Wall clock time and date at job start Mon Mar 30 2020 07:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42895 * 109.47298 * 2 1 4 4 C 1.42907 * 114.00227 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46695 * 29.99633 * 4 3 2 6 6 C 1.52999 * 109.46836 * 269.99761 * 4 3 2 7 7 C 1.52999 * 109.46913 * 149.99852 * 4 3 2 8 8 N 1.46495 * 109.47156 * 299.99330 * 7 4 3 9 9 C 1.39855 * 119.99736 * 179.97438 * 8 7 4 10 10 C 1.39604 * 119.83964 * 0.02562 * 9 8 7 11 11 C 1.38061 * 120.54596 * 179.72096 * 10 9 8 12 12 C 1.38733 * 120.22391 * 0.24884 * 11 10 9 13 13 N 1.38865 * 120.16615 * 179.97438 * 12 11 10 14 14 C 1.41559 * 119.67289 * 0.02562 * 12 11 10 15 15 C 1.41028 * 120.26782 * 180.02562 * 14 12 11 16 16 H 1.07999 * 119.99983 * 333.62405 * 15 14 12 17 17 C 1.39891 * 119.99737 * 153.62697 * 15 14 12 18 18 N 1.30900 * 120.00049 * 343.98011 * 17 15 14 19 19 Si 1.86802 * 119.99819 * 163.98785 * 17 15 14 20 20 H 1.48499 * 109.47464 * 59.99505 * 19 17 15 21 21 H 1.48498 * 109.46925 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47186 * 299.99421 * 19 17 15 23 23 C 1.38007 * 119.84165 * 180.24105 * 9 8 7 24 24 H 1.08997 * 109.47029 * 300.00183 * 1 2 3 25 25 H 1.09001 * 109.47263 * 60.00460 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47279 * 239.99768 * 2 1 3 28 28 H 1.09006 * 109.47402 * 120.00250 * 2 1 3 29 29 H 1.08995 * 109.47211 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.47522 * 300.00197 * 6 4 3 31 31 H 1.09006 * 109.46964 * 60.00085 * 6 4 3 32 32 H 1.09012 * 109.46525 * 179.97438 * 7 4 3 33 33 H 1.08991 * 109.47161 * 60.00262 * 7 4 3 34 34 H 0.96996 * 120.00510 * 0.02562 * 8 7 4 35 35 H 1.07996 * 119.72525 * 359.97438 * 10 9 8 36 36 H 1.07998 * 119.88491 * 180.27820 * 11 10 9 37 37 H 0.96999 * 119.99916 * 0.02562 * 13 12 11 38 38 H 0.97000 * 120.00078 * 180.02562 * 13 12 11 39 39 H 0.96999 * 119.99610 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.11262 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6016 -0.5147 6 6 3.9399 1.5002 1.4417 7 6 3.8403 2.7458 -0.7219 8 7 3.3531 2.7073 -2.1029 9 6 3.6062 3.7800 -2.9638 10 6 4.3240 4.8854 -2.5037 11 6 4.5872 5.9498 -3.3428 12 6 4.1350 5.9337 -4.6542 13 7 4.3999 7.0051 -5.4969 14 6 3.4013 4.8200 -5.1289 15 6 2.9361 4.7902 -6.4599 16 1 2.7457 5.7139 -6.9862 17 6 2.7212 3.5642 -7.0984 18 7 3.2343 2.4679 -6.6000 19 14 1.7021 3.4916 -8.6622 20 1 2.3380 4.3337 -9.7071 21 1 1.6252 2.0871 -9.1381 22 1 0.3333 3.9964 -8.3850 23 6 3.1414 3.7425 -4.2627 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 5.0264 1.5858 1.4413 30 1 3.5076 2.3586 1.9559 31 1 3.6481 0.5842 1.9556 32 1 4.9270 2.8320 -0.7219 33 1 3.4081 3.6041 -0.2077 34 1 2.8542 1.9383 -2.4200 35 1 4.6799 4.9064 -1.4843 36 1 5.1474 6.7976 -2.9770 37 1 4.9026 7.7672 -5.1691 38 1 4.0823 6.9915 -6.4134 39 1 3.0855 1.6179 -7.0430 40 1 2.5831 2.8874 -4.6139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127534755.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:21 Heat of formation + Delta-G solvation = -33.696001 kcal Electronic energy + Delta-G solvation = -19803.395281 eV Core-core repulsion = 16810.260574 eV Total energy + Delta-G solvation = -2993.134707 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.62350 -37.68926 -35.20913 -33.40578 -32.90633 -31.10532 -30.08731 -29.34905 -27.10949 -24.89818 -24.27416 -22.76873 -21.65817 -20.59280 -19.59364 -17.02400 -16.91705 -16.15915 -15.59220 -15.41964 -14.96140 -14.81736 -14.48369 -13.81167 -13.43317 -13.07841 -12.81611 -12.60492 -12.50720 -12.29183 -12.00163 -11.81994 -11.67010 -11.36785 -11.29101 -11.21646 -11.04361 -10.95549 -10.58259 -10.33404 -9.87463 -9.66588 -9.47089 -9.26881 -9.00118 -7.68947 -7.16284 -6.56733 -5.46329 -4.01766 2.96447 3.15030 3.18323 3.36058 3.53983 3.71644 4.07060 4.44403 4.86836 4.92723 5.03055 5.16857 5.25808 5.31902 5.33855 5.47961 5.51689 5.70174 5.78317 5.88431 5.92948 6.06052 6.09816 6.12854 6.26788 6.42200 6.68773 7.17584 7.20759 7.32713 7.37109 7.55200 7.76183 7.93906 8.06248 8.18154 8.51248 8.81826 8.96492 9.00610 9.05880 9.31239 9.39836 10.42473 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.005346 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.680638 B = 5235.953574 C = 6550.139132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.374 6.374 4 C 0.076 3.924 5 H 0.062 0.938 6 C -0.170 4.170 7 C 0.144 3.856 8 N -0.757 5.757 9 C 0.179 3.821 10 C -0.256 4.256 11 C -0.152 4.152 12 C 0.084 3.916 13 N -0.889 5.889 14 C 0.096 3.904 15 C -0.465 4.465 16 H 0.070 0.930 17 C 0.077 3.923 18 N -0.801 5.801 19 Si 0.901 3.099 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.267 1.267 23 C -0.200 4.200 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.388 0.612 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.374 0.626 38 H 0.388 0.612 39 H 0.274 0.726 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 -4.597 10.101 11.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.294 6.294 4 C 0.018 3.982 5 H 0.080 0.920 6 C -0.228 4.228 7 C 0.018 3.982 8 N -0.392 5.392 9 C 0.080 3.920 10 C -0.280 4.280 11 C -0.177 4.177 12 C -0.017 4.017 13 N -0.432 5.432 14 C 0.091 3.909 15 C -0.497 4.497 16 H 0.088 0.912 17 C -0.139 4.139 18 N -0.428 5.428 19 Si 0.727 3.273 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.192 1.192 23 C -0.224 4.224 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.221 0.779 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.198 0.802 38 H 0.216 0.784 39 H 0.085 0.915 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.046 -4.703 10.254 11.330 hybrid contribution -0.283 -0.414 -0.997 1.116 sum -1.328 -5.117 9.258 10.661 Atomic orbital electron populations 1.21729 0.93924 1.01888 1.03270 1.22474 0.95567 0.84356 0.99645 1.88013 1.20662 1.25732 1.94979 1.22366 0.81544 0.98801 0.95515 0.91994 1.22209 1.01511 1.02516 0.96603 1.21101 0.97749 0.95366 0.83957 1.44169 1.64744 1.21144 1.09171 1.17519 0.97130 0.87372 0.89933 1.19604 1.13376 0.96541 0.98487 1.19694 1.06298 0.98675 0.92988 1.17855 1.01932 0.91492 0.90437 1.41800 1.66764 1.20434 1.14193 1.16958 0.91122 0.89958 0.92898 1.19090 1.40537 0.92593 0.97436 0.91184 1.25735 0.94120 0.95400 0.98607 1.69877 1.34894 0.99524 1.38535 0.86497 0.81238 0.77708 0.81880 1.19390 1.20666 1.19174 1.20476 1.08980 1.02478 0.90500 0.92075 0.91546 0.91451 0.93424 0.93934 0.91428 0.91574 0.92567 0.92411 0.92880 0.77851 0.89775 0.89827 0.80155 0.78375 0.91487 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.21 16 2 C 0.06 0.66 6.47 37.16 0.24 0.90 16 3 O -0.37 -5.50 9.73 -35.23 -0.34 -5.84 16 4 C 0.08 1.02 2.81 -26.73 -0.08 0.95 16 5 H 0.06 0.80 7.79 -51.93 -0.40 0.40 16 6 C -0.17 -1.83 9.53 37.16 0.35 -1.47 16 7 C 0.14 2.38 4.60 -4.04 -0.02 2.36 16 8 N -0.76 -15.38 5.63 -58.64 -0.33 -15.71 16 9 C 0.18 4.33 6.64 -83.77 -0.56 3.78 16 10 C -0.26 -6.01 9.31 -39.14 -0.36 -6.38 16 11 C -0.15 -3.59 9.86 -39.46 -0.39 -3.98 16 12 C 0.08 2.08 6.79 -83.23 -0.56 1.52 16 13 N -0.89 -18.67 8.98 32.75 0.29 -18.37 16 14 C 0.10 2.61 5.57 -106.66 -0.59 2.01 16 15 C -0.47 -12.46 8.48 -37.91 -0.32 -12.78 16 16 H 0.07 1.78 6.71 -52.49 -0.35 1.43 16 17 C 0.08 1.98 5.16 -17.33 -0.09 1.89 16 18 N -0.80 -21.31 10.97 55.55 0.61 -20.71 16 19 Si 0.90 19.25 29.59 -169.99 -5.03 14.22 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 C -0.20 -5.35 8.49 -38.75 -0.33 -5.68 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.55 8.08 -51.93 -0.42 0.13 16 28 H 0.04 0.43 7.87 -51.93 -0.41 0.02 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 32 H 0.06 0.93 7.94 -51.92 -0.41 0.52 16 33 H 0.05 0.92 7.94 -51.93 -0.41 0.51 16 34 H 0.39 7.75 8.35 -40.82 -0.34 7.41 16 35 H 0.08 1.79 6.69 -52.49 -0.35 1.44 16 36 H 0.08 1.76 8.06 -52.49 -0.42 1.33 16 37 H 0.37 6.64 8.83 -40.82 -0.36 6.28 16 38 H 0.39 7.99 7.05 -40.82 -0.29 7.70 16 39 H 0.27 6.74 8.30 -40.82 -0.34 6.40 16 40 H 0.12 3.23 6.22 -52.49 -0.33 2.91 16 LS Contribution 328.62 15.07 4.95 4.95 Total: -1.00 -29.45 328.62 -8.33 -37.78 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: -6.16 Total: 21.77 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -2.33 Total: -18.09 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.57 Total: -54.79 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.34 Total: -5.84 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.45 -8.33 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127534755.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.086 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds