Wall clock time and date at job start Mon Mar 30 2020 07:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 116.99946 * 2 1 4 4 C 1.38814 * 120.01728 * 0.02562 * 3 2 1 5 5 C 1.38180 * 120.09341 * 179.97438 * 4 3 2 6 6 C 1.38164 * 120.12747 * 359.79788 * 5 4 3 7 7 C 1.38927 * 120.03441 * 0.45736 * 6 5 4 8 8 N 1.39667 * 120.04834 * 179.79319 * 7 6 5 9 9 C 1.46893 * 111.00033 * 295.76975 * 8 7 6 10 10 C 1.46901 * 110.99682 * 59.72472 * 8 7 6 11 11 C 1.50701 * 109.46921 * 170.00023 * 10 8 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 8 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 C 1.38579 * 120.01923 * 180.02562 * 3 2 1 20 20 C 1.50691 * 120.06083 * 0.03776 * 19 3 2 21 21 H 1.08999 * 109.47013 * 194.97797 * 20 19 3 22 22 C 1.53004 * 109.46979 * 74.98227 * 20 19 3 23 23 N 1.46901 * 109.47617 * 314.97882 * 20 19 3 24 24 H 1.08997 * 109.47132 * 59.99858 * 1 2 3 25 25 H 1.08998 * 109.47118 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47240 * 300.00132 * 1 2 3 27 27 H 1.08000 * 119.95552 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.93848 * 180.02562 * 5 4 3 29 29 H 1.07999 * 119.97989 * 180.23308 * 6 5 4 30 30 H 1.08999 * 109.47439 * 183.95324 * 9 8 7 31 31 H 1.08997 * 109.47257 * 303.95451 * 9 8 7 32 32 H 1.09006 * 109.46808 * 63.95007 * 9 8 7 33 33 H 1.09002 * 109.47401 * 50.00051 * 10 8 7 34 34 H 1.09001 * 109.46874 * 290.00063 * 10 8 7 35 35 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.47310 * 59.99897 * 22 20 19 37 37 H 1.09005 * 109.46933 * 179.97438 * 22 20 19 38 38 H 1.08998 * 109.47233 * 299.99220 * 22 20 19 39 39 H 1.00895 * 111.00311 * 176.04492 * 23 20 19 40 40 H 1.00902 * 111.00002 * 300.00645 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2902 2.3753 0.0005 5 6 1.9159 3.6073 0.0011 6 6 3.2954 3.6845 0.0053 7 6 4.0569 2.5226 -0.0006 8 7 5.4514 2.6003 -0.0007 9 6 5.9434 3.2309 -1.2328 10 6 5.9389 3.3142 1.1870 11 6 7.4357 3.1675 1.2822 12 1 7.9713 2.6009 0.5349 13 6 8.1215 3.7574 2.3227 14 7 7.4693 4.4477 3.2325 15 14 9.9769 3.5760 2.4403 16 1 10.4675 2.7583 1.3018 17 1 10.6094 4.9188 2.3934 18 1 10.3289 2.9072 3.7186 19 6 3.4298 1.2839 -0.0005 20 6 4.2523 0.0212 -0.0020 21 1 5.2825 0.2584 0.2634 22 6 4.2168 -0.6089 -1.3958 23 7 3.6998 -0.9243 0.9771 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2117 2.3182 0.0005 28 1 1.3255 4.5116 0.0019 29 1 3.7819 4.6487 0.0095 30 1 7.0333 3.2155 -1.2387 31 1 5.5676 2.6826 -2.0966 32 1 5.5943 4.2626 -1.2774 33 1 5.4751 2.8939 2.0794 34 1 5.6817 4.3705 1.1070 35 1 7.9517 4.8624 3.9647 36 1 4.6269 0.0926 -2.1223 37 1 4.8122 -1.5220 -1.3969 38 1 3.1866 -0.8462 -1.6612 39 1 4.1943 -1.8034 0.9498 40 1 3.7121 -0.5312 1.9063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129555601.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:21 Heat of formation + Delta-G solvation = -20.075305 kcal Electronic energy + Delta-G solvation = -20733.154358 eV Core-core repulsion = 17740.610288 eV Total energy + Delta-G solvation = -2992.544070 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.40223 -39.32025 -36.89079 -36.44263 -34.63976 -31.31033 -30.39485 -29.40403 -29.12696 -28.00778 -26.58198 -24.23707 -24.12096 -21.64415 -21.13782 -18.74745 -18.37915 -17.40544 -16.94647 -16.78409 -16.45323 -16.15295 -15.87944 -15.47309 -15.32919 -15.07052 -14.66530 -14.16633 -14.04313 -13.57328 -13.39856 -13.06877 -12.91442 -12.86482 -12.67218 -12.59933 -12.44723 -12.40462 -12.27998 -12.06352 -11.70906 -11.55948 -11.35641 -10.65647 -9.56728 -9.46722 -9.09158 -8.96371 -8.22880 -6.33820 0.36991 0.54708 1.40178 1.40724 1.54460 2.37246 2.51531 2.79533 3.09919 3.36154 3.72942 3.87297 4.10932 4.24839 4.32559 4.40611 4.52580 4.52745 4.57378 4.59415 4.65734 4.71665 4.85413 4.92050 4.99290 5.07227 5.10721 5.16978 5.24141 5.33365 5.44605 5.51028 5.60240 5.69949 5.76828 6.05653 6.16053 6.36771 6.66419 6.74298 6.81034 6.81456 7.36039 8.88534 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.024896 B = 0.005623 C = 0.005194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.425730 B = 4978.188355 C = 5389.075984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.291 6.291 3 C 0.154 3.846 4 C -0.225 4.225 5 C -0.071 4.071 6 C -0.211 4.211 7 C 0.122 3.878 8 N -0.510 5.510 9 C 0.049 3.951 10 C 0.222 3.778 11 C -0.523 4.523 12 H 0.066 0.934 13 C 0.003 3.997 14 N -0.934 5.934 15 Si 0.971 3.029 16 H -0.261 1.261 17 H -0.278 1.278 18 H -0.279 1.279 19 C -0.119 4.119 20 C 0.143 3.857 21 H 0.035 0.965 22 C -0.123 4.123 23 N -0.826 5.826 24 H 0.061 0.939 25 H 0.114 0.886 26 H 0.057 0.943 27 H 0.156 0.844 28 H 0.146 0.854 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.016 0.984 33 H -0.007 1.007 34 H -0.031 1.031 35 H 0.265 0.735 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.344 0.656 40 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.915 -7.813 -8.272 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.203 6.203 3 C 0.106 3.894 4 C -0.243 4.243 5 C -0.089 4.089 6 C -0.231 4.231 7 C 0.027 3.973 8 N -0.231 5.231 9 C -0.098 4.098 10 C 0.098 3.902 11 C -0.561 4.561 12 H 0.085 0.915 13 C -0.195 4.195 14 N -0.575 5.575 15 Si 0.795 3.205 16 H -0.185 1.185 17 H -0.204 1.204 18 H -0.205 1.205 19 C -0.121 4.121 20 C 0.032 3.968 21 H 0.053 0.947 22 C -0.181 4.181 23 N -0.355 5.355 24 H 0.080 0.920 25 H 0.132 0.868 26 H 0.075 0.925 27 H 0.173 0.827 28 H 0.164 0.836 29 H 0.121 0.879 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.035 0.965 33 H 0.011 0.989 34 H -0.014 1.014 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.157 0.843 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.268 -8.349 -8.547 17.855 hybrid contribution 1.453 1.535 0.984 2.331 sum -11.815 -6.814 -7.563 15.596 Atomic orbital electron populations 1.23301 0.78035 1.05019 1.01629 1.86335 1.21565 1.24813 1.87569 1.18703 0.90952 0.85290 0.94417 1.21484 1.01075 0.91539 1.10220 1.21018 0.93179 0.98401 0.96318 1.21629 0.95747 0.98034 1.07716 1.18848 0.89464 0.92347 0.96622 1.59654 1.05234 1.54209 1.04033 1.22200 1.01092 0.95909 0.90567 1.19331 0.95027 0.89526 0.86344 1.21456 0.92268 1.32201 1.10158 0.91542 1.25914 1.03894 0.94633 0.95033 1.70106 1.37846 1.35301 1.14212 0.85311 0.78834 0.78031 0.78306 1.18529 1.20351 1.20496 1.19116 0.91263 0.94101 1.07587 1.19821 0.94426 0.88628 0.93915 0.94658 1.21617 1.02050 0.99916 0.94489 1.58737 1.61514 1.06444 1.08854 0.92017 0.86752 0.92479 0.82664 0.83608 0.87923 0.91292 0.90954 0.96535 0.98871 1.01366 0.92650 0.93244 0.91789 0.92000 0.84286 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.29 -7.89 8.10 -92.39 -0.75 -8.64 16 3 C 0.15 4.80 6.44 22.49 0.14 4.94 16 4 C -0.22 -6.17 9.04 22.39 0.20 -5.97 16 5 C -0.07 -2.12 10.03 22.24 0.22 -1.90 16 6 C -0.21 -8.00 8.70 22.42 0.20 -7.81 16 7 C 0.12 4.98 4.64 38.20 0.18 5.16 16 8 N -0.51 -23.08 3.46 -724.50 -2.51 -25.59 16 9 C 0.05 1.96 9.09 127.69 1.16 3.12 16 10 C 0.22 12.20 4.30 85.56 0.37 12.57 16 11 C -0.52 -29.77 8.52 25.60 0.22 -29.55 16 12 H 0.07 3.69 7.10 -2.91 -0.02 3.67 16 13 C 0.00 0.19 5.46 84.66 0.46 0.66 16 14 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 15 Si 0.97 44.31 29.54 68.60 2.03 46.34 16 16 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 C -0.12 -4.31 4.94 -19.64 -0.10 -4.41 16 20 C 0.14 4.87 3.29 44.17 0.15 5.01 16 21 H 0.04 1.44 7.05 -2.39 -0.02 1.42 16 22 C -0.12 -3.55 9.36 71.98 0.67 -2.87 16 23 N -0.83 -24.44 7.71 -171.81 -1.32 -25.76 16 24 H 0.06 0.90 7.66 -2.39 -0.02 0.88 16 25 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 0.91 7.66 -2.38 -0.02 0.89 16 27 H 0.16 3.11 6.29 -2.91 -0.02 3.09 16 28 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 29 H 0.10 4.13 7.15 -2.91 -0.02 4.11 16 30 H 0.07 2.85 6.86 -2.39 -0.02 2.84 16 31 H 0.07 2.49 8.12 -2.39 -0.02 2.47 16 32 H 0.02 0.65 7.49 -2.38 -0.02 0.63 16 33 H -0.01 -0.42 8.06 -2.39 -0.02 -0.44 16 34 H -0.03 -1.85 7.46 -2.39 -0.02 -1.87 16 35 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.06 1.74 7.46 -2.39 -0.02 1.72 16 39 H 0.34 8.67 8.99 -89.70 -0.81 7.86 16 40 H 0.33 10.44 9.03 -89.69 -0.81 9.63 16 Total: -1.00 -66.90 324.21 2.15 -64.75 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -0.57 Total: 25.03 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 4.99 Total: -19.68 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -3.55 Total: -107.80 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.75 Total: -8.64 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -66.90 2.15 -64.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129555601.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.674 kcal (2) G-P(sol) polarization free energy of solvation -66.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds