Wall clock time and date at job start Mon Mar 30 2020 06:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47175 * 2 1 4 4 H 1.08994 * 109.47362 * 305.00131 * 3 2 1 5 5 O 1.42903 * 109.47021 * 64.99905 * 3 2 1 6 6 C 1.50694 * 109.47166 * 184.99766 * 3 2 1 7 7 C 1.38278 * 119.53368 * 124.97656 * 6 3 2 8 8 C 1.38502 * 119.24243 * 180.02562 * 7 6 3 9 9 C 1.39312 * 118.35459 * 0.02562 * 8 7 6 10 10 N 1.39710 * 120.48757 * 180.02562 * 9 8 7 11 11 C 1.46497 * 120.00237 * 359.97438 * 10 9 8 12 12 C 1.52998 * 109.47345 * 89.99799 * 11 10 9 13 13 C 1.46504 * 119.99750 * 179.97438 * 10 9 8 14 14 C 1.50697 * 109.46972 * 89.99884 * 13 10 9 15 15 H 1.07993 * 120.00548 * 0.02562 * 14 13 10 16 16 C 1.37884 * 119.99539 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99618 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00251 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46910 * 90.00176 * 18 16 14 20 20 H 1.48498 * 109.47360 * 210.00035 * 18 16 14 21 21 H 1.48499 * 109.47102 * 330.00569 * 18 16 14 22 22 C 1.38885 * 119.01906 * 359.97438 * 9 8 7 23 23 N 1.31824 * 120.65643 * 359.97438 * 22 9 8 24 24 H 1.08999 * 109.47391 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47352 * 299.99665 * 1 2 3 26 26 H 1.09002 * 109.47158 * 59.99984 * 1 2 3 27 27 H 1.09000 * 109.46865 * 240.00337 * 2 1 3 28 28 H 1.09001 * 109.47158 * 120.00569 * 2 1 3 29 29 H 0.96706 * 113.99709 * 60.00521 * 5 3 2 30 30 H 1.07995 * 120.38031 * 0.04970 * 7 6 3 31 31 H 1.08002 * 120.82142 * 179.97438 * 8 7 6 32 32 H 1.09006 * 109.47209 * 210.00131 * 11 10 9 33 33 H 1.09007 * 109.47052 * 329.99473 * 11 10 9 34 34 H 1.09002 * 109.46876 * 59.99999 * 12 11 10 35 35 H 1.08999 * 109.46843 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.46803 * 300.00148 * 12 11 10 37 37 H 1.09000 * 109.47038 * 210.00435 * 13 10 9 38 38 H 1.09004 * 109.47161 * 330.00016 * 13 10 9 39 39 H 0.96998 * 119.99928 * 179.97438 * 17 16 14 40 40 H 1.07997 * 119.67477 * 179.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 8 1.6619 2.0814 1.2211 6 6 3.5418 1.4443 -0.1238 7 6 4.1410 2.1631 -1.1418 8 6 5.5218 2.1601 -1.2502 9 6 6.2568 1.4264 -0.3217 10 7 7.6518 1.3927 -0.3891 11 6 8.3524 2.1321 -1.4421 12 6 8.6656 3.5465 -0.9502 13 6 8.4142 0.6181 0.5933 14 6 8.6072 -0.7872 0.0844 15 1 8.2029 -1.0745 -0.8749 16 6 9.3000 -1.7062 0.8438 17 7 9.4689 -2.9325 0.3995 18 14 9.9999 -1.2092 2.5028 19 1 8.9915 -1.4654 3.5624 20 1 11.2236 -2.0029 2.7818 21 1 10.3411 0.2360 2.4833 22 6 5.5822 0.7297 0.6726 23 7 4.2661 0.7605 0.7401 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0142 1.6542 2.0139 30 1 3.5392 2.7208 -1.8441 31 1 6.0163 2.7123 -2.0357 32 1 9.2819 1.6192 -1.6893 33 1 7.7209 2.1873 -2.3289 34 1 9.2971 3.4913 -0.0634 35 1 9.1864 4.0967 -1.7339 36 1 7.7361 4.0594 -0.7030 37 1 9.3867 1.0851 0.7487 38 1 7.8691 0.5912 1.5369 39 1 9.9566 -3.5789 0.9335 40 1 6.1415 0.1572 1.3977 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131999406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:01 Heat of formation + Delta-G solvation = -21.468537 kcal Electronic energy + Delta-G solvation = -20053.933252 eV Core-core repulsion = 17061.328767 eV Total energy + Delta-G solvation = -2992.604485 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.01397 -37.68911 -36.17931 -32.92718 -32.66624 -31.69366 -31.24753 -29.77314 -27.35870 -25.49125 -23.76295 -22.60821 -22.25861 -20.98192 -19.95537 -17.31247 -17.01294 -16.42191 -16.18568 -15.37207 -15.03264 -14.37265 -14.29860 -14.15361 -13.58235 -13.44949 -13.19133 -12.86374 -12.69291 -12.45784 -12.22451 -12.08835 -11.89412 -11.81295 -11.51835 -11.11554 -10.85026 -10.77413 -10.68893 -10.52959 -10.41253 -9.97151 -9.76196 -9.46038 -8.97152 -8.88453 -8.71932 -6.67728 -6.21677 -4.23126 1.74125 1.91518 3.17748 3.24709 3.26426 3.76171 4.26126 4.27086 4.69626 4.81033 4.89946 5.08163 5.17699 5.21959 5.25785 5.38981 5.44650 5.55346 5.62419 5.64042 5.77882 5.84174 5.87377 5.98363 6.05423 6.07472 6.18549 6.26931 6.38825 6.40258 6.53937 6.55949 6.63207 6.73295 7.11376 7.43361 7.79193 7.81112 8.04793 8.39556 8.59362 8.84603 9.37339 10.91203 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.005504 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.395826 B = 5085.779196 C = 5995.501241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.149 4.149 3 C 0.176 3.824 4 H 0.101 0.899 5 O -0.562 6.562 6 C -0.002 4.002 7 C -0.109 4.109 8 C -0.180 4.180 9 C 0.197 3.803 10 N -0.595 5.595 11 C 0.119 3.881 12 C -0.170 4.170 13 C 0.219 3.781 14 C -0.540 4.540 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.892 5.892 18 Si 0.871 3.129 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.265 1.265 22 C 0.038 3.962 23 N -0.438 5.438 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.379 0.621 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.032 0.968 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.601 10.435 -1.995 14.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.117 3.883 4 H 0.118 0.882 5 O -0.367 6.367 6 C -0.141 4.141 7 C -0.129 4.129 8 C -0.211 4.211 9 C 0.088 3.912 10 N -0.299 5.299 11 C -0.005 4.005 12 C -0.228 4.228 13 C 0.099 3.901 14 C -0.578 4.578 15 H 0.095 0.905 16 C -0.128 4.128 17 N -0.529 5.529 18 Si 0.698 3.302 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.190 1.190 22 C -0.127 4.127 23 N -0.147 5.147 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.227 0.773 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.014 10.182 -1.713 14.384 hybrid contribution 1.418 0.043 0.381 1.469 sum -8.596 10.226 -1.332 13.425 Atomic orbital electron populations 1.21724 0.95636 1.01194 1.01925 1.22149 0.95885 0.97074 1.03570 1.20530 0.87290 0.92969 0.87549 0.88159 1.86469 1.76478 1.57738 1.16005 1.21368 0.96656 1.00267 0.95828 1.21511 0.94399 0.98721 0.98301 1.20991 0.93766 1.04978 1.01332 1.18954 0.85163 0.93124 0.93988 1.46866 1.01269 1.50280 1.31492 1.21325 0.97781 0.91409 0.90029 1.22231 1.01587 0.97353 1.01646 1.19719 0.91094 0.91731 0.87602 1.21421 1.36115 0.93303 1.06988 0.90531 1.24885 0.95412 0.94694 0.97797 1.69891 1.41060 1.03730 1.38235 0.86925 0.79384 0.79137 0.84765 1.19731 1.20872 1.19004 1.22455 0.89294 1.01521 0.99456 1.67152 1.06970 1.15738 1.24831 0.93034 0.92249 0.93099 0.91371 0.90657 0.77311 0.85973 0.85524 0.90084 0.91645 0.92452 0.92228 0.92848 0.95035 0.95483 0.92375 0.82235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.81 37.16 0.36 -1.19 16 2 C -0.15 -1.88 5.42 -26.73 -0.14 -2.02 16 3 C 0.18 2.37 3.29 -27.89 -0.09 2.28 16 4 H 0.10 1.19 7.86 -51.93 -0.41 0.79 16 5 O -0.56 -7.77 12.86 -35.23 -0.45 -8.23 16 6 C 0.00 -0.03 5.78 -82.57 -0.48 -0.51 16 7 C -0.11 -1.65 9.70 -39.47 -0.38 -2.03 16 8 C -0.18 -2.93 9.30 -39.08 -0.36 -3.29 16 9 C 0.20 3.74 6.57 -83.63 -0.55 3.19 16 10 N -0.59 -11.53 2.59 -172.98 -0.45 -11.98 16 11 C 0.12 1.89 5.91 -4.04 -0.02 1.86 16 12 C -0.17 -2.26 10.24 37.16 0.38 -1.87 16 13 C 0.22 4.88 3.99 -5.19 -0.02 4.85 16 14 C -0.54 -14.40 9.94 -34.44 -0.34 -14.74 16 15 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 16 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 18 Si 0.87 20.13 27.47 -169.99 -4.67 15.46 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 22 C 0.04 0.75 10.38 -17.32 -0.18 0.57 16 23 N -0.44 -8.03 9.94 -9.30 -0.09 -8.12 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 29 H 0.38 4.71 9.02 45.56 0.41 5.12 16 30 H 0.12 1.47 7.94 -52.49 -0.42 1.05 16 31 H 0.13 1.78 6.27 -52.49 -0.33 1.45 16 32 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.07 0.94 6.25 -51.93 -0.32 0.62 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 38 H 0.03 0.60 5.65 -51.93 -0.29 0.31 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.16 3.35 6.16 -52.49 -0.32 3.03 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -29.62 328.85 -7.29 -36.91 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.43 Total: 7.46 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.93 Total: -10.94 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.23 Total: -45.63 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.45 Total: -8.23 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.67 Total: 15.46 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.62 -7.29 -36.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131999406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.443 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds