Wall clock time and date at job start Mon Mar 30 2020 06:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00283 * 2 1 4 4 C 1.52999 * 109.47090 * 59.99452 * 3 2 1 5 5 C 1.53003 * 109.46695 * 299.99347 * 3 2 1 6 6 C 1.53003 * 109.47057 * 179.97438 * 3 2 1 7 7 N 1.46504 * 109.47069 * 64.99539 * 6 3 2 8 8 C 1.39854 * 119.99480 * 179.97438 * 7 6 3 9 9 C 1.39599 * 119.84247 * 359.97438 * 8 7 6 10 10 C 1.38055 * 120.54915 * 179.97438 * 9 8 7 11 11 C 1.38736 * 120.22174 * 0.02562 * 10 9 8 12 12 N 1.38861 * 120.16293 * 179.97438 * 11 10 9 13 13 C 1.41563 * 119.67317 * 359.97438 * 11 10 9 14 14 C 1.41028 * 120.26751 * 180.02562 * 13 11 10 15 15 H 1.07995 * 119.99616 * 25.46245 * 14 13 11 16 16 C 1.39885 * 119.99939 * 205.45946 * 14 13 11 17 17 N 1.30905 * 119.99833 * 15.16030 * 16 14 13 18 18 Si 1.86799 * 119.99825 * 195.15825 * 16 14 13 19 19 H 1.48501 * 109.46951 * 60.00101 * 18 16 14 20 20 H 1.48504 * 109.46792 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47036 * 300.00010 * 18 16 14 22 22 C 1.38009 * 119.83606 * 179.72902 * 8 7 6 23 23 H 1.08998 * 109.47373 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47192 * 300.00849 * 1 2 3 25 25 H 1.09004 * 109.46609 * 60.00386 * 1 2 3 26 26 H 1.09000 * 109.46822 * 180.02562 * 4 3 2 27 27 H 1.09000 * 109.47249 * 300.00078 * 4 3 2 28 28 H 1.08994 * 109.47016 * 60.00633 * 4 3 2 29 29 H 1.08991 * 109.47428 * 300.00123 * 5 3 2 30 30 H 1.09000 * 109.47123 * 60.00241 * 5 3 2 31 31 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 32 32 H 1.09003 * 109.46921 * 184.99880 * 6 3 2 33 33 H 1.09003 * 109.46955 * 304.99593 * 6 3 2 34 34 H 0.96993 * 120.00053 * 359.97438 * 7 6 3 35 35 H 1.08004 * 119.72590 * 359.97438 * 9 8 7 36 36 H 1.08004 * 119.88727 * 180.02562 * 10 9 8 37 37 H 0.97001 * 120.00296 * 0.02562 * 12 11 10 38 38 H 0.97005 * 120.00074 * 179.97438 * 12 11 10 39 39 H 0.97002 * 119.99521 * 180.02562 * 17 16 14 40 40 H 1.08001 * 120.11416 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5588 2.0648 1.2492 5 6 1.5589 2.0646 -1.2494 6 6 3.5355 1.1845 0.0006 7 7 3.9767 0.5637 -1.2509 8 6 5.3390 0.3479 -1.4820 9 6 6.2756 0.7258 -0.5182 10 6 7.6239 0.5190 -0.7310 11 6 8.0631 -0.0678 -1.9089 12 7 9.4196 -0.2746 -2.1218 13 6 7.1215 -0.4546 -2.8926 14 6 7.5540 -1.0527 -4.0944 15 1 8.4923 -1.5865 -4.1246 16 6 6.7677 -0.9544 -5.2471 17 7 5.7973 -0.0777 -5.3046 18 14 7.1025 -2.0742 -6.7043 19 1 6.9497 -3.4907 -6.2854 20 1 6.1379 -1.7723 -7.7923 21 1 8.4864 -1.8492 -7.1937 22 6 5.7506 -0.2423 -2.6597 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 2.0018 3.0607 1.2489 27 1 0.4722 2.1509 1.2491 28 1 1.8804 1.5239 2.1391 29 1 1.8805 1.5237 -2.1392 30 1 0.4723 2.1507 -1.2494 31 1 2.0019 3.0605 -1.2492 32 1 3.9786 2.1764 0.0902 33 1 3.8508 0.5684 0.8428 34 1 3.3240 0.3024 -1.9190 35 1 5.9426 1.1836 0.4015 36 1 8.3391 0.8152 0.0222 37 1 10.0627 -0.0090 -1.4460 38 1 9.7240 -0.6855 -2.9462 39 1 5.2518 -0.0099 -6.1039 40 1 5.0228 -0.5374 -3.4011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127530881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:24 Heat of formation + Delta-G solvation = -44.377838 kcal Electronic energy + Delta-G solvation = -20124.819890 eV Core-core repulsion = 17131.221983 eV Total energy + Delta-G solvation = -2993.597907 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33388 -39.45224 -36.76538 -35.31669 -34.29727 -32.43463 -31.27564 -28.95320 -28.42795 -27.71513 -26.58969 -25.51498 -22.98920 -21.44981 -20.86412 -18.90365 -18.08788 -17.33214 -17.20366 -16.83970 -16.52618 -16.22080 -15.88929 -15.38624 -14.74451 -14.57130 -14.23120 -14.10527 -13.85754 -13.55683 -13.48023 -13.20712 -13.06576 -12.85709 -12.83229 -12.67907 -12.40122 -12.24991 -12.07090 -11.77790 -11.49191 -11.27702 -11.15955 -10.91602 -10.49651 -9.37450 -9.11646 -8.47340 -7.26545 -5.98775 1.15041 1.41320 1.50853 1.54432 1.68230 2.28244 2.81351 2.93387 3.02046 3.75660 3.80066 3.94668 4.00494 4.04184 4.47283 4.51901 4.61827 4.65525 4.66774 4.72111 4.79919 4.86447 4.87008 4.91066 5.05327 5.17472 5.25164 5.33299 5.37460 5.45625 5.69346 5.91125 6.08675 6.19566 6.29369 6.35945 6.58996 6.98962 7.08717 7.16310 7.28217 7.49820 7.69240 8.52836 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020123 B = 0.005343 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.136121 B = 5239.315575 C = 6301.821147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.403 6.403 3 C 0.103 3.897 4 C -0.169 4.169 5 C -0.173 4.173 6 C 0.152 3.848 7 N -0.753 5.753 8 C 0.174 3.826 9 C -0.260 4.260 10 C -0.157 4.157 11 C 0.068 3.932 12 N -0.879 5.879 13 C 0.061 3.939 14 C -0.493 4.493 15 H 0.074 0.926 16 C 0.032 3.968 17 N -0.834 5.834 18 Si 0.975 3.025 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.227 4.227 23 H 0.088 0.912 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.388 0.612 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.390 0.610 38 H 0.390 0.610 39 H 0.278 0.722 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.803 3.538 8.016 12.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.323 6.323 3 C 0.064 3.936 4 C -0.227 4.227 5 C -0.230 4.230 6 C 0.027 3.973 7 N -0.387 5.387 8 C 0.073 3.927 9 C -0.284 4.284 10 C -0.181 4.181 11 C -0.034 4.034 12 N -0.423 5.423 13 C 0.056 3.944 14 C -0.524 4.524 15 H 0.092 0.908 16 C -0.180 4.180 17 N -0.461 5.461 18 Si 0.797 3.203 19 H -0.191 1.191 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.252 4.252 23 H 0.107 0.893 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.222 0.778 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.218 0.782 38 H 0.218 0.782 39 H 0.089 0.911 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.949 3.574 8.055 12.560 hybrid contribution 0.057 -0.397 -1.143 1.211 sum -8.892 3.177 6.911 11.702 Atomic orbital electron populations 1.22958 0.80261 1.03365 1.01088 1.88026 1.21102 1.27905 1.95217 1.21755 0.92033 0.83652 0.96206 1.22307 1.02891 1.01075 0.96389 1.22346 1.02413 1.00946 0.97320 1.21154 0.91800 0.97257 0.87061 1.44361 1.03276 1.70777 1.20296 1.17665 0.84095 0.96978 0.93960 1.19917 0.92296 1.15986 1.00208 1.20045 0.95339 1.06212 0.96504 1.18028 0.85290 1.03876 0.96250 1.41665 1.03103 1.74044 1.23482 1.17358 0.90962 0.93610 0.92508 1.19378 1.06429 1.32199 0.94387 0.90768 1.26580 0.93895 0.95229 1.02331 1.69968 1.17405 1.29245 1.29507 0.85364 0.79077 0.79013 0.76803 1.19111 1.19951 1.18393 1.20481 0.95720 1.11856 0.97133 0.89329 0.92176 0.93253 0.90077 0.90226 0.91601 0.93564 0.90331 0.90832 0.91601 0.93674 0.77801 0.87512 0.87038 0.78203 0.78242 0.91137 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.21 113.37 1.16 1.53 16 2 O -0.40 -11.46 10.29 -148.98 -1.53 -13.00 16 3 C 0.10 2.63 0.80 -10.79 -0.01 2.62 16 4 C -0.17 -3.13 8.25 71.98 0.59 -2.54 16 5 C -0.17 -4.18 8.02 71.98 0.58 -3.60 16 6 C 0.15 4.93 4.07 86.38 0.35 5.28 16 7 N -0.75 -30.89 5.37 -339.41 -1.82 -32.71 16 8 C 0.17 8.52 6.64 38.14 0.25 8.77 16 9 C -0.26 -12.01 9.31 22.55 0.21 -11.80 16 10 C -0.16 -7.23 9.86 22.35 0.22 -7.01 16 11 C 0.07 3.36 6.79 38.97 0.26 3.62 16 12 N -0.88 -36.30 8.98 -50.31 -0.45 -36.75 16 13 C 0.06 3.39 5.58 -21.18 -0.12 3.27 16 14 C -0.49 -27.03 8.50 23.35 0.20 -26.83 16 15 H 0.07 3.84 6.67 -2.91 -0.02 3.82 16 16 C 0.03 1.68 5.19 85.23 0.44 2.13 16 17 N -0.83 -45.70 10.88 21.82 0.24 -45.47 16 18 Si 0.98 40.06 29.59 68.60 2.03 42.09 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 22 C -0.23 -12.61 8.50 22.81 0.19 -12.41 16 23 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.06 0.93 6.42 -2.38 -0.02 0.92 16 25 H 0.05 0.89 6.42 -2.39 -0.02 0.87 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.18 6.54 -2.39 -0.02 1.16 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.34 6.58 -2.39 -0.02 1.33 16 30 H 0.08 1.51 6.54 -2.39 -0.02 1.50 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 2.04 7.94 -2.39 -0.02 2.02 16 33 H 0.05 1.53 7.94 -2.39 -0.02 1.51 16 34 H 0.39 16.08 6.99 -92.71 -0.65 15.43 16 35 H 0.11 4.35 6.69 -2.91 -0.02 4.33 16 36 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 37 H 0.39 13.28 8.83 -92.71 -0.82 12.46 16 38 H 0.39 15.91 7.04 -92.70 -0.65 15.26 16 39 H 0.28 14.05 8.30 -92.71 -0.77 13.28 16 40 H 0.10 5.67 6.14 -2.91 -0.02 5.65 16 Total: -1.00 -64.59 317.83 1.75 -62.83 By element: Atomic # 1 Polarization: 60.99 SS G_CDS: -1.04 Total: 59.95 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 4.34 Total: -36.95 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -2.04 Total: -114.92 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -1.53 Total: -13.00 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -64.59 1.75 -62.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127530881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.454 kcal (2) G-P(sol) polarization free energy of solvation -64.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds