Wall clock time and date at job start Mon Mar 30 2020 06:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 O 1.42899 * 109.47478 * 295.00066 * 3 2 1 6 6 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 7 7 C 1.38275 * 119.53307 * 125.00235 * 6 3 2 8 8 C 1.38500 * 119.23667 * 179.97438 * 7 6 3 9 9 C 1.39312 * 118.36274 * 359.97438 * 8 7 6 10 10 N 1.39703 * 120.49245 * 179.97438 * 9 8 7 11 11 C 1.46494 * 120.00064 * 0.02562 * 10 9 8 12 12 C 1.53007 * 109.47210 * 90.00170 * 11 10 9 13 13 C 1.46501 * 119.99592 * 180.02562 * 10 9 8 14 14 C 1.50703 * 109.47107 * 90.00122 * 13 10 9 15 15 H 1.07993 * 120.00227 * 359.97438 * 14 13 10 16 16 C 1.37877 * 119.99864 * 179.97438 * 14 13 10 17 17 N 1.31511 * 120.00376 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99909 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47410 * 89.99854 * 18 16 14 20 20 H 1.48502 * 109.47181 * 210.00418 * 18 16 14 21 21 H 1.48503 * 109.47081 * 329.99933 * 18 16 14 22 22 C 1.38892 * 119.01296 * 0.02562 * 9 8 7 23 23 N 1.31824 * 120.65393 * 359.74035 * 22 9 8 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96705 * 114.00115 * 300.00173 * 5 3 2 30 30 H 1.07991 * 120.38108 * 359.97438 * 7 6 3 31 31 H 1.08003 * 120.81496 * 180.02562 * 8 7 6 32 32 H 1.09007 * 109.47053 * 209.99815 * 11 10 9 33 33 H 1.08999 * 109.47791 * 330.00075 * 11 10 9 34 34 H 1.08996 * 109.46467 * 59.99688 * 12 11 10 35 35 H 1.08992 * 109.46781 * 179.97438 * 12 11 10 36 36 H 1.08994 * 109.46560 * 300.00063 * 12 11 10 37 37 H 1.08999 * 109.46692 * 209.99658 * 13 10 9 38 38 H 1.08992 * 109.47148 * 329.99527 * 13 10 9 39 39 H 0.96996 * 120.00404 * 180.02562 * 17 16 14 40 40 H 1.07993 * 119.67456 * 180.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 8 1.6621 2.0814 -1.2210 6 6 3.5419 1.4442 0.1239 7 6 4.3030 2.1062 -0.8219 8 6 5.6828 2.1044 -0.7018 9 6 6.2524 1.4305 0.3763 10 7 7.6394 1.3997 0.5403 11 6 8.5064 2.0797 -0.4251 12 6 8.7418 3.5220 0.0283 13 6 8.2268 0.6873 1.6777 14 6 8.4939 -0.7444 1.2901 15 1 8.2500 -1.0892 0.2962 16 6 9.0495 -1.6140 2.2045 17 7 9.2821 -2.8634 1.8666 18 14 9.4720 -1.0173 3.9235 19 1 8.3032 -1.2161 4.8177 20 1 10.6303 -1.7871 4.4440 21 1 9.8184 0.4260 3.8753 22 6 5.4208 0.7888 1.2850 23 7 4.1114 0.8193 1.1356 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0142 1.6542 -2.0139 30 1 3.8271 2.6187 -1.6447 31 1 6.3019 2.6135 -1.4257 32 1 9.4615 1.5578 -0.4865 33 1 8.0291 2.0802 -1.4050 34 1 9.2192 3.5214 1.0081 35 1 9.3872 4.0278 -0.6898 36 1 7.7868 4.0438 0.0896 37 1 9.1631 1.1672 1.9626 38 1 7.5346 0.7129 2.5192 39 1 9.6726 -3.4753 2.5099 40 1 5.8509 0.2635 2.1249 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131999598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:03 Heat of formation + Delta-G solvation = -19.631418 kcal Electronic energy + Delta-G solvation = -20057.410075 eV Core-core repulsion = 17064.885254 eV Total energy + Delta-G solvation = -2992.524821 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.03707 -37.80234 -36.24931 -32.98760 -32.74736 -31.54600 -31.24575 -29.68081 -27.41417 -25.49520 -23.74351 -22.56570 -22.12822 -21.24422 -19.87547 -17.45216 -17.00513 -16.30180 -16.27892 -15.34397 -15.15754 -14.41902 -14.35818 -14.11789 -13.58199 -13.46257 -13.15077 -12.87400 -12.69315 -12.45823 -12.22061 -12.11194 -11.86864 -11.70501 -11.50996 -11.12530 -10.86521 -10.81087 -10.69288 -10.52495 -10.40997 -10.13301 -9.74372 -9.44086 -8.94231 -8.85824 -8.71199 -6.64978 -6.21103 -4.22502 1.75827 1.93947 3.18310 3.25175 3.26934 3.77447 4.26761 4.31959 4.40946 4.71569 5.06820 5.09679 5.15733 5.21494 5.26926 5.44155 5.50056 5.55913 5.58418 5.65086 5.78939 5.84438 5.88337 5.98793 6.08284 6.09500 6.20414 6.27095 6.37861 6.40742 6.55467 6.56831 6.62519 6.74296 7.12724 7.44072 7.61206 7.82488 8.06492 8.40300 8.62632 8.85117 9.38000 10.91774 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019344 B = 0.005451 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.131643 B = 5135.195303 C = 6134.765545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.174 3.826 4 H 0.106 0.894 5 O -0.559 6.559 6 C -0.003 4.003 7 C -0.115 4.115 8 C -0.179 4.179 9 C 0.195 3.805 10 N -0.595 5.595 11 C 0.119 3.881 12 C -0.170 4.170 13 C 0.219 3.781 14 C -0.539 4.539 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.892 5.892 18 Si 0.871 3.129 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.265 1.265 22 C 0.039 3.961 23 N -0.438 5.438 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.373 0.627 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.032 0.968 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 10.213 -4.873 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.114 3.886 4 H 0.123 0.877 5 O -0.364 6.364 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.209 4.209 9 C 0.085 3.915 10 N -0.300 5.300 11 C -0.005 4.005 12 C -0.228 4.228 13 C 0.098 3.902 14 C -0.578 4.578 15 H 0.095 0.905 16 C -0.128 4.128 17 N -0.529 5.529 18 Si 0.698 3.302 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.190 1.190 22 C -0.126 4.126 23 N -0.147 5.147 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.221 0.779 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.678 10.007 -3.759 14.420 hybrid contribution 1.384 0.073 -0.056 1.387 sum -8.294 10.079 -3.815 13.599 Atomic orbital electron populations 1.21721 0.95561 1.01211 1.01948 1.22142 0.96018 0.96725 1.03610 1.20367 0.88161 0.93135 0.86925 0.87679 1.86547 1.76405 1.57634 1.15797 1.21374 0.96646 1.01487 0.94678 1.21450 0.93367 0.99080 0.99644 1.20987 0.94901 1.05588 0.99456 1.18963 0.85460 0.93175 0.93896 1.46849 1.00953 1.54129 1.28042 1.21318 0.95416 0.91963 0.91813 1.22231 1.01480 0.97292 1.01818 1.19715 0.93504 0.92709 0.84225 1.21422 1.42300 0.92672 1.01397 0.90537 1.24882 0.94854 0.94656 0.98393 1.69888 1.43283 1.04202 1.35571 0.86928 0.78832 0.79364 0.85106 1.19728 1.20877 1.19005 1.22465 0.87672 1.01834 1.00665 1.67138 1.12088 1.14897 1.20550 0.92445 0.92863 0.93024 0.89822 0.92021 0.77935 0.85429 0.85575 0.90110 0.91662 0.92470 0.92240 0.92854 0.95052 0.95488 0.92379 0.82231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.81 37.16 0.36 -1.18 16 2 C -0.15 -1.84 5.53 -26.74 -0.15 -1.99 16 3 C 0.17 2.31 3.45 -27.89 -0.10 2.22 16 4 H 0.11 1.42 8.14 -51.93 -0.42 0.99 16 5 O -0.56 -6.63 11.75 -35.23 -0.41 -7.04 16 6 C 0.00 -0.04 6.16 -82.57 -0.51 -0.55 16 7 C -0.12 -1.73 9.23 -39.47 -0.36 -2.09 16 8 C -0.18 -2.90 9.30 -39.09 -0.36 -3.27 16 9 C 0.19 3.70 6.57 -83.63 -0.55 3.16 16 10 N -0.60 -11.59 2.59 -172.99 -0.45 -12.04 16 11 C 0.12 1.90 5.91 -4.04 -0.02 1.88 16 12 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 13 C 0.22 4.90 3.99 -5.19 -0.02 4.88 16 14 C -0.54 -14.43 9.94 -34.44 -0.34 -14.77 16 15 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 16 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 17 N -0.89 -26.35 13.96 55.43 0.77 -25.57 16 18 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 22 C 0.04 0.77 10.38 -17.31 -0.18 0.59 16 23 N -0.44 -8.22 9.78 -9.30 -0.09 -8.31 16 24 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 1.19 7.80 -51.93 -0.41 0.78 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.37 3.34 8.29 45.56 0.38 3.71 16 30 H 0.13 1.55 6.72 -52.49 -0.35 1.20 16 31 H 0.13 1.78 6.27 -52.48 -0.33 1.45 16 32 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.07 0.94 6.25 -51.93 -0.32 0.62 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 38 H 0.03 0.60 5.65 -51.93 -0.29 0.31 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 40 H 0.16 3.39 6.16 -52.49 -0.32 3.07 16 LS Contribution 325.82 15.07 4.91 4.91 Total: -1.00 -29.83 325.82 -7.28 -37.12 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.39 Total: 6.45 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -1.95 Total: -11.04 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.23 Total: -45.92 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.41 Total: -7.04 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.83 -7.28 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131999598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.486 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds