Wall clock time and date at job start Mon Mar 30 2020 07:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47301 * 2 1 4 4 N 1.46498 * 109.47059 * 179.97438 * 3 2 1 5 5 C 1.38992 * 119.99694 * 179.72488 * 4 3 2 6 6 C 1.39173 * 120.04556 * 0.27645 * 5 4 3 7 7 N 1.32034 * 120.08114 * 180.02562 * 6 5 4 8 8 C 1.32056 * 120.17375 * 359.97438 * 7 6 5 9 9 C 1.39136 * 120.08304 * 0.02562 * 8 7 6 10 10 N 1.38991 * 120.04398 * 179.97438 * 9 8 7 11 11 C 1.46498 * 120.00284 * 185.00170 * 10 9 8 12 12 C 1.52999 * 109.47481 * 89.99978 * 11 10 9 13 13 C 1.46505 * 119.99934 * 4.99797 * 10 9 8 14 14 C 1.50701 * 109.46860 * 89.99954 * 13 10 9 15 15 H 1.08000 * 120.00198 * 0.02562 * 14 13 10 16 16 C 1.37880 * 120.00124 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99357 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00087 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47377 * 60.00352 * 18 16 14 20 20 H 1.48507 * 109.47195 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47018 * 300.00454 * 18 16 14 22 22 N 1.32736 * 120.04198 * 180.02562 * 5 4 3 23 23 H 1.08990 * 109.47021 * 299.99845 * 1 2 3 24 24 H 1.09002 * 109.46620 * 60.00037 * 1 2 3 25 25 H 1.09001 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47038 * 240.00010 * 2 1 3 27 27 H 1.09000 * 109.46939 * 120.00663 * 2 1 3 28 28 H 1.09004 * 109.47066 * 60.00027 * 3 2 1 29 29 H 1.08994 * 109.46974 * 300.00175 * 3 2 1 30 30 H 0.97001 * 120.00384 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.96000 * 0.02562 * 6 5 4 32 32 H 1.08005 * 119.96342 * 180.02562 * 8 7 6 33 33 H 1.08999 * 109.47381 * 209.99936 * 11 10 9 34 34 H 1.09004 * 109.47278 * 329.99928 * 11 10 9 35 35 H 1.09007 * 109.46608 * 300.00052 * 12 11 10 36 36 H 1.08996 * 109.47038 * 59.99440 * 12 11 10 37 37 H 1.08998 * 109.47393 * 180.02562 * 12 11 10 38 38 H 1.08997 * 109.47019 * 210.00168 * 13 10 9 39 39 H 1.08995 * 109.47104 * 330.00289 * 13 10 9 40 40 H 0.97010 * 119.99204 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2000 2.6461 -0.0050 6 6 3.5051 3.8519 -0.0055 7 7 4.1645 4.9958 -0.0114 8 6 5.4851 5.0006 -0.0164 9 6 6.1869 3.7992 -0.0160 10 7 7.5768 3.8052 -0.0217 11 6 8.3144 2.5443 -0.1319 12 6 8.5647 2.2270 -1.6076 13 6 8.3043 5.0726 0.0823 14 6 8.5601 5.3873 1.5337 15 1 8.2156 4.7107 2.3018 16 6 9.2348 6.5385 1.8811 17 7 9.6546 7.3621 0.9457 18 14 9.5524 6.9281 3.6801 19 1 10.3621 5.8410 4.2866 20 1 10.2897 8.2129 3.7856 21 1 8.2575 7.0405 4.3984 22 7 5.5274 2.6471 -0.0050 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9562 -0.8899 30 1 3.9901 0.6023 0.0006 31 1 2.4251 3.8520 -0.0010 32 1 6.0211 5.9382 -0.0208 33 1 9.2685 2.6349 0.3871 34 1 7.7307 1.7413 0.3184 35 1 7.6104 2.1363 -2.1266 36 1 9.1483 3.0299 -2.0579 37 1 9.1130 1.2886 -1.6895 38 1 9.2548 4.9902 -0.4447 39 1 7.7098 5.8703 -0.3631 40 1 10.1290 8.1722 1.1901 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131456706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:10 Heat of formation + Delta-G solvation = 46.366734 kcal Electronic energy + Delta-G solvation = -19792.962307 eV Core-core repulsion = 16835.592132 eV Total energy + Delta-G solvation = -2957.370175 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.165 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.27395 -37.24571 -36.13239 -33.73923 -32.92289 -32.17068 -30.63592 -28.47634 -26.71653 -25.91782 -23.94577 -23.26336 -22.08511 -21.73315 -20.05449 -17.35483 -16.92862 -16.48109 -15.74878 -15.73094 -15.20793 -15.08778 -14.56615 -14.41067 -13.82292 -13.29935 -13.15117 -12.94818 -12.66515 -12.36434 -12.10802 -11.93340 -11.61085 -11.39792 -11.28040 -11.18118 -10.97610 -10.79267 -10.70002 -10.61543 -10.39029 -10.21981 -10.03634 -9.48494 -8.55165 -8.33557 -7.85012 -6.69775 -6.10191 -4.20787 1.97173 2.14674 3.17860 3.28686 3.33029 3.36717 3.90026 4.38061 4.59465 4.62587 4.72593 4.95143 5.18721 5.24085 5.29637 5.34296 5.34629 5.39778 5.51630 5.62295 5.70624 5.83737 5.86024 5.89781 5.92751 5.99979 6.11060 6.29411 6.39058 6.67139 6.86269 6.98704 7.12859 7.24182 7.63627 7.75634 7.92302 8.09791 8.23551 8.45549 8.77704 8.91133 9.46351 10.92849 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.024391 B = 0.004439 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.671872 B = 6305.796654 C = 6811.795088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.130 3.870 4 N -0.727 5.727 5 C 0.396 3.604 6 C -0.110 4.110 7 N -0.379 5.379 8 C -0.059 4.059 9 C 0.418 3.582 10 N -0.574 5.574 11 C 0.123 3.877 12 C -0.162 4.162 13 C 0.250 3.750 14 C -0.537 4.537 15 H 0.060 0.940 16 C 0.065 3.935 17 N -0.892 5.892 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.275 1.275 22 N -0.578 5.578 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.399 0.601 31 H 0.145 0.855 32 H 0.169 0.831 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.078 -12.942 -3.485 18.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C 0.006 3.994 4 N -0.362 5.362 5 C 0.157 3.843 6 C -0.275 4.275 7 N -0.091 5.091 8 C -0.229 4.229 9 C 0.176 3.824 10 N -0.282 5.282 11 C -0.001 4.001 12 C -0.220 4.220 13 C 0.131 3.869 14 C -0.575 4.575 15 H 0.078 0.922 16 C -0.138 4.138 17 N -0.531 5.531 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.201 1.201 22 N -0.311 5.311 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.234 0.766 31 H 0.162 0.838 32 H 0.186 0.814 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.955 -12.669 -3.508 17.769 hybrid contribution 0.496 -0.126 1.035 1.155 sum -11.458 -12.795 -2.473 17.353 Atomic orbital electron populations 1.21677 0.94606 1.02068 1.02328 1.21701 0.96705 0.96052 1.02826 1.21372 0.79270 0.97223 1.01576 1.44313 1.04953 1.05082 1.81850 1.18934 0.88274 0.87138 0.89982 1.22341 0.99935 0.87326 1.17947 1.67967 1.08550 1.28311 1.04285 1.22960 0.89719 0.98425 1.11828 1.19065 0.86435 0.88953 0.87930 1.47243 1.00104 1.08860 1.72010 1.21235 0.96678 0.86552 0.95653 1.22130 1.01242 1.00787 0.97876 1.19450 0.91650 0.78601 0.97247 1.21480 1.37048 1.06812 0.92210 0.92225 1.24929 0.95228 0.95784 0.97838 1.69916 1.38192 1.12353 1.32603 0.86549 0.78521 0.77569 0.84797 1.20212 1.21108 1.20066 1.67256 1.06623 1.28945 1.28307 0.92304 0.92332 0.92309 0.91327 0.91296 0.91976 0.91999 0.76558 0.83758 0.81403 0.90769 0.90874 0.93126 0.92681 0.92598 0.94260 0.94183 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.13 -0.97 6.05 -26.73 -0.16 -1.13 16 3 C 0.13 1.25 4.90 -4.04 -0.02 1.23 16 4 N -0.73 -9.37 5.73 -60.34 -0.35 -9.71 16 5 C 0.40 6.88 7.66 -154.73 -1.19 5.69 16 6 C -0.11 -1.97 10.48 -17.12 -0.18 -2.15 16 7 N -0.38 -7.84 10.48 -12.70 -0.13 -7.97 16 8 C -0.06 -1.29 10.42 -17.12 -0.18 -1.47 16 9 C 0.42 9.01 7.37 -154.72 -1.14 7.87 16 10 N -0.57 -12.40 2.57 -175.11 -0.45 -12.85 16 11 C 0.12 2.27 6.20 -4.04 -0.03 2.24 16 12 C -0.16 -2.57 10.24 37.16 0.38 -2.19 16 13 C 0.25 6.12 5.01 -5.19 -0.03 6.09 16 14 C -0.54 -14.47 9.39 -34.44 -0.32 -14.79 16 15 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 16 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -25.14 13.29 55.43 0.74 -24.41 16 18 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 N -0.58 -11.35 9.28 -11.43 -0.11 -11.46 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.60 7.94 -51.93 -0.41 0.19 16 29 H 0.06 0.58 7.93 -51.93 -0.41 0.17 16 30 H 0.40 4.76 8.60 -40.82 -0.35 4.40 16 31 H 0.15 2.13 6.71 -52.48 -0.35 1.78 16 32 H 0.17 3.87 6.02 -52.48 -0.32 3.55 16 33 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 34 H 0.07 1.33 7.31 -51.93 -0.38 0.95 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.99 8.07 -51.93 -0.42 0.58 16 39 H 0.04 1.03 5.99 -51.93 -0.31 0.72 16 40 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 333.19 15.07 5.02 5.02 Total: -1.00 -29.49 333.19 -9.19 -38.68 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.30 Total: 3.93 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -2.59 Total: 2.55 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: -0.30 Total: -66.40 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.49 -9.19 -38.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131456706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.044 kcal (2) G-P(sol) polarization free energy of solvation -29.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds