Wall clock time and date at job start Mon Mar 30 2020 07:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47003 * 2 1 4 4 O 1.42895 * 109.46890 * 180.02562 * 3 2 1 5 5 C 1.36011 * 117.00120 * 179.97438 * 4 3 2 6 6 C 1.38707 * 120.49491 * 359.72715 * 5 4 3 7 7 C 1.38861 * 118.45502 * 179.73763 * 6 5 4 8 8 C 1.38011 * 119.37075 * 0.53354 * 7 6 5 9 9 N 1.32014 * 120.95344 * 359.72130 * 8 7 6 10 10 C 1.32301 * 121.67714 * 0.02562 * 9 8 7 11 11 N 1.39251 * 119.73075 * 179.97438 * 10 9 8 12 12 C 1.46908 * 110.99532 * 250.16735 * 11 10 9 13 13 C 1.46895 * 111.00436 * 14.11970 * 11 10 9 14 14 H 1.09008 * 109.46539 * 50.58502 * 13 11 10 15 15 C 1.52995 * 109.47368 * 170.58003 * 13 11 10 16 16 C 1.50696 * 109.47422 * 290.58641 * 13 11 10 17 17 H 1.08004 * 119.99888 * 359.97438 * 16 13 11 18 18 C 1.37881 * 120.00350 * 179.97438 * 16 13 11 19 19 N 1.31511 * 119.99715 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 120.00216 * 179.97438 * 18 16 13 21 21 H 1.48509 * 109.47076 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47432 * 120.00010 * 20 18 16 23 23 H 1.48505 * 109.47079 * 240.00389 * 20 18 16 24 24 H 1.09004 * 109.47048 * 300.00712 * 1 2 3 25 25 H 1.08999 * 109.46888 * 60.00187 * 1 2 3 26 26 H 1.08998 * 109.47188 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46898 * 239.99786 * 2 1 3 28 28 H 1.08999 * 109.46888 * 119.99813 * 2 1 3 29 29 H 1.08999 * 109.47146 * 299.99656 * 3 2 1 30 30 H 1.08999 * 109.47329 * 59.99721 * 3 2 1 31 31 H 1.07994 * 120.77261 * 359.97438 * 6 5 4 32 32 H 1.07997 * 120.31202 * 180.23349 * 7 6 5 33 33 H 1.07996 * 119.52135 * 179.75179 * 8 7 6 34 34 H 1.08998 * 109.46706 * 60.00321 * 12 11 10 35 35 H 1.09001 * 109.46990 * 179.97438 * 12 11 10 36 36 H 1.08989 * 109.47263 * 299.99886 * 12 11 10 37 37 H 1.09000 * 109.46733 * 66.10758 * 15 13 11 38 38 H 1.09007 * 109.47271 * 186.10160 * 15 13 11 39 39 H 1.09000 * 109.47176 * 306.10353 * 15 13 11 40 40 H 0.97001 * 119.99940 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0865 2.6543 -0.0012 6 6 3.3412 3.8241 -0.0070 7 6 4.0152 5.0381 -0.0018 8 6 5.3953 5.0461 -0.0024 9 7 6.0808 3.9179 -0.0023 10 6 5.4794 2.7395 -0.0021 11 7 6.2425 1.5747 -0.0026 12 6 6.1411 0.8795 -1.2928 13 6 7.6436 1.8630 0.3314 14 1 7.6844 2.4620 1.2412 15 6 8.3962 0.5493 0.5516 16 6 8.2834 2.6248 -0.8006 17 1 7.7068 2.8699 -1.6804 18 6 9.6047 3.0090 -0.7132 19 7 10.3068 2.7101 0.3579 20 14 10.3978 3.9527 -2.1166 21 1 9.4021 4.1601 -3.1987 22 1 10.8731 5.2695 -1.6215 23 1 11.5489 3.1779 -2.6459 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 2.2617 3.7915 -0.0114 32 1 3.4647 5.9673 -0.0022 33 1 5.9221 5.9889 -0.0024 34 1 6.5011 1.5335 -2.0870 35 1 6.7469 -0.0263 -1.2660 36 1 5.1008 0.6158 -1.4827 37 1 8.4489 -0.0010 -0.3878 38 1 9.4052 0.7633 0.9044 39 1 7.8709 -0.0502 1.2950 40 1 11.2363 2.9807 0.4195 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127592720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:03 Heat of formation + Delta-G solvation = 13.160589 kcal Electronic energy + Delta-G solvation = -20668.545877 eV Core-core repulsion = 17677.443024 eV Total energy + Delta-G solvation = -2991.102853 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.29972 -38.03553 -36.50855 -33.99159 -32.59675 -31.20000 -29.80635 -28.17928 -26.66683 -25.24209 -24.90234 -22.99181 -21.90014 -21.22766 -19.39163 -17.75226 -16.52742 -16.33736 -16.17821 -15.95592 -14.66677 -14.30022 -14.25464 -14.14300 -13.47653 -13.43550 -13.03973 -12.67905 -12.33218 -12.21251 -12.08590 -11.71736 -11.48222 -11.29525 -11.04446 -10.95765 -10.80725 -10.63320 -10.57009 -10.23007 -10.05869 -9.80536 -9.38298 -9.07623 -8.54878 -8.22810 -8.16451 -7.00292 -5.81971 -3.84330 1.73399 1.83642 3.37378 3.38896 3.45062 3.49239 4.35143 4.56355 4.68212 4.78939 4.80882 5.08727 5.13523 5.23850 5.28642 5.31363 5.45816 5.50235 5.53835 5.76488 5.79818 5.84554 5.94863 6.07470 6.24111 6.37400 6.47671 6.52666 6.71955 6.89965 7.00424 7.07396 7.21948 7.46448 7.69768 7.82505 7.99353 8.20240 8.41207 8.50984 8.87517 9.14420 9.75682 11.22729 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.025313 B = 0.005814 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.902038 B = 4815.152361 C = 5465.558779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.056 3.944 4 O -0.295 6.295 5 C 0.061 3.939 6 C -0.164 4.164 7 C -0.178 4.178 8 C 0.075 3.925 9 N -0.429 5.429 10 C 0.311 3.689 11 N -0.479 5.479 12 C 0.044 3.956 13 C 0.212 3.788 14 H 0.045 0.955 15 C -0.130 4.130 16 C -0.492 4.492 17 H 0.054 0.946 18 C 0.063 3.937 19 N -0.896 5.896 20 Si 0.887 3.113 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.288 1.288 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.148 0.852 34 H 0.039 0.961 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.029 0.971 38 H 0.085 0.915 39 H 0.014 0.986 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.134 -1.285 -1.038 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.020 4.020 4 O -0.207 6.207 5 C 0.011 3.989 6 C -0.191 4.191 7 C -0.199 4.199 8 C -0.083 4.083 9 N -0.142 5.142 10 C 0.077 3.923 11 N -0.197 5.197 12 C -0.103 4.103 13 C 0.107 3.893 14 H 0.063 0.937 15 C -0.189 4.189 16 C -0.532 4.532 17 H 0.072 0.928 18 C -0.137 4.137 19 N -0.536 5.536 20 Si 0.716 3.284 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.214 1.214 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.165 0.835 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.103 0.897 39 H 0.033 0.967 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.113 -1.814 -0.612 16.226 hybrid contribution -0.313 1.413 -1.250 1.912 sum -16.426 -0.402 -1.861 16.536 Atomic orbital electron populations 1.21687 0.94677 1.02253 1.01950 1.21449 0.95527 0.95158 1.03873 1.22786 0.80064 0.98417 1.00689 1.86218 1.19608 1.26056 1.88846 1.19690 0.92078 0.84794 1.02366 1.21364 0.99678 0.92153 1.05882 1.21736 0.95794 0.97473 1.04909 1.22610 0.90895 0.96854 0.97912 1.68507 1.38033 0.96935 1.10697 1.19673 0.86838 0.90088 0.95739 1.59963 1.14822 1.16522 1.28401 1.22184 1.00253 0.98671 0.89163 1.19313 0.79209 0.93504 0.97232 0.93674 1.21823 1.02377 0.96590 0.98078 1.21394 0.95384 1.33750 1.02672 0.92797 1.24780 0.97268 0.96109 0.95539 1.69893 1.08750 1.47534 1.27466 0.86622 0.79111 0.79866 0.82792 1.20246 1.21261 1.21436 0.92537 0.92575 0.91918 0.90843 0.90709 0.92752 0.92619 0.85395 0.85765 0.83460 0.94267 0.90989 0.92847 0.95217 0.89664 0.96680 0.93355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -1.22 6.30 -26.73 -0.17 -1.39 16 3 C 0.06 0.67 4.76 37.16 0.18 0.85 16 4 O -0.29 -4.95 8.54 -19.78 -0.17 -5.12 16 5 C 0.06 1.13 6.47 -38.92 -0.25 0.87 16 6 C -0.16 -2.54 9.14 -39.18 -0.36 -2.89 16 7 C -0.18 -2.72 10.10 -39.43 -0.40 -3.12 16 8 C 0.07 1.39 11.17 -17.56 -0.20 1.19 16 9 N -0.43 -9.83 7.45 -12.29 -0.09 -9.92 16 10 C 0.31 6.88 5.84 -154.70 -0.90 5.98 16 11 N -0.48 -11.09 4.54 -174.58 -0.79 -11.88 16 12 C 0.04 0.91 8.68 60.07 0.52 1.43 16 13 C 0.21 5.56 1.98 -68.87 -0.14 5.42 16 14 H 0.05 1.33 7.85 -51.92 -0.41 0.93 16 15 C -0.13 -3.25 8.63 37.15 0.32 -2.93 16 16 C -0.49 -13.62 6.13 -34.44 -0.21 -13.83 16 17 H 0.05 1.53 6.07 -52.48 -0.32 1.22 16 18 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 19 N -0.90 -26.09 11.39 55.43 0.63 -25.46 16 20 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.59 7.68 -51.93 -0.40 0.19 16 30 H 0.06 0.61 7.71 -51.93 -0.40 0.21 16 31 H 0.13 1.55 6.44 -52.49 -0.34 1.21 16 32 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 33 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 34 H 0.04 0.87 6.31 -51.93 -0.33 0.54 16 35 H 0.07 1.45 6.41 -51.93 -0.33 1.12 16 36 H 0.05 1.00 6.71 -51.94 -0.35 0.65 16 37 H 0.03 0.70 6.75 -51.93 -0.35 0.35 16 38 H 0.08 2.30 6.26 -51.93 -0.33 1.98 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 318.67 15.07 4.80 4.80 Total: -1.00 -31.15 318.67 -8.04 -39.19 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -6.07 Total: -1.22 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -1.33 Total: -7.46 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.25 Total: -47.26 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.17 Total: -5.12 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.15 -8.04 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127592720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.351 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds