Wall clock time and date at job start Mon Mar 30 2020 07:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47401 * 2 1 4 4 C 1.38989 * 119.99825 * 180.02562 * 3 2 1 5 5 C 1.39171 * 120.04583 * 359.97438 * 4 3 2 6 6 N 1.32037 * 120.07922 * 179.97438 * 5 4 3 7 7 C 1.32063 * 120.17333 * 0.02562 * 6 5 4 8 8 C 1.39134 * 120.07946 * 0.02562 * 7 6 5 9 9 N 1.38997 * 120.03751 * 179.97438 * 8 7 6 10 10 C 1.46498 * 119.99910 * 188.53889 * 9 8 7 11 11 C 1.50705 * 109.47096 * 90.00169 * 10 9 8 12 12 H 1.07995 * 119.99851 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99992 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00241 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99959 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47036 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46990 * 120.00387 * 15 13 11 18 18 H 1.48500 * 109.47122 * 240.00093 * 15 13 11 19 19 C 1.46504 * 120.00202 * 8.54147 * 9 8 7 20 20 C 1.52994 * 109.47038 * 127.23173 * 19 9 8 21 21 C 1.52995 * 109.46964 * 247.23315 * 19 9 8 22 22 N 1.32730 * 120.03859 * 179.97438 * 4 3 2 23 23 H 1.09001 * 109.46841 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46753 * 300.00252 * 1 2 3 25 25 H 1.09003 * 109.46786 * 60.00118 * 1 2 3 26 26 H 1.09002 * 109.47416 * 240.00072 * 2 1 3 27 27 H 1.09006 * 109.47240 * 120.00097 * 2 1 3 28 28 H 0.96999 * 119.99458 * 359.97438 * 3 2 1 29 29 H 1.08000 * 119.96401 * 0.02562 * 5 4 3 30 30 H 1.08002 * 119.96132 * 179.97438 * 7 6 5 31 31 H 1.08999 * 109.47289 * 209.99787 * 10 9 8 32 32 H 1.08999 * 109.47509 * 330.00220 * 10 9 8 33 33 H 0.97002 * 120.00434 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.47078 * 7.23276 * 19 9 8 35 35 H 1.09001 * 109.47102 * 60.00117 * 20 19 9 36 36 H 1.09003 * 109.46850 * 180.02562 * 20 19 9 37 37 H 1.09005 * 109.47308 * 299.99944 * 20 19 9 38 38 H 1.09001 * 109.47350 * 59.99705 * 21 19 9 39 39 H 1.09003 * 109.46980 * 179.97438 * 21 19 9 40 40 H 1.09007 * 109.47361 * 299.99502 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3849 1.6351 -0.0005 5 6 4.2901 0.5779 -0.0005 6 7 5.5884 0.8184 -0.0016 7 6 6.0332 2.0618 -0.0021 8 6 5.1344 3.1239 -0.0010 9 7 5.6035 4.4323 -0.0010 10 6 4.6698 5.5452 0.1885 11 6 4.5495 5.8552 1.6584 12 1 5.1125 5.2810 2.3792 13 6 3.7214 6.8726 2.0828 14 7 3.0369 7.5729 1.2049 15 14 3.5717 7.2564 3.9048 16 1 4.4387 6.3317 4.6784 17 1 3.9980 8.6573 4.1523 18 1 2.1598 7.0859 4.3322 19 6 7.0317 4.6985 -0.1906 20 6 7.2161 5.7062 -1.3269 21 6 7.6192 5.2723 1.1003 22 7 3.8283 2.8862 -0.0011 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.3881 2.1185 -0.0004 29 1 3.9302 -0.4403 -0.0005 30 1 7.0959 2.2545 -0.0025 31 1 5.0403 6.4242 -0.3390 32 1 3.6917 5.2702 -0.2061 33 1 2.4540 8.2885 1.5035 34 1 7.5441 3.7699 -0.4417 35 1 6.7037 6.6349 -1.0758 36 1 8.2787 5.9039 -1.4682 37 1 6.7975 5.2974 -2.2466 38 1 7.4877 4.5544 1.9099 39 1 8.6818 5.4700 0.9594 40 1 7.1067 6.2011 1.3514 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131560562.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:52 Heat of formation + Delta-G solvation = 36.388798 kcal Electronic energy + Delta-G solvation = -20374.562250 eV Core-core repulsion = 17416.759399 eV Total energy + Delta-G solvation = -2957.802851 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.165 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.75850 -38.94405 -37.26171 -34.97241 -34.77903 -32.98758 -31.33490 -29.96331 -28.38399 -27.98926 -25.57138 -24.71726 -23.79263 -22.91099 -20.79909 -18.76416 -18.63673 -18.33120 -17.26990 -16.90223 -16.55081 -16.30553 -15.81783 -15.52310 -15.10704 -14.72299 -14.58531 -14.09619 -13.78878 -13.35235 -13.21792 -13.07421 -12.84658 -12.79528 -12.78963 -12.58570 -12.51101 -12.41449 -12.17034 -12.00349 -11.99141 -11.64510 -11.42982 -11.14082 -10.57118 -9.79388 -9.14989 -8.36800 -8.00573 -6.26613 0.47867 0.66356 1.33955 1.35843 1.47017 1.99228 2.35661 2.50399 3.13188 3.15130 3.71241 3.80290 3.91009 4.10926 4.22831 4.27355 4.28347 4.33288 4.38965 4.55016 4.66892 4.85571 4.87540 4.94425 4.97209 5.03856 5.08796 5.19779 5.23629 5.27191 5.45128 5.46469 5.56701 5.74478 5.94361 6.14756 6.26696 6.58326 6.60213 6.85560 6.96765 7.37635 7.46105 8.90316 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.013966 B = 0.007159 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.444534 B = 3910.054618 C = 5281.461095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.119 3.881 3 N -0.719 5.719 4 C 0.393 3.607 5 C -0.100 4.100 6 N -0.383 5.383 7 C -0.102 4.102 8 C 0.402 3.598 9 N -0.582 5.582 10 C 0.272 3.728 11 C -0.517 4.517 12 H 0.046 0.954 13 C 0.011 3.989 14 N -0.928 5.928 15 Si 0.953 3.047 16 H -0.273 1.273 17 H -0.273 1.273 18 H -0.283 1.283 19 C 0.139 3.861 20 C -0.153 4.153 21 C -0.152 4.152 22 N -0.593 5.593 23 H 0.098 0.902 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.400 0.600 29 H 0.181 0.819 30 H 0.175 0.825 31 H 0.020 0.980 32 H 0.009 0.991 33 H 0.263 0.737 34 H 0.105 0.895 35 H 0.042 0.958 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.040 0.960 39 H 0.090 0.910 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 -12.568 -3.568 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.004 4.004 3 N -0.352 5.352 4 C 0.150 3.850 5 C -0.268 4.268 6 N -0.095 5.095 7 C -0.270 4.270 8 C 0.161 3.839 9 N -0.291 5.291 10 C 0.151 3.849 11 C -0.556 4.556 12 H 0.064 0.936 13 C -0.187 4.187 14 N -0.568 5.568 15 Si 0.779 3.221 16 H -0.198 1.198 17 H -0.199 1.199 18 H -0.209 1.209 19 C 0.036 3.964 20 C -0.211 4.211 21 C -0.210 4.210 22 N -0.326 5.326 23 H 0.117 0.883 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.235 0.765 29 H 0.198 0.802 30 H 0.192 0.808 31 H 0.038 0.962 32 H 0.027 0.973 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.061 0.939 36 H 0.116 0.884 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.108 0.892 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.961 -12.446 -3.591 13.102 hybrid contribution -0.884 1.115 0.985 1.730 sum 1.077 -11.331 -2.606 11.677 Atomic orbital electron populations 1.21954 0.92711 1.04365 1.02499 1.21620 0.95968 0.80438 1.02357 1.44825 1.01443 1.09446 1.79481 1.19428 0.87732 0.89005 0.88844 1.22826 0.88354 0.99433 1.16227 1.67912 1.15682 1.21516 1.04433 1.22785 1.00595 0.87177 1.16492 1.19326 0.88568 0.87526 0.88492 1.47205 1.08051 1.01981 1.71877 1.18702 0.87786 0.83484 0.94974 1.21670 1.25027 1.15602 0.93274 0.93564 1.25661 0.95302 0.96169 1.01562 1.70048 1.29211 1.22378 1.35200 0.85578 0.77682 0.78139 0.80662 1.19765 1.19883 1.20897 1.21315 0.79057 0.99934 0.96089 1.22097 1.03291 0.98660 0.97049 1.22117 1.01151 1.01162 0.96567 1.67434 1.15839 1.21965 1.27383 0.88341 0.92465 0.92065 0.90645 0.91129 0.76474 0.80227 0.80809 0.96237 0.97257 0.92768 0.87695 0.93869 0.88385 0.93025 0.94040 0.89152 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 10.03 71.98 0.72 -1.57 16 2 C 0.12 2.26 5.62 86.38 0.49 2.74 16 3 N -0.72 -21.05 5.73 -344.78 -1.97 -23.03 16 4 C 0.39 14.54 7.66 132.98 1.02 15.56 16 5 C -0.10 -3.34 10.48 84.89 0.89 -2.45 16 6 N -0.38 -13.81 10.48 -194.09 -2.03 -15.85 16 7 C -0.10 -3.81 10.40 84.87 0.88 -2.93 16 8 C 0.40 17.42 7.35 132.96 0.98 18.39 16 9 N -0.58 -25.32 2.50 -683.92 -1.71 -27.03 16 10 C 0.27 14.37 4.87 85.63 0.42 14.79 16 11 C -0.52 -29.12 7.88 25.60 0.20 -28.92 16 12 H 0.05 2.66 7.58 -2.91 -0.02 2.63 16 13 C 0.01 0.65 5.46 84.65 0.46 1.11 16 14 N -0.93 -55.32 13.29 21.45 0.28 -55.04 16 15 Si 0.95 45.10 29.54 68.60 2.03 47.13 16 16 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 19 C 0.14 4.66 3.11 44.99 0.14 4.80 16 20 C -0.15 -4.64 9.01 71.98 0.65 -3.99 16 21 C -0.15 -5.03 8.67 71.98 0.62 -4.41 16 22 N -0.59 -26.85 9.28 -190.07 -1.76 -28.61 16 23 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.08 1.26 7.94 -2.39 -0.02 1.24 16 27 H 0.07 1.25 7.94 -2.38 -0.02 1.23 16 28 H 0.40 12.30 8.60 -92.71 -0.80 11.50 16 29 H 0.18 4.58 6.71 -2.91 -0.02 4.57 16 30 H 0.18 5.47 5.92 -2.91 -0.02 5.45 16 31 H 0.02 1.08 6.08 -2.39 -0.01 1.06 16 32 H 0.01 0.56 7.28 -2.39 -0.02 0.54 16 33 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.11 2.95 5.50 -2.39 -0.01 2.93 16 35 H 0.04 1.54 6.48 -2.39 -0.02 1.53 16 36 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.05 1.86 6.94 -2.38 -0.02 1.84 16 Total: -1.00 -69.41 324.92 2.54 -66.87 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.24 Total: 22.42 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 7.47 Total: 13.13 kcal Atomic # 7 Polarization: -142.36 SS G_CDS: -7.20 Total: -149.55 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -69.41 2.54 -66.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131560562.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.262 kcal (2) G-P(sol) polarization free energy of solvation -69.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds