Wall clock time and date at job start Mon Mar 30 2020 06:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47236 * 2 1 4 4 H 1.09000 * 109.47003 * 54.99684 * 3 2 1 5 5 O 1.42901 * 109.46814 * 295.00041 * 3 2 1 6 6 C 1.50692 * 109.47331 * 175.00041 * 3 2 1 7 7 C 1.38280 * 119.53572 * 124.72999 * 6 3 2 8 8 C 1.38496 * 119.24074 * 179.70987 * 7 6 3 9 9 C 1.39312 * 118.35746 * 0.55016 * 8 7 6 10 10 N 1.39706 * 120.49154 * 179.75740 * 9 8 7 11 11 C 1.46499 * 120.00153 * 354.23663 * 10 9 8 12 12 C 1.46503 * 119.99849 * 174.24307 * 10 9 8 13 13 H 1.08998 * 109.47369 * 4.72791 * 12 10 9 14 14 C 1.52995 * 109.47027 * 244.72823 * 12 10 9 15 15 C 1.50700 * 109.47094 * 124.72618 * 12 10 9 16 16 H 1.07997 * 120.00242 * 0.02562 * 15 12 10 17 17 C 1.37875 * 119.99971 * 179.97438 * 15 12 10 18 18 N 1.31513 * 120.00427 * 359.97438 * 17 15 12 19 19 Si 1.86809 * 119.99956 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47051 * 89.99826 * 19 17 15 21 21 H 1.48496 * 109.46982 * 209.99985 * 19 17 15 22 22 H 1.48496 * 109.46896 * 329.99529 * 19 17 15 23 23 C 1.38895 * 119.01392 * 359.73173 * 9 8 7 24 24 N 1.31814 * 120.65986 * 359.97438 * 23 9 8 25 25 H 1.09002 * 109.47530 * 60.00438 * 1 2 3 26 26 H 1.08997 * 109.47191 * 299.99536 * 1 2 3 27 27 H 1.09009 * 109.47068 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47323 * 120.00319 * 2 1 3 29 29 H 1.09003 * 109.47065 * 239.99560 * 2 1 3 30 30 H 0.96701 * 114.00587 * 300.00056 * 5 3 2 31 31 H 1.08003 * 120.37603 * 359.97438 * 7 6 3 32 32 H 1.07996 * 120.82051 * 180.25751 * 8 7 6 33 33 H 1.09002 * 109.46921 * 90.00551 * 11 10 9 34 34 H 1.08998 * 109.47162 * 209.99964 * 11 10 9 35 35 H 1.09001 * 109.47159 * 330.00568 * 11 10 9 36 36 H 1.08999 * 109.47025 * 180.02562 * 14 12 10 37 37 H 1.09010 * 109.46918 * 299.99779 * 14 12 10 38 38 H 1.08993 * 109.47443 * 59.99991 * 14 12 10 39 39 H 0.96993 * 120.00694 * 179.97438 * 18 17 15 40 40 H 1.08005 * 119.66726 * 180.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6619 2.0813 -1.2211 6 6 3.5418 1.4443 0.1238 7 6 4.3033 2.1015 -0.8251 8 6 5.6827 2.1045 -0.7020 9 6 6.2524 1.4297 0.3755 10 7 7.6394 1.3997 0.5399 11 6 8.5116 1.9711 -0.4891 12 6 8.2216 0.7966 1.7415 13 1 7.4300 0.3540 2.3460 14 6 8.9425 1.8737 2.5545 15 6 9.2050 -0.2727 1.3407 16 1 9.3792 -0.4818 0.2956 17 6 9.8831 -0.9832 2.3083 18 7 9.6722 -0.7276 3.5810 19 14 11.1027 -2.3082 1.8115 20 1 12.4521 -1.7072 1.6598 21 1 11.1442 -3.3604 2.8586 22 1 10.6810 -2.9104 0.5213 23 6 5.4208 0.7877 1.2840 24 7 4.1117 0.8147 1.1325 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.0141 1.6542 -2.0140 31 1 3.8274 2.6104 -1.6504 32 1 6.3018 2.6132 -1.4261 33 1 8.6914 3.0235 -0.2695 34 1 9.4606 1.4350 -0.4997 35 1 8.0318 1.8801 -1.4636 36 1 9.3761 1.4249 3.4482 37 1 9.7342 2.3163 1.9499 38 1 8.2313 2.6471 2.8444 39 1 10.1489 -1.2277 4.2617 40 1 5.8511 0.2617 2.1235 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132037755.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:14 Heat of formation + Delta-G solvation = -17.023467 kcal Electronic energy + Delta-G solvation = -20048.039216 eV Core-core repulsion = 17055.627484 eV Total energy + Delta-G solvation = -2992.411732 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.00512 -37.76134 -36.23496 -33.34007 -32.71380 -31.53538 -30.29873 -29.05496 -26.79901 -25.34936 -24.64280 -22.95580 -22.05893 -20.96906 -19.72035 -17.47847 -16.64650 -16.25469 -15.91941 -15.28103 -15.18790 -14.54852 -14.22764 -13.96983 -13.45894 -13.26869 -12.91980 -12.81869 -12.52299 -12.45651 -12.07216 -11.84805 -11.64499 -11.36035 -11.08926 -10.95706 -10.88484 -10.83910 -10.69673 -10.31788 -10.26523 -10.16932 -9.64739 -9.23231 -8.91123 -8.81150 -8.54833 -6.59533 -6.17362 -4.28918 1.75829 1.96199 3.19152 3.27033 3.29476 3.92985 4.29446 4.33006 4.41015 4.71322 5.06704 5.10784 5.14234 5.23485 5.41020 5.50305 5.57125 5.74783 5.78700 5.83372 5.88618 6.04090 6.05945 6.16475 6.24704 6.34841 6.35473 6.55968 6.63577 6.65517 6.79759 6.93280 7.07289 7.29922 7.55436 7.61002 7.73426 7.95055 8.15906 8.35337 8.63391 8.76676 9.38593 10.84640 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.027184 B = 0.004506 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.755078 B = 6212.563185 C = 6654.686630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.174 3.826 4 H 0.106 0.894 5 O -0.559 6.559 6 C -0.009 4.009 7 C -0.112 4.112 8 C -0.183 4.183 9 C 0.192 3.808 10 N -0.596 5.596 11 C 0.096 3.904 12 C 0.263 3.737 13 H 0.053 0.947 14 C -0.149 4.149 15 C -0.530 4.530 16 H 0.061 0.939 17 C 0.067 3.933 18 N -0.887 5.887 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.274 1.274 23 C 0.026 3.974 24 N -0.435 5.435 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.373 0.627 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.030 0.970 38 H 0.012 0.988 39 H 0.265 0.735 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.984 3.928 -7.793 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 C 0.114 3.886 4 H 0.123 0.877 5 O -0.364 6.364 6 C -0.148 4.148 7 C -0.132 4.132 8 C -0.214 4.214 9 C 0.081 3.919 10 N -0.300 5.300 11 C -0.048 4.048 12 C 0.163 3.837 13 H 0.070 0.930 14 C -0.208 4.208 15 C -0.569 4.569 16 H 0.079 0.921 17 C -0.136 4.136 18 N -0.525 5.525 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.140 4.140 24 N -0.144 5.144 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.220 0.780 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.049 0.951 38 H 0.031 0.969 39 H 0.075 0.925 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.511 3.839 -6.560 12.971 hybrid contribution 1.805 -0.649 -1.181 2.253 sum -8.706 3.190 -7.741 12.079 Atomic orbital electron populations 1.21725 0.95575 1.01175 1.02009 1.22140 0.96011 0.96800 1.03463 1.20361 0.88221 0.93060 0.86918 0.87675 1.86553 1.76378 1.57649 1.15777 1.21335 0.96573 1.02110 0.94768 1.21455 0.93390 0.98849 0.99500 1.20988 0.94876 1.05365 1.00164 1.19087 0.85906 0.92858 0.94078 1.47300 1.00533 1.59950 1.22185 1.21503 0.95839 0.97344 0.90103 1.18991 0.93490 0.90567 0.80648 0.92992 1.22128 0.98752 0.97288 1.02611 1.21329 1.23761 1.18425 0.93356 0.92067 1.24890 0.96794 0.97116 0.94811 1.69853 1.42148 1.40983 0.99504 0.86483 0.81196 0.81309 0.78391 1.20563 1.20995 1.19887 1.22542 0.87810 1.02503 1.01112 1.67121 1.12038 1.15014 1.20265 0.92431 0.92819 0.93067 0.89867 0.92126 0.78002 0.85501 0.85650 0.94486 0.90187 0.93143 0.88771 0.95083 0.96924 0.92503 0.82159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.81 37.16 0.36 -1.14 16 2 C -0.15 -1.76 5.53 -26.73 -0.15 -1.91 16 3 C 0.17 2.30 3.45 -27.89 -0.10 2.20 16 4 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 5 O -0.56 -6.58 11.75 -35.23 -0.41 -7.00 16 6 C -0.01 -0.14 6.17 -82.57 -0.51 -0.65 16 7 C -0.11 -1.68 9.23 -39.47 -0.36 -2.05 16 8 C -0.18 -3.03 9.26 -39.09 -0.36 -3.39 16 9 C 0.19 3.72 6.55 -83.63 -0.55 3.17 16 10 N -0.60 -12.15 2.89 -173.19 -0.50 -12.65 16 11 C 0.10 1.66 9.26 59.85 0.55 2.22 16 12 C 0.26 6.19 2.59 -69.08 -0.18 6.01 16 13 H 0.05 1.31 5.34 -51.93 -0.28 1.04 16 14 C -0.15 -3.42 9.04 37.16 0.34 -3.08 16 15 C -0.53 -13.52 7.96 -34.44 -0.27 -13.80 16 16 H 0.06 1.57 7.00 -52.49 -0.37 1.20 16 17 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -23.73 11.32 55.43 0.63 -23.10 16 19 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C 0.03 0.51 10.49 -17.32 -0.18 0.33 16 24 N -0.44 -8.08 9.77 -9.30 -0.09 -8.17 16 25 H 0.06 0.57 7.82 -51.93 -0.41 0.16 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.08 1.13 7.80 -51.93 -0.40 0.72 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.37 3.26 8.28 45.56 0.38 3.64 16 31 H 0.13 1.56 6.71 -52.48 -0.35 1.20 16 32 H 0.13 1.82 6.44 -52.49 -0.34 1.48 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.47 6.67 -51.93 -0.35 1.12 16 35 H 0.05 0.76 6.50 -51.93 -0.34 0.42 16 36 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 37 H 0.03 0.68 7.79 -51.92 -0.40 0.27 16 38 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.16 3.38 5.76 -52.48 -0.30 3.08 16 LS Contribution 320.56 15.07 4.83 4.83 Total: -1.00 -27.44 320.56 -7.22 -34.66 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.15 Total: 6.65 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -1.50 Total: -10.46 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.04 Total: -43.92 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.41 Total: -7.00 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.44 -7.22 -34.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132037755.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.633 kcal (2) G-P(sol) polarization free energy of solvation -27.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds