Wall clock time and date at job start Mon Mar 30 2020 07:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46905 * 109.47135 * 2 1 4 4 C 1.46894 * 110.99888 * 76.07647 * 3 2 1 5 5 C 1.50705 * 109.46710 * 199.66683 * 4 3 2 6 6 H 1.07998 * 120.00101 * 355.76422 * 5 4 3 7 7 C 1.37887 * 119.99806 * 175.76835 * 5 4 3 8 8 N 1.31509 * 119.99725 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99969 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47487 * 89.99898 * 9 7 5 11 11 H 1.48502 * 109.46960 * 210.00408 * 9 7 5 12 12 H 1.48502 * 109.46962 * 329.99767 * 9 7 5 13 13 C 1.39246 * 110.99748 * 200.02884 * 3 2 1 14 14 N 1.32304 * 119.73390 * 236.04076 * 13 3 2 15 15 C 1.32014 * 121.68218 * 180.02562 * 14 13 3 16 16 C 1.38013 * 120.95105 * 0.02695 * 15 14 13 17 17 C 1.38850 * 119.36970 * 359.97438 * 16 15 14 18 18 C 1.38705 * 118.46187 * 359.73482 * 17 16 15 19 19 O 1.36007 * 120.50029 * 180.26007 * 18 17 16 20 20 C 1.42897 * 116.99948 * 354.67800 * 19 18 17 21 21 C 1.53002 * 109.47068 * 85.36291 * 20 19 18 22 22 C 1.53001 * 109.47199 * 205.36288 * 20 19 18 23 23 H 1.09001 * 109.47150 * 184.37510 * 1 2 3 24 24 H 1.09001 * 109.46821 * 304.37059 * 1 2 3 25 25 H 1.08996 * 109.47508 * 64.37043 * 1 2 3 26 26 H 1.09006 * 109.47352 * 240.00298 * 2 1 3 27 27 H 1.09001 * 109.47398 * 119.99964 * 2 1 3 28 28 H 1.08998 * 109.47797 * 79.66723 * 4 3 2 29 29 H 1.09001 * 109.46821 * 319.65962 * 4 3 2 30 30 H 0.97003 * 119.99977 * 179.97438 * 8 7 5 31 31 H 1.07996 * 119.52627 * 180.02562 * 15 14 13 32 32 H 1.07996 * 120.31465 * 179.97438 * 16 15 14 33 33 H 1.08002 * 120.76799 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.47279 * 325.36443 * 20 19 18 35 35 H 1.08991 * 109.47362 * 300.00105 * 21 20 19 36 36 H 1.09005 * 109.47274 * 60.00105 * 21 20 19 37 37 H 1.09005 * 109.47139 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.46978 * 59.99485 * 22 20 19 39 39 H 1.08996 * 109.47658 * 180.02562 * 22 20 19 40 40 H 1.09005 * 109.47095 * 299.99866 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8840 1.9913 1.3311 5 6 1.9252 3.4926 1.2058 6 1 2.1089 3.9494 0.2445 7 6 1.7283 4.2829 2.3184 8 7 1.7647 5.5930 2.2091 9 14 1.4098 3.4928 3.9808 10 1 2.7018 3.2664 4.6770 11 1 0.5566 4.3905 4.8002 12 1 0.7177 2.1933 3.7868 13 6 3.3375 1.4483 -0.4452 14 7 4.2622 2.0063 0.3190 15 6 5.5227 2.0873 -0.0651 16 6 5.9256 1.5897 -1.2877 17 6 4.9892 0.9954 -2.1231 18 6 3.6732 0.9183 -1.6918 19 8 2.7230 0.3400 -2.4745 20 6 3.1216 -0.0669 -3.7850 21 6 3.7367 -1.4664 -3.7195 22 6 1.8999 -0.0894 -4.7057 23 1 -0.3633 -1.0247 0.0784 24 1 -0.3633 0.5802 0.8483 25 1 -0.3634 0.4445 -0.9265 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.7032 1.6573 1.9678 29 1 0.9342 1.6895 1.7727 30 1 1.6259 6.1490 2.9917 31 1 6.2490 2.5497 0.5868 32 1 6.9594 1.6618 -1.5917 33 1 5.2798 0.5982 -3.0845 34 1 3.8579 0.6356 -4.1754 35 1 4.6070 -1.4504 -3.0636 36 1 3.0004 -2.1690 -3.3291 37 1 4.0403 -1.7770 -4.7193 38 1 1.4616 0.9075 -4.7523 39 1 2.2037 -0.4003 -5.7053 40 1 1.1636 -0.7921 -4.3153 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127583641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:56 Heat of formation + Delta-G solvation = -6.439439 kcal Electronic energy + Delta-G solvation = -20882.466045 eV Core-core repulsion = 17890.513271 eV Total energy + Delta-G solvation = -2991.952774 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.86395 -39.49588 -38.16479 -34.73350 -34.07352 -32.98053 -31.67120 -30.74559 -28.59602 -28.06025 -25.29331 -24.02239 -23.67654 -22.29593 -21.41580 -19.22732 -18.93099 -17.88573 -17.85353 -16.48117 -16.30379 -15.99277 -15.49580 -15.38835 -15.21593 -14.96062 -14.62517 -14.34524 -13.79382 -13.60796 -13.34999 -13.30410 -13.05077 -13.01550 -12.95024 -12.69340 -12.54462 -12.45679 -11.87943 -11.79624 -11.78269 -11.51957 -11.38168 -10.90147 -10.66604 -10.25779 -9.95064 -8.49392 -8.21448 -6.19967 0.34563 0.46294 1.33591 1.36882 1.45976 2.22848 2.38109 2.78208 3.02402 3.13882 3.75376 3.84730 3.93048 4.02673 4.08847 4.19208 4.23287 4.34563 4.37465 4.53605 4.65292 4.70136 4.75368 4.85528 4.88139 4.93534 4.96635 5.03394 5.07540 5.17694 5.19687 5.28494 5.33317 5.34253 5.58163 5.65788 5.90868 6.18558 6.51348 6.65493 6.78107 7.34762 7.40304 8.96830 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.022174 B = 0.006623 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.420330 B = 4226.962719 C = 4891.856408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.050 3.950 3 N -0.477 5.477 4 C 0.180 3.820 5 C -0.476 4.476 6 H 0.018 0.982 7 C 0.005 3.995 8 N -0.956 5.956 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.248 1.248 13 C 0.276 3.724 14 N -0.504 5.504 15 C 0.060 3.940 16 C -0.161 4.161 17 C -0.148 4.148 18 C 0.052 3.948 19 O -0.309 6.309 20 C 0.060 3.940 21 C -0.171 4.171 22 C -0.144 4.144 23 H 0.088 0.912 24 H 0.040 0.960 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.032 0.968 28 H 0.003 0.997 29 H 0.035 0.965 30 H 0.264 0.736 31 H 0.163 0.837 32 H 0.172 0.828 33 H 0.172 0.828 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.102 0.898 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.768 -17.398 -12.583 22.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.075 4.075 3 N -0.194 5.194 4 C 0.054 3.946 5 C -0.514 4.514 6 H 0.036 0.964 7 C -0.191 4.191 8 N -0.598 5.598 9 Si 0.770 3.230 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.172 1.172 13 C 0.042 3.958 14 N -0.219 5.219 15 C -0.097 4.097 16 C -0.182 4.182 17 C -0.174 4.174 18 C 0.001 3.999 19 O -0.222 6.222 20 C 0.005 3.995 21 C -0.229 4.229 22 C -0.201 4.201 23 H 0.107 0.893 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.118 0.882 27 H 0.050 0.950 28 H 0.021 0.979 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.180 0.820 32 H 0.189 0.811 33 H 0.189 0.811 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.068 0.932 39 H 0.121 0.879 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.914 -16.725 -11.953 21.136 hybrid contribution 0.657 0.054 0.566 0.869 sum 5.571 -16.671 -11.387 20.943 Atomic orbital electron populations 1.21707 0.93325 1.02388 1.01918 1.22357 0.97659 0.85919 1.01596 1.59185 1.14189 1.18142 1.27904 1.19904 0.95421 0.93934 0.85318 1.20875 1.45877 0.90354 0.94335 0.96395 1.25736 0.95307 0.95100 1.02910 1.70061 1.53304 1.05233 1.31204 0.85735 0.78788 0.79274 0.79191 1.19690 1.20506 1.17194 1.19683 0.89477 0.95942 0.90732 1.67742 1.02654 1.16425 1.35037 1.22889 0.91473 0.98543 0.96784 1.22133 1.01988 0.99789 0.94255 1.21846 0.90790 1.02532 1.02208 1.19466 0.90063 0.98897 0.91451 1.86246 1.35817 1.73610 1.26570 1.22793 0.98945 0.96913 0.80860 1.22333 1.01144 0.95359 1.04031 1.21854 0.96642 1.02620 0.98984 0.89316 0.94051 0.92418 0.88173 0.94951 0.97881 0.94685 0.92745 0.81951 0.81085 0.81117 0.90599 0.92487 0.91819 0.88555 0.93178 0.87925 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 10.07 71.98 0.72 -3.64 16 2 C 0.05 1.83 5.34 86.30 0.46 2.29 16 3 N -0.48 -22.29 4.32 -705.58 -3.05 -25.33 16 4 C 0.18 9.53 3.30 85.56 0.28 9.81 16 5 C -0.48 -29.91 8.91 25.60 0.23 -29.68 16 6 H 0.02 1.28 8.06 -2.91 -0.02 1.26 16 7 C 0.00 0.31 5.47 84.66 0.46 0.77 16 8 N -0.96 -63.43 13.96 21.45 0.30 -63.13 16 9 Si 0.95 47.19 27.56 68.60 1.89 49.08 16 10 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.25 -11.44 6.42 99.48 0.64 -10.80 16 13 C 0.28 12.28 6.15 133.11 0.82 13.10 16 14 N -0.50 -23.55 7.90 -192.78 -1.52 -25.08 16 15 C 0.06 2.17 11.17 84.61 0.95 3.12 16 16 C -0.16 -4.41 10.10 22.36 0.23 -4.18 16 17 C -0.15 -4.05 8.36 22.53 0.19 -3.86 16 18 C 0.05 1.81 6.22 22.70 0.14 1.95 16 19 O -0.31 -9.51 7.16 -93.63 -0.67 -10.18 16 20 C 0.06 1.23 2.85 30.60 0.09 1.32 16 21 C -0.17 -2.60 9.20 71.98 0.66 -1.94 16 22 C -0.14 -2.48 9.56 71.98 0.69 -1.79 16 23 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.04 1.47 6.69 -2.39 -0.02 1.45 16 25 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.10 3.35 5.23 -2.38 -0.01 3.34 16 27 H 0.03 1.16 7.99 -2.39 -0.02 1.14 16 28 H 0.00 0.19 6.89 -2.39 -0.02 0.17 16 29 H 0.04 1.80 5.23 -2.39 -0.01 1.79 16 30 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 31 H 0.16 5.13 8.06 -2.91 -0.02 5.10 16 32 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.17 3.25 5.60 -2.91 -0.02 3.23 16 34 H 0.08 1.43 6.32 -2.39 -0.02 1.41 16 35 H 0.06 0.93 6.99 -2.39 -0.02 0.91 16 36 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -79.68 318.65 3.82 -75.87 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.95 Total: 11.50 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 5.92 Total: -12.73 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -4.27 Total: -113.54 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.67 Total: -10.18 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.89 Total: 49.08 kcal Total: -79.68 3.82 -75.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127583641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.428 kcal (2) G-P(sol) polarization free energy of solvation -79.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds