Wall clock time and date at job start Mon Mar 30 2020 06:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47095 * 2 1 4 4 O 1.42896 * 109.47202 * 119.99881 * 2 1 3 5 5 C 1.35895 * 116.99995 * 155.07944 * 4 2 1 6 6 C 1.38679 * 119.97951 * 5.43874 * 5 4 2 7 7 C 1.38857 * 120.01740 * 180.02562 * 6 5 4 8 8 N 1.39656 * 120.00934 * 180.02562 * 7 6 5 9 9 C 1.38836 * 119.98090 * 359.97438 * 7 6 5 10 10 C 1.38791 * 119.96117 * 0.02562 * 9 7 6 11 11 N 1.39669 * 120.00743 * 180.02562 * 10 9 7 12 12 C 1.46498 * 119.99706 * 179.97438 * 11 10 9 13 13 C 1.46495 * 119.99946 * 359.97438 * 11 10 9 14 14 C 1.50705 * 109.46822 * 90.00538 * 13 11 10 15 15 H 1.07997 * 119.99949 * 359.97438 * 14 13 11 16 16 C 1.37878 * 119.99906 * 180.02562 * 14 13 11 17 17 N 1.31510 * 120.00144 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99733 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47594 * 59.99792 * 18 16 14 20 20 H 1.48505 * 109.46967 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47090 * 299.99233 * 18 16 14 22 22 C 1.38630 * 119.98268 * 185.45682 * 5 4 2 23 23 H 1.08994 * 109.47218 * 300.00202 * 1 2 3 24 24 H 1.09009 * 109.47120 * 60.00115 * 1 2 3 25 25 H 1.09002 * 109.47167 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47130 * 240.00188 * 2 1 3 27 27 H 1.09002 * 109.47011 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47062 * 300.00195 * 3 2 1 29 29 H 1.09001 * 109.46978 * 60.00095 * 3 2 1 30 30 H 1.07997 * 119.99572 * 0.03413 * 6 5 4 31 31 H 0.97001 * 120.00185 * 179.97438 * 8 7 6 32 32 H 0.97002 * 120.00601 * 359.96623 * 8 7 6 33 33 H 1.08001 * 120.02103 * 180.02562 * 9 7 6 34 34 H 1.08998 * 109.47638 * 90.00163 * 12 11 10 35 35 H 1.09003 * 109.46743 * 210.00058 * 12 11 10 36 36 H 1.09001 * 109.47220 * 329.99748 * 12 11 10 37 37 H 1.09003 * 109.47469 * 209.99988 * 13 11 10 38 38 H 1.09002 * 109.47579 * 330.00300 * 13 11 10 39 39 H 0.97006 * 119.99933 * 180.02562 * 17 16 14 40 40 H 1.08000 * 119.99216 * 0.25813 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.2472 -1.2232 1.0984 6 6 4.0343 -1.0199 -0.0252 7 6 5.3022 -1.5816 -0.0961 8 7 6.0948 -1.3763 -1.2274 9 6 5.7821 -2.3465 0.9585 10 6 4.9937 -2.5495 2.0826 11 7 5.4757 -3.3184 3.1443 12 6 4.6436 -3.5320 4.3309 13 6 6.8134 -3.9112 3.0712 14 6 7.8217 -2.9474 3.6419 15 1 7.4985 -1.9891 4.0206 16 6 9.1571 -3.2888 3.6794 17 7 9.5507 -4.4556 3.2177 18 14 10.4069 -2.0939 4.3861 19 1 10.0703 -1.8060 5.8034 20 1 11.7631 -2.6943 4.3110 21 1 10.3814 -0.8313 3.6049 22 6 3.7255 -1.9872 2.1517 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.6611 -0.4244 -0.8452 31 1 6.9807 -1.7684 -1.2767 32 1 5.7595 -0.8416 -1.9641 33 1 6.7683 -2.7834 0.9042 34 1 4.0396 -4.4290 4.1945 35 1 5.2826 -3.6537 5.2056 36 1 3.9895 -2.6721 4.4756 37 1 6.8319 -4.8381 3.6445 38 1 7.0609 -4.1224 2.0309 39 1 10.4902 -4.6959 3.2445 40 1 3.1102 -2.1488 3.0244 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133969852.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:27 Heat of formation + Delta-G solvation = -12.685587 kcal Electronic energy + Delta-G solvation = -20055.036147 eV Core-core repulsion = 17062.812519 eV Total energy + Delta-G solvation = -2992.223627 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.81669 -37.97186 -35.85076 -33.73863 -32.76400 -31.93055 -28.98410 -28.55043 -27.25949 -27.01349 -24.90185 -23.16937 -21.58773 -21.15828 -19.55131 -17.73987 -16.62456 -16.36896 -15.53352 -15.31811 -15.02070 -14.93077 -14.73432 -14.07455 -13.77093 -13.50468 -13.26956 -12.82772 -12.56602 -12.33317 -12.08364 -11.95654 -11.85952 -11.54115 -11.34774 -11.08914 -11.01717 -10.85945 -10.74025 -10.46410 -10.31151 -10.14150 -9.89017 -9.41646 -8.46731 -8.24605 -6.94290 -6.46359 -5.99365 -4.12998 2.37118 2.47596 3.30254 3.34133 3.38004 3.48207 4.18510 4.38408 4.51176 4.67551 4.81758 4.94402 5.10024 5.25184 5.44621 5.53931 5.66970 5.71821 5.74045 5.89477 5.92554 6.04285 6.13030 6.16730 6.19122 6.26101 6.38838 6.42838 6.75863 7.02757 7.08779 7.18248 7.33000 7.40987 7.79702 7.85539 8.10589 8.21005 8.27143 8.36989 8.57814 8.96259 9.53229 10.99311 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.004800 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.180050 B = 5832.503352 C = 6231.331405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.079 3.921 3 C -0.179 4.179 4 O -0.315 6.315 5 C 0.204 3.796 6 C -0.354 4.354 7 C 0.281 3.719 8 N -0.880 5.880 9 C -0.292 4.292 10 C 0.307 3.693 11 N -0.610 5.610 12 C 0.097 3.903 13 C 0.250 3.750 14 C -0.528 4.528 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.897 5.897 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.295 4.295 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.397 0.603 32 H 0.390 0.610 33 H 0.131 0.869 34 H 0.036 0.964 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.030 0.970 38 H 0.037 0.963 39 H 0.264 0.736 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.325 7.143 -7.734 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.023 3.977 3 C -0.236 4.236 4 O -0.229 6.229 5 C 0.157 3.843 6 C -0.378 4.378 7 C 0.176 3.824 8 N -0.418 5.418 9 C -0.319 4.319 10 C 0.197 3.803 11 N -0.315 5.315 12 C -0.047 4.047 13 C 0.130 3.870 14 C -0.567 4.567 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.536 5.536 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.320 4.320 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.131 0.869 31 H 0.226 0.774 32 H 0.217 0.783 33 H 0.149 0.851 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.240 6.870 -7.353 16.630 hybrid contribution 1.182 0.805 -0.088 1.432 sum -12.058 7.674 -7.442 16.115 Atomic orbital electron populations 1.21845 0.93215 1.02887 1.02545 1.22282 0.94631 0.92566 0.88254 1.22371 1.02689 0.96202 1.02362 1.86055 1.30395 1.68340 1.38109 1.18164 0.82684 0.90318 0.93094 1.20091 0.97394 1.18420 1.01937 1.17110 0.88891 0.90357 0.86078 1.42419 1.19660 1.60867 1.18881 1.20093 1.03345 1.13263 0.95217 1.17158 0.89867 0.86447 0.86809 1.47057 1.17544 1.52251 1.14651 1.21498 0.94877 0.99604 0.88703 1.19282 0.76453 0.93193 0.98056 1.21564 0.91796 1.02791 1.40589 0.92263 1.24946 0.98330 0.95350 0.95432 1.69926 1.16528 1.20693 1.46428 0.86593 0.80154 0.81216 0.79691 1.20230 1.21255 1.20186 1.19474 0.98216 1.12835 1.01498 0.91716 0.91021 0.91805 0.90968 0.91427 0.91701 0.91788 0.86937 0.77443 0.78328 0.85147 0.94540 0.91495 0.92404 0.95198 0.94526 0.92679 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.56 37.15 0.36 -1.02 16 2 C 0.08 0.95 2.84 -26.73 -0.08 0.87 16 3 C -0.18 -1.92 9.17 37.16 0.34 -1.58 16 4 O -0.32 -5.04 9.80 -19.41 -0.19 -5.23 16 5 C 0.20 3.66 6.59 -39.27 -0.26 3.40 16 6 C -0.35 -5.96 8.08 -39.19 -0.32 -6.28 16 7 C 0.28 5.05 6.75 -83.84 -0.57 4.49 16 8 N -0.88 -12.43 9.09 32.38 0.29 -12.13 16 9 C -0.29 -6.16 9.05 -39.16 -0.35 -6.51 16 10 C 0.31 6.59 6.55 -83.84 -0.55 6.04 16 11 N -0.61 -13.56 2.99 -181.04 -0.54 -14.10 16 12 C 0.10 1.79 10.18 59.85 0.61 2.40 16 13 C 0.25 6.38 4.91 -5.19 -0.03 6.35 16 14 C -0.53 -14.60 9.39 -34.44 -0.32 -14.93 16 15 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 18 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.30 -5.78 9.14 -39.19 -0.36 -6.14 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.85 6.31 -51.93 -0.33 0.52 16 27 H 0.07 0.82 6.90 -51.93 -0.36 0.46 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.11 1.61 5.41 -52.49 -0.28 1.33 16 31 H 0.40 5.37 8.84 -40.82 -0.36 5.01 16 32 H 0.39 4.37 8.84 -40.82 -0.36 4.01 16 33 H 0.13 3.01 6.13 -52.49 -0.32 2.68 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 36 H 0.06 0.97 6.19 -51.93 -0.32 0.65 16 37 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 38 H 0.04 0.99 6.19 -51.93 -0.32 0.66 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.12 2.18 6.13 -52.49 -0.32 1.86 16 LS Contribution 325.76 15.07 4.91 4.91 Total: -1.00 -30.35 325.76 -7.33 -37.68 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.90 Total: 8.77 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -1.62 Total: -11.31 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.49 Total: -51.28 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.19 Total: -5.23 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.35 -7.33 -37.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133969852.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.993 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds