Wall clock time and date at job start Mon Mar 30 2020 07:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47094 * 2 1 4 4 C 1.36006 * 117.00301 * 179.97438 * 3 2 1 5 5 C 1.38702 * 120.49463 * 359.97438 * 4 3 2 6 6 C 1.38859 * 118.46048 * 179.97438 * 5 4 3 7 7 C 1.38013 * 119.36647 * 0.02562 * 6 5 4 8 8 N 1.32014 * 120.95379 * 359.97438 * 7 6 5 9 9 C 1.32305 * 121.67970 * 0.02562 * 8 7 6 10 10 N 1.39247 * 119.73297 * 179.97438 * 9 8 7 11 11 C 1.46906 * 110.99792 * 93.40504 * 10 9 8 12 12 C 1.50700 * 109.46988 * 169.73780 * 11 10 9 13 13 H 1.07999 * 120.00119 * 1.48254 * 12 11 10 14 14 C 1.37883 * 119.99952 * 181.48425 * 12 11 10 15 15 N 1.31516 * 119.99710 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46774 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47105 * 120.00128 * 16 14 12 19 19 H 1.48497 * 109.46625 * 240.00195 * 16 14 12 20 20 C 1.46897 * 111.00432 * 329.44977 * 10 9 8 21 21 C 1.53004 * 109.46801 * 312.64957 * 20 10 9 22 22 C 1.53005 * 109.47028 * 72.64618 * 20 10 9 23 23 H 1.09001 * 109.47443 * 60.00592 * 1 2 3 24 24 H 1.09002 * 109.46872 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47455 * 300.00138 * 1 2 3 26 26 H 1.09002 * 109.47455 * 239.99862 * 2 1 3 27 27 H 1.09010 * 109.47177 * 119.99459 * 2 1 3 28 28 H 1.07998 * 120.77501 * 359.95732 * 5 4 3 29 29 H 1.07998 * 120.31968 * 179.97438 * 6 5 4 30 30 H 1.07997 * 119.51832 * 179.72102 * 7 6 5 31 31 H 1.09002 * 109.47131 * 289.73335 * 11 10 9 32 32 H 1.08999 * 109.47459 * 49.73359 * 11 10 9 33 33 H 0.96999 * 119.99810 * 180.02562 * 15 14 12 34 34 H 1.08990 * 109.47491 * 192.65202 * 20 10 9 35 35 H 1.09005 * 109.46766 * 66.60492 * 21 20 10 36 36 H 1.09001 * 109.46845 * 186.59820 * 21 20 10 37 37 H 1.08989 * 109.47337 * 306.60054 * 21 20 10 38 38 H 1.08998 * 109.46702 * 66.23769 * 22 20 10 39 39 H 1.08997 * 109.46986 * 186.23077 * 22 20 10 40 40 H 1.08997 * 109.47360 * 306.23217 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5256 0.0005 5 6 4.2091 0.4330 0.0016 6 6 5.5783 0.6638 0.0016 7 6 6.0459 1.9623 0.0010 8 7 5.2107 2.9847 0.0001 9 6 3.8991 2.8104 0.0000 10 7 3.0553 3.9181 -0.0005 11 6 2.6716 4.2869 -1.3697 12 6 1.5721 5.3165 -1.3232 13 1 1.2125 5.6799 -0.3719 14 6 1.0252 5.7945 -2.4952 15 7 1.4627 5.3515 -3.6537 16 14 -0.3382 7.0701 -2.4376 17 1 -0.6486 7.3992 -1.0231 18 1 0.1025 8.2980 -3.1469 19 1 -1.5527 6.5265 -3.0968 20 6 3.6757 5.0529 0.6961 21 6 4.2548 4.5775 2.0302 22 6 4.7969 5.6315 -0.1694 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 3.8185 -0.5739 0.0027 29 1 6.2709 -0.1649 0.0028 30 1 7.1103 2.1446 0.0056 31 1 3.5353 4.7011 -1.8901 32 1 2.3186 3.4019 -1.8991 33 1 1.0783 5.6880 -4.4782 34 1 2.9247 5.8213 0.8793 35 1 5.0854 3.8967 1.8436 36 1 4.6102 5.4369 2.5988 37 1 3.4817 4.0604 2.5983 38 1 4.3701 6.0699 -1.0714 39 1 5.3290 6.4000 0.3913 40 1 5.4904 4.8369 -0.4446 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127586082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:04 Heat of formation + Delta-G solvation = 20.001667 kcal Electronic energy + Delta-G solvation = -21035.731261 eV Core-core repulsion = 18044.925059 eV Total energy + Delta-G solvation = -2990.806202 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.54414 -38.18160 -36.80972 -32.76500 -31.99207 -31.44101 -30.62370 -28.93940 -26.65784 -25.94025 -24.08804 -22.62588 -22.02277 -21.72880 -19.54951 -17.78819 -16.60333 -16.20031 -15.82271 -15.77945 -14.90835 -14.28100 -14.15882 -13.97092 -13.64117 -13.29515 -12.87377 -12.63627 -12.45512 -12.23808 -12.12569 -11.98687 -11.38115 -11.17352 -11.04372 -10.95873 -10.79467 -10.67270 -10.57795 -10.45012 -10.03331 -9.88431 -9.43414 -9.14694 -8.63955 -8.43673 -8.09947 -7.10806 -5.99185 -3.99506 1.54094 1.66711 3.33957 3.41046 3.46486 3.49968 4.13528 4.41954 4.59602 4.96527 4.99154 5.07510 5.18655 5.31042 5.36643 5.38795 5.52190 5.58653 5.76403 5.88762 5.94768 5.97544 6.16870 6.22833 6.31170 6.37630 6.43619 6.55488 6.69904 6.73045 6.76618 6.98197 7.26654 7.44583 7.48770 7.64320 7.89143 8.02873 8.18686 8.50577 8.61876 9.06249 9.63236 11.11985 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.016033 B = 0.007757 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.987757 B = 3608.904770 C = 4626.722605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.280 6.280 4 C 0.089 3.911 5 C -0.166 4.166 6 C -0.166 4.166 7 C 0.063 3.937 8 N -0.474 5.474 9 C 0.307 3.693 10 N -0.469 5.469 11 C 0.201 3.799 12 C -0.501 4.501 13 H 0.064 0.936 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.097 3.903 21 C -0.151 4.151 22 C -0.188 4.188 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.148 0.852 31 H 0.012 0.988 32 H 0.031 0.969 33 H 0.260 0.740 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.036 0.964 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.177 -10.639 7.965 14.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.191 6.191 4 C 0.038 3.962 5 C -0.193 4.193 6 C -0.187 4.187 7 C -0.093 4.093 8 N -0.189 5.189 9 C 0.075 3.925 10 N -0.190 5.190 11 C 0.079 3.921 12 C -0.540 4.540 13 H 0.083 0.917 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.011 4.011 21 C -0.209 4.209 22 C -0.247 4.247 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.150 0.850 29 H 0.145 0.855 30 H 0.166 0.834 31 H 0.029 0.971 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.825 -9.732 8.014 13.499 hybrid contribution -0.297 -0.300 -0.523 0.672 sum 4.528 -10.032 7.491 13.314 Atomic orbital electron populations 1.21726 0.92761 1.02070 1.04165 1.22749 0.96237 0.83007 1.00399 1.86388 1.17507 1.27402 1.87821 1.19663 0.83723 0.93486 0.99304 1.21493 0.94135 0.98100 1.05578 1.21685 0.94925 0.98283 1.03781 1.22436 0.99345 0.88357 0.99198 1.68185 1.02966 1.34090 1.13644 1.19789 0.87001 0.90571 0.95167 1.60288 1.34144 1.03420 1.21104 1.19870 0.95779 0.96504 0.79951 1.21117 1.18318 1.21792 0.92737 0.91744 1.24950 0.97197 0.97027 0.95314 1.69977 1.42777 1.43753 0.97259 0.86446 0.81768 0.81121 0.78133 1.19620 1.21134 1.21084 1.21408 0.95052 0.92180 0.92423 1.22071 1.00904 1.00971 0.96964 1.22714 0.99683 1.01706 1.00587 0.91045 0.90995 0.91452 0.92631 0.92791 0.84990 0.85501 0.83419 0.97057 0.95138 0.93031 0.89777 0.91825 0.93216 0.93363 0.91905 0.94467 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 37.16 0.38 -1.46 16 2 C 0.05 0.71 5.48 37.16 0.20 0.91 16 3 O -0.28 -5.37 9.89 -19.76 -0.20 -5.57 16 4 C 0.09 1.68 6.69 -38.92 -0.26 1.42 16 5 C -0.17 -2.49 9.14 -39.18 -0.36 -2.85 16 6 C -0.17 -2.25 10.10 -39.43 -0.40 -2.65 16 7 C 0.06 0.95 11.17 -17.56 -0.20 0.76 16 8 N -0.47 -8.93 4.68 -12.29 -0.06 -8.98 16 9 C 0.31 6.41 4.64 -154.71 -0.72 5.69 16 10 N -0.47 -10.89 4.34 -166.80 -0.72 -11.62 16 11 C 0.20 5.43 4.23 -4.97 -0.02 5.41 16 12 C -0.50 -14.26 8.65 -34.44 -0.30 -14.55 16 13 H 0.06 1.83 7.07 -52.49 -0.37 1.45 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 16 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 C 0.10 2.05 2.79 -67.71 -0.19 1.86 16 21 C -0.15 -2.72 8.61 37.16 0.32 -2.40 16 22 C -0.19 -3.88 8.15 37.16 0.30 -3.58 16 23 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.69 7.70 -51.93 -0.40 0.29 16 27 H 0.05 0.62 7.70 -51.92 -0.40 0.22 16 28 H 0.13 1.57 6.44 -52.49 -0.34 1.23 16 29 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.01 0.33 5.95 -51.93 -0.31 0.03 16 32 H 0.03 0.90 8.02 -51.93 -0.42 0.49 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.08 1.87 7.12 -51.93 -0.37 1.50 16 35 H 0.06 1.14 5.75 -51.93 -0.30 0.84 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.87 8.14 -51.94 -0.42 0.44 16 38 H 0.06 1.46 6.57 -51.93 -0.34 1.12 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.84 5.24 -51.93 -0.27 1.57 16 LS Contribution 319.28 15.07 4.81 4.81 Total: -1.00 -31.62 319.28 -7.81 -39.43 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.03 Total: 1.13 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -1.33 Total: -9.91 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.05 Total: -46.78 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.20 Total: -5.57 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.62 -7.81 -39.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127586082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.433 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds