0994 -5.0079 21 1 5.4847 5.5187 -6.3048 22 1 5.6322 5.5053 -3.8843 23 6 3.4858 5.3054 -2.4806 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8567 0.6439 -0.8909 30 1 3.8575 0.6436 0.8891 31 1 6.1215 3.4594 0.1251 32 1 5.9274 1.9545 1.0560 33 1 6.0684 1.8925 -0.7172 34 1 3.6156 2.7504 -2.0460 35 1 4.3456 4.8921 0.7645 36 1 4.3161 7.3454 0.7068 37 1 3.5432 9.3045 -2.2165 38 1 3.9757 9.3451 -0.5936 39 1 3.0849 6.8010 -6.9054 40 1 3.2562 4.7299 -3.3652 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127425401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:12 Heat of formation + Delta-G solvation = -53.410972 kcal Electronic energy + Delta-G solvation = -20037.644474 eV Core-core repulsion = 17043.654861 eV Total energy + Delta-G solvation = -2993.989613 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.17249 -39.05122 -37.71807 -35.31760 -34.80900 -32.19732 -31.94414 -30.30166 -27.80685 -27.24121 -26.51531 -24.08729 -23.52509 -22.05280 -21.10373 -19.09249 -18.12542 -17.63759 -17.22388 -17.18833 -16.61849 -16.42356 -16.11072 -15.86006 -14.98826 -14.68446 -14.44064 -14.15053 -14.11592 -13.82708 -13.64021 -13.32558 -13.14848 -12.79386 -12.57271 -12.43527 -12.39782 -12.21852 -12.06748 -11.78187 -11.68894 -11.52071 -11.26927 -10.88386 -10.64381 -9.47919 -9.34277 -8.77193 -7.47946 -6.14469 0.93843 1.21685 1.29187 1.53374 1.55606 2.19756 2.75377 2.77220 2.85577 3.69912 3.73445 3.99916 4.06223 4.16263 4.39484 4.44754 4.49073 4.51846 4.55392 4.68002 4.74709 4.81221 4.89084 4.93842 4.96379 5.03432 5.15723 5.16162 5.41272 5.43855 5.51400 5.70778 5.82150 6.01414 6.18855 6.21992 6.35968 6.69382 6.90443 6.98435 7.13662 7.32544 7.59533 8.31783 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.017186 B = 0.005786 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.835062 B = 4837.973921 C = 5366.864353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.062 3.938 4 C -0.113 4.113 5 C 0.158 3.842 6 H 0.078 0.922 7 C -0.162 4.162 8 N -0.756 5.756 9 C 0.195 3.805 10 C -0.241 4.241 11 C -0.144 4.144 12 C 0.082 3.918 13 N -0.879 5.879 14 C 0.051 3.949 15 C -0.475 4.475 16 H 0.060 0.940 17 C 0.048 3.952 18 N -0.866 5.866 19 Si 0.968 3.032 20 H -0.269 1.269 21 H -0.290 1.290 22 H -0.259 1.259 23 C -0.283 4.283 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.102 0.898 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.388 0.612 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.390 0.610 38 H 0.394 0.606 39 H 0.286 0.714 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.336 -11.275 12.476 16.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.015 4.015 4 C -0.151 4.151 5 C 0.053 3.947 6 H 0.096 0.904 7 C -0.220 4.220 8 N -0.389 5.389 9 C 0.094 3.906 10 C -0.265 4.265 11 C -0.168 4.168 12 C -0.020 4.020 13 N -0.422 5.422 14 C 0.045 3.955 15 C -0.506 4.506 16 H 0.078 0.922 17 C -0.164 4.164 18 N -0.494 5.494 19 Si 0.794 3.206 20 H -0.195 1.195 21 H -0.218 1.218 22 H -0.183 1.183 23 C -0.307 4.307 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.120 0.880 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.221 0.779 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.218 0.782 38 H 0.222 0.778 39 H 0.096 0.904 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.425 -11.515 12.399 16.981 hybrid contribution -0.143 0.322 -1.131 1.184 sum 1.282 -11.193 11.268 15.935 Atomic orbital electron populations 1.22905 0.79854 1.03811 1.00496 1.87791 1.21185 1.28702 1.95577 1.22541 0.94548 0.84007 1.00357 1.21716 0.92653 0.96300 1.04435 1.20787 0.94826 0.91816 0.87265 0.90362 1.22224 0.95454 1.01836 1.02533 1.44692 1.79733 1.02082 1.12356 1.17405 0.96339 0.83564 0.93283 1.20079 1.16528 0.92982 0.96923 1.20210 1.06776 0.94244 0.95570 1.17982 1.04664 0.84933 0.94462 1.41791 1.82786 1.02755 1.14844 1.17290 0.94117 0.91515 0.92565 1.19090 1.35981 1.05611 0.89953 0.92162 1.26603 0.96615 0.98352 0.94830 1.69771 1.37627 1.41402 1.00618 0.85428 0.79571 0.78586 0.76980 1.19490 1.21817 1.18308 1.20303 1.19767 0.93811 0.96850 0.93206 0.94272 0.88002 0.92835 0.94271 0.91067 0.88265 0.93467 0.89818 0.92899 0.77871 0.85954 0.86087 0.78250 0.77817 0.90408 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.41 -10.04 10.70 -148.98 -1.59 -11.64 16 3 C 0.06 1.47 5.83 71.99 0.42 1.89 16 4 C -0.11 -2.40 5.12 30.60 0.16 -2.25 16 5 C 0.16 3.92 2.27 44.99 0.10 4.02 16 6 H 0.08 1.94 6.47 -2.39 -0.02 1.93 16 7 C -0.16 -3.67 9.42 71.98 0.68 -2.99 16 8 N -0.76 -24.77 4.70 -318.97 -1.50 -26.27 16 9 C 0.20 7.99 6.63 38.13 0.25 8.24 16 10 C -0.24 -9.21 8.84 22.56 0.20 -9.01 16 11 C -0.14 -5.69 9.86 22.35 0.22 -5.47 16 12 C 0.08 3.72 6.79 38.97 0.26 3.99 16 13 N -0.88 -34.30 8.98 -50.31 -0.45 -34.75 16 14 C 0.05 2.60 5.11 -21.18 -0.11 2.49 16 15 C -0.48 -26.60 8.90 23.35 0.21 -26.40 16 16 H 0.06 3.55 7.05 -2.91 -0.02 3.53 16 17 C 0.05 2.63 5.41 85.23 0.46 3.09 16 18 N -0.87 -49.00 13.93 21.82 0.30 -48.70 16 19 Si 0.97 45.73 24.52 68.60 1.68 47.41 16 20 H -0.27 -12.15 6.72 99.48 0.67 -11.48 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.26 -12.65 6.86 99.48 0.68 -11.97 16 23 C -0.28 -13.63 6.98 22.81 0.16 -13.47 16 24 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 28 H 0.04 1.06 7.75 -2.39 -0.02 1.04 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.05 1.25 7.69 -2.39 -0.02 1.23 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.39 12.61 8.61 -92.71 -0.80 11.81 16 35 H 0.12 3.94 6.06 -2.91 -0.02 3.92 16 36 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 37 H 0.39 15.94 7.14 -92.71 -0.66 15.28 16 38 H 0.39 12.32 8.83 -92.71 -0.82 11.50 16 39 H 0.29 14.81 8.30 -92.71 -0.77 14.04 16 40 H 0.09 4.29 4.77 -2.91 -0.01 4.28 16 Total: -1.00 -62.84 321.52 1.43 -61.41 By element: Atomic # 1 Polarization: 47.94 SS G_CDS: -1.27 Total: 46.67 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 4.26 Total: -34.13 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -1.65 Total: -109.72 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -1.59 Total: -11.64 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.68 Total: 47.41 kcal Total: -62.84 1.43 -61.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127425401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.000 kcal (2) G-P(sol) polarization free energy of solvation -62.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds