Wall clock time and date at job start Mon Mar 30 2020 07:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46905 * 109.47135 * 2 1 4 4 C 1.46894 * 110.99888 * 76.07647 * 3 2 1 5 5 C 1.50705 * 109.46710 * 199.66683 * 4 3 2 6 6 H 1.07998 * 120.00101 * 355.76422 * 5 4 3 7 7 C 1.37887 * 119.99806 * 175.76835 * 5 4 3 8 8 N 1.31509 * 119.99725 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99969 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47487 * 89.99898 * 9 7 5 11 11 H 1.48502 * 109.46960 * 210.00408 * 9 7 5 12 12 H 1.48502 * 109.46962 * 329.99767 * 9 7 5 13 13 C 1.39246 * 110.99748 * 200.02884 * 3 2 1 14 14 N 1.32304 * 119.73390 * 236.04076 * 13 3 2 15 15 C 1.32014 * 121.68218 * 180.02562 * 14 13 3 16 16 C 1.38013 * 120.95105 * 0.02695 * 15 14 13 17 17 C 1.38850 * 119.36970 * 359.97438 * 16 15 14 18 18 C 1.38705 * 118.46187 * 359.73482 * 17 16 15 19 19 O 1.36007 * 120.50029 * 180.26007 * 18 17 16 20 20 C 1.42897 * 116.99948 * 354.67800 * 19 18 17 21 21 C 1.53002 * 109.47068 * 85.36291 * 20 19 18 22 22 C 1.53001 * 109.47199 * 205.36288 * 20 19 18 23 23 H 1.09001 * 109.47150 * 184.37510 * 1 2 3 24 24 H 1.09001 * 109.46821 * 304.37059 * 1 2 3 25 25 H 1.08996 * 109.47508 * 64.37043 * 1 2 3 26 26 H 1.09006 * 109.47352 * 240.00298 * 2 1 3 27 27 H 1.09001 * 109.47398 * 119.99964 * 2 1 3 28 28 H 1.08998 * 109.47797 * 79.66723 * 4 3 2 29 29 H 1.09001 * 109.46821 * 319.65962 * 4 3 2 30 30 H 0.97003 * 119.99977 * 179.97438 * 8 7 5 31 31 H 1.07996 * 119.52627 * 180.02562 * 15 14 13 32 32 H 1.07996 * 120.31465 * 179.97438 * 16 15 14 33 33 H 1.08002 * 120.76799 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.47279 * 325.36443 * 20 19 18 35 35 H 1.08991 * 109.47362 * 300.00105 * 21 20 19 36 36 H 1.09005 * 109.47274 * 60.00105 * 21 20 19 37 37 H 1.09005 * 109.47139 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.46978 * 59.99485 * 22 20 19 39 39 H 1.08996 * 109.47658 * 180.02562 * 22 20 19 40 40 H 1.09005 * 109.47095 * 299.99866 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8840 1.9913 1.3311 5 6 1.9252 3.4926 1.2058 6 1 2.1089 3.9494 0.2445 7 6 1.7283 4.2829 2.3184 8 7 1.7647 5.5930 2.2091 9 14 1.4098 3.4928 3.9808 10 1 2.7018 3.2664 4.6770 11 1 0.5566 4.3905 4.8002 12 1 0.7177 2.1933 3.7868 13 6 3.3375 1.4483 -0.4452 14 7 4.2622 2.0063 0.3190 15 6 5.5227 2.0873 -0.0651 16 6 5.9256 1.5897 -1.2877 17 6 4.9892 0.9954 -2.1231 18 6 3.6732 0.9183 -1.6918 19 8 2.7230 0.3400 -2.4745 20 6 3.1216 -0.0669 -3.7850 21 6 3.7367 -1.4664 -3.7195 22 6 1.8999 -0.0894 -4.7057 23 1 -0.3633 -1.0247 0.0784 24 1 -0.3633 0.5802 0.8483 25 1 -0.3634 0.4445 -0.9265 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.7032 1.6573 1.9678 29 1 0.9342 1.6895 1.7727 30 1 1.6259 6.1490 2.9917 31 1 6.2490 2.5497 0.5868 32 1 6.9594 1.6618 -1.5917 33 1 5.2798 0.5982 -3.0845 34 1 3.8579 0.6356 -4.1754 35 1 4.6070 -1.4504 -3.0636 36 1 3.0004 -2.1690 -3.3291 37 1 4.0403 -1.7770 -4.7193 38 1 1.4616 0.9075 -4.7523 39 1 2.2037 -0.4003 -5.7053 40 1 1.1636 -0.7921 -4.3153 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127583641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:57 Heat of formation + Delta-G solvation = 16.312713 kcal Electronic energy + Delta-G solvation = -20881.479437 eV Core-core repulsion = 17890.513271 eV Total energy + Delta-G solvation = -2990.966167 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.52706 -38.25347 -36.63153 -33.21937 -32.38207 -31.62386 -30.25564 -28.99276 -27.41913 -26.79363 -23.79279 -22.61813 -22.01739 -21.09512 -19.96386 -18.00796 -16.81246 -16.49758 -16.26962 -15.37368 -14.68925 -14.39170 -14.23490 -14.13534 -13.66780 -13.55648 -13.18193 -12.78300 -12.43035 -12.32199 -12.21637 -12.06364 -12.00506 -11.67443 -11.55534 -11.38200 -10.92903 -10.87022 -10.64317 -10.60207 -9.94596 -9.76107 -9.45836 -9.19689 -8.82527 -8.51977 -8.36220 -7.00656 -5.87904 -3.80779 1.70623 1.77560 3.33960 3.39640 3.45297 3.46389 4.21642 4.45395 4.56194 4.70765 4.84306 4.96076 5.09413 5.20133 5.30763 5.41397 5.45294 5.52000 5.54441 5.60050 5.68810 5.76227 5.77433 5.82758 5.98700 6.01699 6.07482 6.17121 6.36633 6.45744 6.48451 6.68461 6.81110 6.88373 7.13347 7.46808 7.60340 7.87830 8.14701 8.68477 8.86006 9.20086 9.73159 11.26424 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.022174 B = 0.006623 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.420330 B = 4226.962719 C = 4891.856408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 N -0.457 5.457 4 C 0.162 3.838 5 C -0.477 4.477 6 H 0.073 0.927 7 C 0.067 3.933 8 N -0.907 5.907 9 Si 0.873 3.127 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.269 1.269 13 C 0.322 3.678 14 N -0.452 5.452 15 C 0.089 3.911 16 C -0.186 4.186 17 C -0.155 4.155 18 C 0.048 3.952 19 O -0.292 6.292 20 C 0.072 3.928 21 C -0.178 4.178 22 C -0.146 4.146 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.033 0.967 28 H 0.014 0.986 29 H 0.032 0.968 30 H 0.260 0.740 31 H 0.150 0.850 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.791 -14.719 -11.391 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 N -0.173 5.173 4 C 0.038 3.962 5 C -0.516 4.516 6 H 0.091 0.909 7 C -0.133 4.133 8 N -0.547 5.547 9 Si 0.701 3.299 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.194 1.194 13 C 0.086 3.914 14 N -0.165 5.165 15 C -0.068 4.068 16 C -0.207 4.207 17 C -0.181 4.181 18 C -0.002 4.002 19 O -0.205 6.205 20 C 0.016 3.984 21 C -0.236 4.236 22 C -0.204 4.204 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.051 0.949 28 H 0.031 0.969 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.168 0.832 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.931 -14.016 -10.726 18.082 hybrid contribution 0.840 -0.773 0.422 1.217 sum 4.770 -14.789 -10.305 18.646 Atomic orbital electron populations 1.21730 0.94646 1.00494 1.03116 1.22230 0.96634 0.87668 1.01014 1.59142 1.12359 1.15901 1.29930 1.20314 0.96004 0.96762 0.83145 1.20787 1.46424 0.87792 0.96562 0.90882 1.24789 0.95580 0.94647 0.98306 1.69894 1.51714 1.03412 1.29715 0.86907 0.78484 0.79445 0.85089 1.20326 1.21444 1.19385 1.19508 0.89840 0.93285 0.88753 1.67936 1.00718 1.15157 1.32728 1.22479 0.92440 0.97219 0.94692 1.21688 0.99891 1.02927 0.96218 1.21380 0.92177 1.03669 1.00903 1.19520 0.88672 0.99591 0.92404 1.86279 1.35494 1.73928 1.24813 1.22379 0.97779 0.95502 0.82785 1.22374 1.01671 0.97105 1.02405 1.21817 0.97263 1.03523 0.97753 0.92977 0.92107 0.91915 0.89518 0.94909 0.96858 0.95064 0.92980 0.83250 0.85621 0.85090 0.91329 0.92049 0.91537 0.91409 0.91459 0.91047 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 10.07 37.16 0.37 -1.96 16 2 C 0.05 0.93 5.34 -3.82 -0.02 0.91 16 3 N -0.46 -10.35 4.32 -174.37 -0.75 -11.11 16 4 C 0.16 4.16 3.30 -4.98 -0.02 4.15 16 5 C -0.48 -14.26 8.91 -34.43 -0.31 -14.57 16 6 H 0.07 2.45 8.06 -52.49 -0.42 2.03 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 8 N -0.91 -28.93 13.96 55.43 0.77 -28.15 16 9 Si 0.87 22.41 27.56 -169.99 -4.68 17.72 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.57 6.42 56.52 0.36 -6.21 16 13 C 0.32 6.99 6.15 -154.70 -0.95 6.04 16 14 N -0.45 -10.20 7.90 -12.29 -0.10 -10.30 16 15 C 0.09 1.62 11.17 -17.56 -0.20 1.42 16 16 C -0.19 -2.79 10.10 -39.44 -0.40 -3.19 16 17 C -0.15 -2.33 8.36 -39.18 -0.33 -2.66 16 18 C 0.05 0.87 6.22 -38.92 -0.24 0.62 16 19 O -0.29 -4.66 7.16 -19.76 -0.14 -4.80 16 20 C 0.07 0.83 2.85 -26.73 -0.08 0.76 16 21 C -0.18 -1.68 9.20 37.16 0.34 -1.33 16 22 C -0.15 -1.43 9.56 37.16 0.36 -1.08 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 1.09 6.69 -51.93 -0.35 0.74 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.09 1.48 5.23 -51.93 -0.27 1.21 16 27 H 0.03 0.59 7.99 -51.93 -0.42 0.18 16 28 H 0.01 0.36 6.89 -51.93 -0.36 0.00 16 29 H 0.03 0.79 5.23 -51.93 -0.27 0.52 16 30 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 31 H 0.15 2.34 8.06 -52.49 -0.42 1.92 16 32 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.13 1.55 5.60 -52.49 -0.29 1.25 16 34 H 0.07 0.76 6.32 -51.93 -0.33 0.43 16 35 H 0.06 0.61 6.99 -51.93 -0.36 0.25 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 318.65 15.07 4.80 4.80 Total: -1.00 -34.11 318.65 -7.71 -41.82 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.05 Total: -1.00 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.56 Total: -8.98 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.08 Total: -49.56 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.14 Total: -4.80 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.68 Total: 17.72 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.11 -7.71 -41.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127583641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.132 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds