Wall clock time and date at job start Mon Mar 30 2020 07:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47561 * 2 1 4 4 N 1.46493 * 109.47300 * 179.97438 * 3 2 1 5 5 C 1.38631 * 119.99820 * 180.02562 * 4 3 2 6 6 C 1.39168 * 120.48808 * 0.30323 * 5 4 3 7 7 C 1.39129 * 118.27004 * 180.24065 * 6 5 4 8 8 N 1.38633 * 120.48693 * 179.73481 * 7 6 5 9 9 C 1.46501 * 120.00067 * 188.93618 * 8 7 6 10 10 C 1.46497 * 119.99816 * 8.93402 * 8 7 6 11 11 H 1.09005 * 109.47402 * 5.75822 * 10 8 7 12 12 C 1.53004 * 109.47404 * 245.75999 * 10 8 7 13 13 C 1.50702 * 109.46975 * 125.75696 * 10 8 7 14 14 H 1.07994 * 119.99904 * 5.79196 * 13 10 8 15 15 C 1.37881 * 120.00069 * 185.79041 * 13 10 8 16 16 N 1.31511 * 120.00038 * 195.45674 * 15 13 10 17 17 Si 1.86807 * 120.00096 * 15.45524 * 15 13 10 18 18 H 1.48497 * 109.47089 * 180.02562 * 17 15 13 19 19 H 1.48510 * 109.46982 * 300.00243 * 17 15 13 20 20 H 1.48501 * 109.47009 * 60.00052 * 17 15 13 21 21 N 1.33201 * 119.02667 * 359.46137 * 7 6 5 22 22 C 1.31727 * 120.88366 * 0.27312 * 21 7 6 23 23 N 1.31754 * 121.91115 * 0.02562 * 22 21 7 24 24 H 1.08995 * 109.47383 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47376 * 300.00254 * 1 2 3 26 26 H 1.09004 * 109.46838 * 60.00136 * 1 2 3 27 27 H 1.08999 * 109.47376 * 239.99746 * 2 1 3 28 28 H 1.09004 * 109.46838 * 119.99863 * 2 1 3 29 29 H 1.09009 * 109.47034 * 59.99524 * 3 2 1 30 30 H 1.09001 * 109.47227 * 300.00233 * 3 2 1 31 31 H 0.96998 * 119.99975 * 359.97438 * 4 3 2 32 32 H 1.08004 * 120.86762 * 359.97438 * 6 5 4 33 33 H 1.08997 * 109.47270 * 269.99810 * 9 8 7 34 34 H 1.08998 * 109.47143 * 29.99943 * 9 8 7 35 35 H 1.09000 * 109.46827 * 149.99946 * 9 8 7 36 36 H 1.09004 * 109.46977 * 303.46477 * 12 10 8 37 37 H 1.08994 * 109.47150 * 63.46238 * 12 10 8 38 38 H 1.09000 * 109.47216 * 183.47119 * 12 10 8 39 39 H 0.97000 * 119.99855 * 354.92264 * 16 15 13 40 40 H 1.07997 * 119.04438 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1982 2.6429 0.0013 6 6 3.5127 3.8540 0.0077 7 6 4.2544 5.0311 0.0029 8 7 3.6187 6.2631 0.0034 9 6 4.3957 7.4885 -0.1986 10 6 2.1698 6.3395 0.2060 11 1 1.7826 5.3476 0.4392 12 6 1.5033 6.8603 -1.0690 13 6 1.8710 7.2766 1.3478 14 1 2.6701 7.8377 1.8091 15 6 0.5773 7.4177 1.8034 16 7 0.2588 8.4345 2.5743 17 14 -0.7231 6.1645 1.3257 18 1 -2.0219 6.5404 1.9396 19 1 -0.8643 6.1365 -0.1524 20 1 -0.3168 4.8206 1.8097 21 7 5.5843 4.9570 0.0034 22 6 6.1965 3.7906 0.0029 23 7 5.5299 2.6542 0.0015 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9900 0.6023 0.0013 32 1 2.4329 3.8796 0.0118 33 1 4.7343 7.8672 0.7657 34 1 5.2594 7.2715 -0.8272 35 1 3.7717 8.2384 -0.6847 36 1 1.9345 7.8250 -1.3364 37 1 1.6676 6.1514 -1.8804 38 1 0.4329 6.9756 -0.8984 39 1 0.9477 9.0438 2.8826 40 1 7.2762 3.7651 0.0038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133231658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:08 Heat of formation + Delta-G solvation = 51.943726 kcal Electronic energy + Delta-G solvation = -20362.045357 eV Core-core repulsion = 17404.917018 eV Total energy + Delta-G solvation = -2957.128339 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.165 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.30915 -37.28637 -36.53673 -33.70304 -32.93727 -31.43912 -29.98266 -29.80047 -26.33840 -25.51398 -24.85279 -23.58965 -21.82389 -21.48566 -19.82289 -17.71280 -17.42896 -16.94846 -15.66695 -15.32075 -15.03678 -14.68892 -14.59968 -14.01507 -13.84755 -13.55765 -13.25468 -12.95076 -12.80704 -12.64871 -12.09320 -12.04543 -11.80486 -11.46838 -11.27904 -11.25498 -11.24132 -10.63117 -10.59691 -10.25325 -9.85624 -9.82930 -9.71803 -9.03856 -8.63187 -8.40321 -7.87328 -7.13000 -6.53403 -4.23336 1.81641 2.18912 3.23061 3.24359 3.29481 3.45599 3.74164 4.33808 4.57971 4.68565 4.81466 4.84871 5.03499 5.11071 5.26839 5.46573 5.47514 5.52523 5.61783 5.82377 5.92957 5.96268 5.98345 6.05003 6.06822 6.19255 6.29655 6.38236 6.45263 6.54282 6.60398 6.79130 7.02703 7.16111 7.47811 7.69273 7.78586 8.17676 8.21454 8.30298 8.77264 8.98876 9.46294 10.79897 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.013285 B = 0.008095 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.185111 B = 3458.084672 C = 5174.095182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.124 3.876 4 N -0.721 5.721 5 C 0.453 3.547 6 C -0.363 4.363 7 C 0.465 3.535 8 N -0.567 5.567 9 C 0.113 3.887 10 C 0.245 3.755 11 H 0.042 0.958 12 C -0.166 4.166 13 C -0.610 4.610 14 H 0.064 0.936 15 C 0.035 3.965 16 N -0.899 5.899 17 Si 1.038 2.962 18 H -0.281 1.281 19 H -0.270 1.270 20 H -0.280 1.280 21 N -0.617 5.617 22 C 0.365 3.635 23 N -0.630 5.630 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.402 0.598 32 H 0.135 0.865 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.027 0.973 38 H 0.067 0.933 39 H 0.269 0.731 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 -13.422 -6.940 15.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C -0.001 4.001 4 N -0.354 5.354 5 C 0.214 3.786 6 C -0.397 4.397 7 C 0.223 3.777 8 N -0.274 5.274 9 C -0.031 4.031 10 C 0.142 3.858 11 H 0.060 0.940 12 C -0.225 4.225 13 C -0.648 4.648 14 H 0.082 0.918 15 C -0.171 4.171 16 N -0.533 5.533 17 Si 0.866 3.134 18 H -0.207 1.207 19 H -0.196 1.196 20 H -0.207 1.207 21 N -0.346 5.346 22 C 0.073 3.927 23 N -0.360 5.360 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.237 0.763 32 H 0.152 0.848 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.906 -13.485 -6.792 15.218 hybrid contribution 0.995 0.187 0.038 1.014 sum 2.902 -13.298 -6.753 15.194 Atomic orbital electron populations 1.21694 0.94471 1.02065 1.02666 1.21686 0.96910 0.95796 1.02658 1.21467 0.79063 0.97420 1.02151 1.44269 1.05290 1.05083 1.80801 1.18082 0.88107 0.85839 0.86534 1.21297 1.01530 0.91149 1.25697 1.18325 0.87832 0.86398 0.85129 1.46820 1.08186 1.01801 1.70610 1.21320 0.94950 0.86384 1.00421 1.19279 0.74585 0.97661 0.94227 0.94036 1.22597 1.01798 1.00258 0.97811 1.22201 0.96449 1.27972 1.18222 0.91829 1.25691 0.98327 0.97972 0.95139 1.70844 1.36038 1.11904 1.34498 0.84178 0.76521 0.75910 0.76828 1.20691 1.19633 1.20650 1.67969 1.08862 1.29921 1.27888 1.24127 0.99613 0.81511 0.87424 1.67828 1.06582 1.32285 1.29332 0.92248 0.92087 0.92236 0.91382 0.91300 0.91580 0.91789 0.76323 0.84767 0.93797 0.92110 0.91712 0.93066 0.95382 0.91411 0.92027 0.79794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.13 -1.17 6.05 -26.73 -0.16 -1.33 16 3 C 0.12 1.49 4.92 -4.05 -0.02 1.47 16 4 N -0.72 -9.92 5.71 -60.33 -0.34 -10.26 16 5 C 0.45 7.93 7.70 -154.70 -1.19 6.74 16 6 C -0.36 -7.10 8.54 -38.91 -0.33 -7.43 16 7 C 0.46 9.76 7.35 -154.69 -1.14 8.62 16 8 N -0.57 -12.36 2.86 -175.30 -0.50 -12.86 16 9 C 0.11 2.22 9.37 59.85 0.56 2.78 16 10 C 0.24 5.66 2.09 -69.08 -0.14 5.52 16 11 H 0.04 0.97 4.20 -51.93 -0.22 0.75 16 12 C -0.17 -3.49 8.99 37.16 0.33 -3.16 16 13 C -0.61 -16.46 8.64 -34.44 -0.30 -16.75 16 14 H 0.06 1.88 7.44 -52.49 -0.39 1.49 16 15 C 0.03 0.96 5.34 -17.82 -0.10 0.87 16 16 N -0.90 -26.62 13.70 55.43 0.76 -25.86 16 17 Si 1.04 23.57 26.28 -169.99 -4.47 19.11 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.27 -5.53 5.58 56.52 0.32 -5.22 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 N -0.62 -12.04 9.38 -13.88 -0.13 -12.17 16 22 C 0.37 6.18 12.28 -92.25 -1.13 5.05 16 23 N -0.63 -10.95 10.47 -13.88 -0.15 -11.10 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.88 7.96 -51.92 -0.41 0.47 16 30 H 0.06 0.79 7.98 -51.93 -0.41 0.37 16 31 H 0.40 4.77 8.60 -40.82 -0.35 4.42 16 32 H 0.13 2.61 4.82 -52.48 -0.25 2.36 16 33 H 0.04 0.90 7.97 -51.93 -0.41 0.48 16 34 H 0.06 1.09 7.56 -51.93 -0.39 0.70 16 35 H 0.06 1.24 6.69 -51.93 -0.35 0.89 16 36 H 0.05 1.05 6.80 -51.93 -0.35 0.70 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 1.45 4.65 -51.93 -0.24 1.21 16 39 H 0.27 8.00 8.73 -40.82 -0.36 7.64 16 40 H 0.19 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 319.67 15.07 4.82 4.82 Total: -1.00 -30.57 319.67 -9.25 -39.81 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.99 Total: 7.03 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -3.25 Total: 1.48 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -0.36 Total: -72.25 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.47 Total: 19.11 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.57 -9.25 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133231658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.757 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds