Wall clock time and date at job start Mon Mar 30 2020 06:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36016 * 117.00112 * 2 1 4 4 C 1.38702 * 120.49550 * 359.97438 * 3 2 1 5 5 C 1.38855 * 118.45751 * 180.02562 * 4 3 2 6 6 C 1.38011 * 119.36785 * 0.02562 * 5 4 3 7 7 N 1.32013 * 120.95497 * 359.97438 * 6 5 4 8 8 C 1.32299 * 121.67750 * 0.02562 * 7 6 5 9 9 N 1.39252 * 119.72905 * 179.72193 * 8 7 6 10 10 C 1.46899 * 110.99984 * 259.34243 * 9 8 7 11 11 C 1.50696 * 109.47324 * 200.82602 * 10 9 8 12 12 H 1.08006 * 119.99974 * 5.75367 * 11 10 9 13 13 C 1.37878 * 120.00317 * 185.75423 * 11 10 9 14 14 N 1.31512 * 119.99693 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99924 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47110 * 90.00383 * 15 13 11 17 17 H 1.48504 * 109.46919 * 209.99922 * 15 13 11 18 18 H 1.48493 * 109.47658 * 330.00129 * 15 13 11 19 19 C 1.46894 * 111.00221 * 23.29627 * 9 8 7 20 20 C 1.53005 * 109.47231 * 162.20039 * 19 9 8 21 21 C 1.52998 * 109.47187 * 178.46156 * 20 19 9 22 22 C 1.52991 * 109.47278 * 298.46442 * 20 19 9 23 23 H 1.09000 * 109.47054 * 59.99781 * 1 2 3 24 24 H 1.09000 * 109.47611 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47429 * 299.99907 * 1 2 3 26 26 H 1.08003 * 120.77006 * 0.02562 * 4 3 2 27 27 H 1.08002 * 120.31379 * 179.97438 * 5 4 3 28 28 H 1.08003 * 119.51737 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.47102 * 320.82713 * 10 9 8 30 30 H 1.09002 * 109.47290 * 80.82615 * 10 9 8 31 31 H 0.97006 * 119.99642 * 179.97438 * 14 13 11 32 32 H 1.08998 * 109.47283 * 282.20468 * 19 9 8 33 33 H 1.09003 * 109.47161 * 42.20317 * 19 9 8 34 34 H 1.09005 * 109.46490 * 58.46385 * 20 19 9 35 35 H 1.08998 * 109.47172 * 59.99998 * 21 20 19 36 36 H 1.08999 * 109.47054 * 180.02562 * 21 20 19 37 37 H 1.09002 * 109.47155 * 300.00286 * 21 20 19 38 38 H 1.09001 * 109.47240 * 180.45579 * 22 20 19 39 39 H 1.09000 * 109.47081 * 300.45910 * 22 20 19 40 40 H 1.09007 * 109.47002 * 60.45911 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.3011 2.3816 -0.0005 5 6 1.9751 3.5956 -0.0011 6 6 3.3552 3.6036 -0.0016 7 7 4.0407 2.4754 -0.0011 8 6 3.4393 1.2970 -0.0006 9 7 4.2025 0.1322 -0.0059 10 6 4.2730 -0.4447 -1.3550 11 6 4.6373 -1.9038 -1.2590 12 1 4.7091 -2.3800 -0.2922 13 6 4.8791 -2.6310 -2.4052 14 7 4.7922 -2.0510 -3.5823 15 14 5.3314 -4.4395 -2.2860 16 1 4.0957 -5.2622 -2.3224 17 1 6.2050 -4.8076 -3.4291 18 1 6.0530 -4.6864 -1.0119 19 6 5.5469 0.3812 0.5311 20 6 6.1932 -0.9487 0.9246 21 6 7.6079 -0.6929 1.4482 22 6 5.3580 -1.6179 2.0179 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.2216 2.3490 -0.0005 27 1 1.4246 4.5248 -0.0019 28 1 3.8819 4.5464 -0.0016 29 1 3.3044 -0.3436 -1.8445 30 1 5.0304 0.0814 -1.9360 31 1 4.9626 -2.5626 -4.3887 32 1 6.1565 0.8708 -0.2282 33 1 5.4744 1.0236 1.4087 34 1 6.2408 -1.6014 0.0529 35 1 7.5603 -0.0401 2.3198 36 1 8.0685 -1.6403 1.7281 37 1 8.2029 -0.2161 0.6692 38 1 5.8229 -2.5614 2.3040 39 1 5.3036 -0.9616 2.8865 40 1 4.3525 -1.8075 1.6421 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127587831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:38 Heat of formation + Delta-G solvation = 7.513703 kcal Electronic energy + Delta-G solvation = -20963.081121 eV Core-core repulsion = 17971.733401 eV Total energy + Delta-G solvation = -2991.347720 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.36317 -37.85725 -36.97527 -33.74896 -32.63030 -31.27901 -29.45114 -27.40326 -26.82360 -26.37390 -24.93100 -22.75440 -22.35645 -20.86719 -18.96677 -17.69573 -16.74542 -16.54171 -16.02787 -15.40706 -14.78589 -14.39927 -14.15611 -13.96660 -13.68129 -13.38861 -12.95902 -12.73398 -12.30424 -12.16303 -12.09085 -11.71380 -11.36863 -11.11316 -11.08133 -11.02609 -10.71423 -10.55899 -10.19676 -10.14119 -9.97493 -9.65052 -9.32163 -9.21520 -8.99051 -8.39187 -8.23442 -7.10484 -6.00498 -3.98472 1.55636 1.66893 3.33949 3.40187 3.43717 3.62499 4.13698 4.39515 4.57907 4.98999 5.02480 5.21337 5.33450 5.35887 5.40420 5.59258 5.64052 5.70882 5.74899 5.80893 6.05959 6.22183 6.26338 6.34194 6.38631 6.49915 6.53298 6.62083 6.74504 6.78613 6.90861 7.20774 7.26308 7.30343 7.50560 7.63416 7.88230 7.99243 8.16626 8.49938 8.57934 9.06055 9.61434 11.10345 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.016639 B = 0.007633 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.374966 B = 3667.595668 C = 4439.329905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.280 6.280 3 C 0.083 3.917 4 C -0.164 4.164 5 C -0.171 4.171 6 C 0.072 3.928 7 N -0.491 5.491 8 C 0.306 3.694 9 N -0.468 5.468 10 C 0.206 3.794 11 C -0.501 4.501 12 H 0.080 0.920 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.894 3.106 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.271 1.271 19 C 0.091 3.909 20 C -0.115 4.115 21 C -0.141 4.141 22 C -0.130 4.130 23 H 0.049 0.951 24 H 0.099 0.901 25 H 0.047 0.953 26 H 0.133 0.867 27 H 0.128 0.872 28 H 0.149 0.851 29 H 0.027 0.973 30 H 0.008 0.992 31 H 0.261 0.739 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.119 0.881 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.036 0.964 39 H 0.032 0.968 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.480 7.427 8.071 12.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.190 6.190 3 C 0.033 3.967 4 C -0.190 4.190 5 C -0.192 4.192 6 C -0.084 4.084 7 N -0.206 5.206 8 C 0.072 3.928 9 N -0.187 5.187 10 C 0.083 3.917 11 C -0.540 4.540 12 H 0.098 0.902 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.722 3.278 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.196 1.196 19 C -0.037 4.037 20 C -0.133 4.133 21 C -0.199 4.199 22 C -0.188 4.188 23 H 0.068 0.932 24 H 0.117 0.883 25 H 0.066 0.934 26 H 0.151 0.849 27 H 0.146 0.854 28 H 0.166 0.834 29 H 0.045 0.955 30 H 0.026 0.974 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.137 0.863 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.681 6.814 8.162 11.617 hybrid contribution -0.696 -0.137 -0.555 0.901 sum -5.377 6.677 7.607 11.461 Atomic orbital electron populations 1.23032 0.79816 1.03843 1.00324 1.86405 1.19752 1.24969 1.87887 1.19647 0.92062 0.85282 0.99749 1.21484 1.00161 0.92058 1.05335 1.21678 0.95557 0.97671 1.04312 1.22333 0.91324 0.95966 0.98818 1.67979 1.40213 0.97887 1.14546 1.19786 0.88406 0.89227 0.95362 1.59799 1.14061 1.18070 1.26754 1.19856 0.96982 0.95037 0.79822 1.21300 1.45611 0.93698 0.93374 0.90245 1.24983 0.95924 0.98428 0.95294 1.69972 1.49916 1.36338 0.97488 0.86552 0.78375 0.85190 0.77699 1.20718 1.21417 1.19566 1.21807 0.87869 0.96021 0.97983 1.21609 0.92633 0.98029 1.01015 1.21799 0.97567 1.00484 1.00056 1.21662 1.01591 0.98329 0.97175 0.93223 0.88271 0.93406 0.84892 0.85446 0.83404 0.95486 0.97418 0.92981 0.94370 0.92863 0.86349 0.93997 0.93321 0.93292 0.94475 0.94850 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.83 101.05 0.99 1.33 16 2 O -0.28 -5.35 9.93 -19.79 -0.20 -5.55 16 3 C 0.08 1.58 6.37 -38.92 -0.25 1.34 16 4 C -0.16 -2.47 9.14 -39.18 -0.36 -2.83 16 5 C -0.17 -2.37 10.10 -39.44 -0.40 -2.77 16 6 C 0.07 1.13 11.17 -17.56 -0.20 0.93 16 7 N -0.49 -9.64 9.00 -12.29 -0.11 -9.75 16 8 C 0.31 6.48 5.76 -154.71 -0.89 5.59 16 9 N -0.47 -10.67 3.50 -174.38 -0.61 -11.28 16 10 C 0.21 5.43 4.60 -4.98 -0.02 5.41 16 11 C -0.50 -13.62 6.90 -34.44 -0.24 -13.86 16 12 H 0.08 2.10 4.86 -52.48 -0.26 1.85 16 13 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 14 N -0.90 -26.44 13.29 55.43 0.74 -25.71 16 15 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 C 0.09 1.91 3.64 -3.82 -0.01 1.90 16 20 C -0.11 -2.28 2.40 -90.62 -0.22 -2.50 16 21 C -0.14 -2.36 9.19 37.16 0.34 -2.01 16 22 C -0.13 -2.44 8.44 37.15 0.31 -2.13 16 23 H 0.05 0.59 7.70 -51.93 -0.40 0.19 16 24 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.05 0.52 7.70 -51.93 -0.40 0.12 16 26 H 0.13 1.58 6.44 -52.48 -0.34 1.24 16 27 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.15 1.82 8.06 -52.48 -0.42 1.40 16 29 H 0.03 0.78 7.41 -51.93 -0.38 0.39 16 30 H 0.01 0.23 7.74 -51.93 -0.40 -0.17 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.04 0.85 7.76 -51.93 -0.40 0.45 16 33 H 0.05 1.07 7.70 -51.93 -0.40 0.67 16 34 H 0.12 2.75 4.90 -51.93 -0.25 2.49 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.50 6.84 -51.93 -0.35 1.15 16 LS Contribution 321.88 15.07 4.85 4.85 Total: -1.00 -30.82 321.88 -7.49 -38.31 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.11 Total: 0.93 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -1.03 Total: -8.17 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.02 Total: -46.74 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.20 Total: -5.55 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.82 -7.49 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127587831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.823 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds