Wall clock time and date at job start Mon Mar 30 2020 07:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 116.99946 * 2 1 4 4 C 1.38814 * 120.01728 * 0.02562 * 3 2 1 5 5 C 1.38180 * 120.09341 * 179.97438 * 4 3 2 6 6 C 1.38164 * 120.12747 * 359.79788 * 5 4 3 7 7 C 1.38927 * 120.03441 * 0.45736 * 6 5 4 8 8 N 1.39667 * 120.04834 * 179.79319 * 7 6 5 9 9 C 1.46893 * 111.00033 * 295.76975 * 8 7 6 10 10 C 1.46901 * 110.99682 * 59.72472 * 8 7 6 11 11 C 1.50701 * 109.46921 * 170.00023 * 10 8 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 8 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 C 1.38579 * 120.01923 * 180.02562 * 3 2 1 20 20 C 1.50691 * 120.06083 * 0.03776 * 19 3 2 21 21 H 1.08999 * 109.47013 * 194.97797 * 20 19 3 22 22 C 1.53004 * 109.46979 * 74.98227 * 20 19 3 23 23 N 1.46901 * 109.47617 * 314.97882 * 20 19 3 24 24 H 1.08997 * 109.47132 * 59.99858 * 1 2 3 25 25 H 1.08998 * 109.47118 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47240 * 300.00132 * 1 2 3 27 27 H 1.08000 * 119.95552 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.93848 * 180.02562 * 5 4 3 29 29 H 1.07999 * 119.97989 * 180.23308 * 6 5 4 30 30 H 1.08999 * 109.47439 * 183.95324 * 9 8 7 31 31 H 1.08997 * 109.47257 * 303.95451 * 9 8 7 32 32 H 1.09006 * 109.46808 * 63.95007 * 9 8 7 33 33 H 1.09002 * 109.47401 * 50.00051 * 10 8 7 34 34 H 1.09001 * 109.46874 * 290.00063 * 10 8 7 35 35 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.47310 * 59.99897 * 22 20 19 37 37 H 1.09005 * 109.46933 * 179.97438 * 22 20 19 38 38 H 1.08998 * 109.47233 * 299.99220 * 22 20 19 39 39 H 1.00895 * 111.00311 * 176.04492 * 23 20 19 40 40 H 1.00902 * 111.00002 * 300.00645 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 0.0005 5 6 1.9159 3.6073 0.0011 6 6 3.2954 3.6845 0.0053 7 6 4.0569 2.5226 -0.0006 8 7 5.4514 2.6003 -0.0007 9 6 5.9434 3.2309 -1.2328 10 6 5.9389 3.3142 1.1870 11 6 7.4357 3.1675 1.2822 12 1 7.9713 2.6009 0.5349 13 6 8.1215 3.7574 2.3227 14 7 7.4693 4.4477 3.2325 15 14 9.9769 3.5760 2.4403 16 1 10.4675 2.7583 1.3018 17 1 10.6094 4.9188 2.3934 18 1 10.3289 2.9072 3.7186 19 6 3.4298 1.2839 -0.0005 20 6 4.2523 0.0212 -0.0020 21 1 5.2825 0.2584 0.2634 22 6 4.2168 -0.6089 -1.3958 23 7 3.6998 -0.9243 0.9771 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2117 2.3182 0.0005 28 1 1.3255 4.5116 0.0019 29 1 3.7819 4.6487 0.0095 30 1 7.0333 3.2155 -1.2387 31 1 5.5676 2.6826 -2.0966 32 1 5.5943 4.2626 -1.2774 33 1 5.4751 2.8939 2.0794 34 1 5.6817 4.3705 1.1070 35 1 7.9517 4.8624 3.9647 36 1 4.6269 0.0926 -2.1223 37 1 4.8122 -1.5220 -1.3969 38 1 3.1866 -0.8462 -1.6612 39 1 4.1943 -1.8034 0.9498 40 1 3.7121 -0.5312 1.9063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129555601.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:21 Heat of formation + Delta-G solvation = -0.053133 kcal Electronic energy + Delta-G solvation = -20732.286131 eV Core-core repulsion = 17740.610288 eV Total energy + Delta-G solvation = -2991.675843 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.09229 -37.96662 -35.42859 -35.11259 -32.55406 -30.00483 -28.93827 -28.18771 -27.22095 -27.00509 -24.85725 -22.94251 -22.32269 -20.20890 -19.77909 -17.29154 -16.53491 -15.98968 -15.66860 -15.43295 -14.89574 -14.70041 -14.43532 -14.17986 -13.75343 -13.57248 -13.30495 -12.66543 -12.41509 -12.11669 -11.99311 -11.66723 -11.47734 -11.42350 -11.27253 -11.11797 -10.98901 -10.68740 -10.65566 -10.52442 -10.34097 -10.00232 -9.30082 -8.49870 -8.19888 -8.09778 -7.68987 -7.40566 -6.07113 -4.09232 1.71574 1.88168 3.28136 3.35794 3.40164 3.61265 4.12352 4.39238 4.93877 4.99535 5.07408 5.24485 5.28470 5.28967 5.33037 5.54334 5.60396 5.71549 5.80674 5.83636 5.99312 6.06800 6.18141 6.21961 6.36916 6.49410 6.56115 6.65171 6.73933 6.84422 6.96344 7.01042 7.28652 7.33167 7.63447 7.79435 7.84040 7.93401 8.01873 8.11953 8.56571 8.97987 9.55106 11.03629 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.024896 B = 0.005623 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.425730 B = 4978.188355 C = 5389.075984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.279 6.279 3 C 0.152 3.848 4 C -0.235 4.235 5 C -0.075 4.075 6 C -0.190 4.190 7 C 0.154 3.846 8 N -0.511 5.511 9 C 0.045 3.955 10 C 0.200 3.800 11 C -0.509 4.509 12 H 0.065 0.935 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.898 3.102 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.284 1.284 19 C -0.104 4.104 20 C 0.140 3.860 21 H 0.070 0.930 22 C -0.133 4.133 23 N -0.835 5.835 24 H 0.045 0.955 25 H 0.092 0.908 26 H 0.048 0.952 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.018 0.982 33 H 0.030 0.970 34 H -0.003 1.003 35 H 0.261 0.739 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.332 0.668 40 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.728 -6.658 -7.401 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.191 6.191 3 C 0.105 3.895 4 C -0.253 4.253 5 C -0.094 4.094 6 C -0.210 4.210 7 C 0.059 3.941 8 N -0.233 5.233 9 C -0.102 4.102 10 C 0.077 3.923 11 C -0.548 4.548 12 H 0.083 0.917 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.106 4.106 20 C 0.029 3.971 21 H 0.088 0.912 22 C -0.191 4.191 23 N -0.364 5.364 24 H 0.064 0.936 25 H 0.111 0.889 26 H 0.066 0.934 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.015 0.985 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.144 0.856 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.061 -7.169 -7.652 15.981 hybrid contribution 1.263 1.235 0.724 1.909 sum -10.798 -5.934 -6.927 14.135 Atomic orbital electron populations 1.22965 0.80558 1.03048 1.00483 1.86358 1.19003 1.25703 1.88033 1.18654 0.91430 0.84060 0.95318 1.21102 0.99333 0.92567 1.12339 1.20710 0.94320 0.96617 0.97798 1.21651 0.94223 0.99184 1.05972 1.18739 0.90500 0.90981 0.93890 1.59807 1.03340 1.55166 1.04960 1.22213 1.01775 0.95663 0.90526 1.19800 0.95720 0.91187 0.85633 1.21165 0.91376 1.32241 1.09977 0.91668 1.24983 0.98708 0.95228 0.95588 1.69974 1.35703 1.34391 1.13518 0.86441 0.85175 0.77764 0.78043 1.19614 1.21076 1.20999 1.18993 0.89945 0.94490 1.07174 1.19935 0.96396 0.88270 0.92456 0.91238 1.21712 1.01673 0.99607 0.96079 1.58740 1.61797 1.06360 1.09504 0.93609 0.88915 0.93359 0.86255 0.86624 0.86262 0.90249 0.93469 0.96302 0.95215 0.98502 0.92907 0.92720 0.93338 0.92287 0.85588 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.28 -4.15 8.10 -19.42 -0.16 -4.31 16 3 C 0.15 2.51 6.44 -39.24 -0.25 2.25 16 4 C -0.23 -3.55 9.04 -39.39 -0.36 -3.90 16 5 C -0.08 -1.20 10.03 -39.63 -0.40 -1.59 16 6 C -0.19 -3.53 8.70 -39.35 -0.34 -3.87 16 7 C 0.15 3.06 4.64 -83.81 -0.39 2.67 16 8 N -0.51 -11.06 3.46 -180.35 -0.62 -11.69 16 9 C 0.05 0.88 9.09 60.06 0.55 1.42 16 10 C 0.20 5.18 4.30 -4.97 -0.02 5.16 16 11 C -0.51 -14.03 8.52 -34.44 -0.29 -14.32 16 12 H 0.07 1.77 7.10 -52.49 -0.37 1.40 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 15 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C -0.10 -1.89 4.94 -104.28 -0.51 -2.41 16 20 C 0.14 2.38 3.29 -68.87 -0.23 2.15 16 21 H 0.07 1.36 7.05 -51.93 -0.37 1.00 16 22 C -0.13 -1.99 9.36 37.16 0.35 -1.64 16 23 N -0.83 -12.62 7.71 -5.66 -0.04 -12.66 16 24 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 27 H 0.12 1.47 6.29 -52.49 -0.33 1.14 16 28 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.12 2.26 7.15 -52.49 -0.38 1.89 16 30 H 0.08 1.60 6.86 -51.93 -0.36 1.24 16 31 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 32 H 0.02 0.36 7.49 -51.93 -0.39 -0.03 16 33 H 0.03 0.85 8.06 -51.93 -0.42 0.43 16 34 H 0.00 -0.08 7.46 -51.93 -0.39 -0.46 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.89 7.46 -51.93 -0.39 0.50 16 39 H 0.33 4.35 8.99 -39.29 -0.35 4.00 16 40 H 0.34 5.29 9.03 -39.29 -0.35 4.93 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -30.12 324.21 -7.36 -37.48 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.13 Total: 6.98 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -1.01 Total: -11.33 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.07 Total: -50.06 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.16 Total: -4.31 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.12 -7.36 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129555601.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.431 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds