Wall clock time and date at job start Mon Mar 30 2020 06:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 O 1.42899 * 109.47478 * 295.00066 * 3 2 1 6 6 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 7 7 C 1.38275 * 119.53307 * 125.00235 * 6 3 2 8 8 C 1.38500 * 119.23667 * 179.97438 * 7 6 3 9 9 C 1.39312 * 118.36274 * 359.97438 * 8 7 6 10 10 N 1.39703 * 120.49245 * 179.97438 * 9 8 7 11 11 C 1.46494 * 120.00064 * 0.02562 * 10 9 8 12 12 C 1.53007 * 109.47210 * 90.00170 * 11 10 9 13 13 C 1.46501 * 119.99592 * 180.02562 * 10 9 8 14 14 C 1.50703 * 109.47107 * 90.00122 * 13 10 9 15 15 H 1.07993 * 120.00227 * 359.97438 * 14 13 10 16 16 C 1.37877 * 119.99864 * 179.97438 * 14 13 10 17 17 N 1.31511 * 120.00376 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99909 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47410 * 89.99854 * 18 16 14 20 20 H 1.48502 * 109.47181 * 210.00418 * 18 16 14 21 21 H 1.48503 * 109.47081 * 329.99933 * 18 16 14 22 22 C 1.38892 * 119.01296 * 0.02562 * 9 8 7 23 23 N 1.31824 * 120.65393 * 359.74035 * 22 9 8 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96705 * 114.00115 * 300.00173 * 5 3 2 30 30 H 1.07991 * 120.38108 * 359.97438 * 7 6 3 31 31 H 1.08003 * 120.81496 * 180.02562 * 8 7 6 32 32 H 1.09007 * 109.47053 * 209.99815 * 11 10 9 33 33 H 1.08999 * 109.47791 * 330.00075 * 11 10 9 34 34 H 1.08996 * 109.46467 * 59.99688 * 12 11 10 35 35 H 1.08992 * 109.46781 * 179.97438 * 12 11 10 36 36 H 1.08994 * 109.46560 * 300.00063 * 12 11 10 37 37 H 1.08999 * 109.46692 * 209.99658 * 13 10 9 38 38 H 1.08992 * 109.47148 * 329.99527 * 13 10 9 39 39 H 0.96996 * 120.00404 * 180.02562 * 17 16 14 40 40 H 1.07993 * 119.67456 * 180.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 8 1.6621 2.0814 -1.2210 6 6 3.5419 1.4442 0.1239 7 6 4.3030 2.1062 -0.8219 8 6 5.6828 2.1044 -0.7018 9 6 6.2524 1.4305 0.3763 10 7 7.6394 1.3997 0.5403 11 6 8.5064 2.0797 -0.4251 12 6 8.7418 3.5220 0.0283 13 6 8.2268 0.6873 1.6777 14 6 8.4939 -0.7444 1.2901 15 1 8.2500 -1.0892 0.2962 16 6 9.0495 -1.6140 2.2045 17 7 9.2821 -2.8634 1.8666 18 14 9.4720 -1.0173 3.9235 19 1 8.3032 -1.2161 4.8177 20 1 10.6303 -1.7871 4.4440 21 1 9.8184 0.4260 3.8753 22 6 5.4208 0.7888 1.2850 23 7 4.1114 0.8193 1.1356 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0142 1.6542 -2.0139 30 1 3.8271 2.6187 -1.6447 31 1 6.3019 2.6135 -1.4257 32 1 9.4615 1.5578 -0.4865 33 1 8.0291 2.0802 -1.4050 34 1 9.2192 3.5214 1.0081 35 1 9.3872 4.0278 -0.6898 36 1 7.7868 4.0438 0.0896 37 1 9.1631 1.1672 1.9626 38 1 7.5346 0.7129 2.5192 39 1 9.6726 -3.4753 2.5099 40 1 5.8509 0.2635 2.1249 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131999598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:03 Heat of formation + Delta-G solvation = -39.607705 kcal Electronic energy + Delta-G solvation = -20058.276312 eV Core-core repulsion = 17064.885254 eV Total energy + Delta-G solvation = -2993.391058 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.37107 -39.00106 -37.54811 -34.91778 -33.81209 -32.96384 -32.47872 -31.21831 -28.93232 -26.69980 -25.28437 -23.88828 -23.53968 -22.39334 -21.27019 -19.08330 -18.71025 -17.67936 -17.52168 -16.52276 -16.41369 -16.09952 -15.75071 -15.39101 -14.97033 -14.75335 -14.56762 -14.26779 -14.00141 -13.74398 -13.60590 -13.40341 -13.11920 -12.98000 -12.72605 -12.57642 -12.41402 -12.11498 -11.90016 -11.82525 -11.79702 -11.75024 -11.26236 -10.95840 -10.83834 -10.30973 -10.17462 -8.35000 -8.11463 -6.40659 0.40167 0.58858 1.34345 1.35433 1.44737 2.29327 2.34260 2.97293 2.99986 3.34199 3.56712 3.89948 3.98541 4.10582 4.15492 4.19383 4.29162 4.39272 4.45425 4.59653 4.64854 4.74557 4.79614 4.82995 4.86152 4.92925 4.95192 5.04448 5.17810 5.22411 5.25131 5.34051 5.40316 5.43976 5.46028 5.76960 6.04586 6.48976 6.63206 6.66124 6.78100 7.24753 7.25968 8.82391 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019344 B = 0.005451 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.131643 B = 5135.195303 C = 6134.765545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.144 4.144 3 C 0.183 3.817 4 H 0.106 0.894 5 O -0.556 6.556 6 C -0.004 4.004 7 C -0.107 4.107 8 C -0.168 4.168 9 C 0.174 3.826 10 N -0.607 5.607 11 C 0.113 3.887 12 C -0.158 4.158 13 C 0.231 3.769 14 C -0.537 4.537 15 H 0.027 0.973 16 C 0.016 3.984 17 N -0.945 5.945 18 Si 0.942 3.058 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.241 1.241 22 C 0.005 3.995 23 N -0.456 5.456 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.388 0.612 30 H 0.166 0.834 31 H 0.154 0.846 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.041 0.959 38 H 0.028 0.972 39 H 0.268 0.732 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.160 12.843 -5.599 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.182 4.182 3 C 0.123 3.877 4 H 0.123 0.877 5 O -0.362 6.362 6 C -0.145 4.145 7 C -0.127 4.127 8 C -0.198 4.198 9 C 0.066 3.934 10 N -0.313 5.313 11 C -0.009 4.009 12 C -0.216 4.216 13 C 0.108 3.892 14 C -0.576 4.576 15 H 0.045 0.955 16 C -0.183 4.183 17 N -0.584 5.584 18 Si 0.765 3.235 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.164 1.164 22 C -0.158 4.158 23 N -0.166 5.166 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.238 0.762 30 H 0.184 0.816 31 H 0.171 0.829 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.077 0.923 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.686 12.664 -4.510 17.173 hybrid contribution 1.554 -0.758 -0.013 1.729 sum -9.132 11.907 -4.523 15.672 Atomic orbital electron populations 1.21675 0.93744 1.01911 1.02507 1.22085 0.97551 0.96032 1.02533 1.20264 0.86104 0.93580 0.87802 0.87685 1.86539 1.76262 1.57596 1.15844 1.22014 0.98363 1.00188 0.93890 1.21867 0.92855 0.97981 0.99948 1.21338 0.95798 1.04217 0.98480 1.19119 0.85180 0.94201 0.94898 1.46801 1.01581 1.54781 1.28169 1.21525 0.94306 0.93098 0.92001 1.22126 1.02135 0.95370 1.01970 1.19377 0.93958 0.90266 0.85582 1.21621 1.41441 0.95292 0.99229 0.95464 1.25818 0.94753 0.94564 1.03143 1.70051 1.45115 1.05883 1.37393 0.85796 0.78536 0.80099 0.79087 1.19292 1.20616 1.16389 1.22195 0.88674 1.03683 1.01248 1.67088 1.11587 1.15842 1.22066 0.91555 0.92575 0.92324 0.92074 0.91996 0.76205 0.81629 0.82877 0.91630 0.89950 0.93505 0.89356 0.92531 0.94150 0.95391 0.92305 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.81 71.98 0.71 -1.97 16 2 C -0.14 -3.42 5.53 30.59 0.17 -3.25 16 3 C 0.18 4.48 3.45 29.85 0.10 4.58 16 4 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 5 O -0.56 -11.16 11.75 -148.98 -1.75 -12.91 16 6 C 0.00 -0.12 6.16 42.56 0.26 0.15 16 7 C -0.11 -2.87 9.23 22.34 0.21 -2.67 16 8 C -0.17 -5.06 9.30 22.59 0.21 -4.85 16 9 C 0.17 6.60 6.57 38.30 0.25 6.85 16 10 N -0.61 -23.69 2.59 -701.21 -1.82 -25.51 16 11 C 0.11 3.49 5.91 86.38 0.51 4.00 16 12 C -0.16 -3.81 10.24 71.98 0.74 -3.07 16 13 C 0.23 10.45 3.99 85.63 0.34 10.79 16 14 C -0.54 -29.98 9.94 25.60 0.25 -29.73 16 15 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 16 C 0.02 0.89 5.47 84.66 0.46 1.35 16 17 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 18 Si 0.94 42.26 27.47 68.60 1.88 44.14 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 21 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 22 C 0.01 0.21 10.38 84.85 0.88 1.09 16 23 N -0.46 -17.33 9.78 -183.34 -1.79 -19.12 16 24 H 0.07 1.15 7.82 -2.39 -0.02 1.13 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.06 1.74 7.80 -2.39 -0.02 1.72 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.39 5.34 8.29 -74.05 -0.61 4.73 16 30 H 0.17 3.20 6.72 -2.92 -0.02 3.18 16 31 H 0.15 3.73 6.27 -2.91 -0.02 3.71 16 32 H 0.07 2.19 8.07 -2.38 -0.02 2.17 16 33 H 0.08 2.20 6.25 -2.39 -0.01 2.19 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.04 1.76 7.13 -2.39 -0.02 1.74 16 38 H 0.03 1.27 5.65 -2.39 -0.01 1.26 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.13 6.06 6.16 -2.91 -0.02 6.04 16 Total: -1.00 -67.76 325.82 2.28 -65.47 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.36 Total: 22.52 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 5.10 Total: -16.74 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -3.31 Total: -102.49 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -1.75 Total: -12.91 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.14 kcal Total: -67.76 2.28 -65.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131999598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.866 kcal (2) G-P(sol) polarization free energy of solvation -67.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds