Wall clock time and date at job start Mon Mar 30 2020 07:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47113 * 2 1 4 4 N 1.46493 * 109.47315 * 239.99933 * 2 1 3 5 5 C 1.46503 * 120.00186 * 55.26659 * 4 2 1 6 6 C 1.50697 * 109.47257 * 89.99650 * 5 4 2 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99947 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00518 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99894 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47216 * 59.99976 * 10 8 6 12 12 H 1.48500 * 109.46800 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47107 * 299.99678 * 10 8 6 14 14 C 1.39710 * 120.00338 * 235.26378 * 4 2 1 15 15 C 1.39312 * 120.49384 * 185.42262 * 14 4 2 16 16 C 1.38493 * 118.35861 * 179.71553 * 15 14 4 17 17 C 1.38277 * 119.23699 * 0.58415 * 16 15 14 18 18 C 1.50699 * 119.53317 * 179.70295 * 17 16 15 19 19 H 1.09002 * 109.47115 * 244.97387 * 18 17 16 20 20 C 1.53004 * 109.47241 * 124.97414 * 18 17 16 21 21 O 1.42902 * 109.47333 * 4.97328 * 18 17 16 22 22 N 1.31851 * 120.92895 * 359.67461 * 17 16 15 23 23 C 1.31811 * 121.80199 * 0.02613 * 22 17 16 24 24 H 1.08998 * 109.46866 * 59.99895 * 1 2 3 25 25 H 1.08999 * 109.46933 * 300.00253 * 1 2 3 26 26 H 1.08992 * 109.47174 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47322 * 119.99828 * 2 1 3 28 28 H 1.09002 * 109.47172 * 60.00497 * 3 2 1 29 29 H 1.09006 * 109.46985 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47340 * 299.99814 * 3 2 1 31 31 H 1.08997 * 109.47443 * 210.00181 * 5 4 2 32 32 H 1.09001 * 109.46833 * 329.99958 * 5 4 2 33 33 H 0.96997 * 120.00654 * 179.97438 * 9 8 6 34 34 H 1.07998 * 120.82149 * 359.97438 * 15 14 4 35 35 H 1.07993 * 120.38458 * 180.26277 * 16 15 14 36 36 H 1.09004 * 109.46896 * 59.99788 * 20 18 17 37 37 H 1.09004 * 109.47115 * 179.97438 * 20 18 17 38 38 H 1.09002 * 109.47044 * 300.00016 * 20 18 17 39 39 H 0.96698 * 113.99960 * 60.00216 * 21 18 17 40 40 H 1.08002 * 119.67282 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 1.5810 -0.2534 -2.5242 6 6 2.5318 0.7922 -3.0473 7 1 3.3776 1.1001 -2.4503 8 6 2.3221 1.3558 -4.2880 9 7 1.2920 0.9814 -5.0148 10 14 3.5011 2.6515 -4.9366 11 1 4.8666 2.0756 -5.0305 12 1 3.0570 3.0955 -6.2823 13 1 3.5165 3.8138 -4.0126 14 6 2.9012 -1.7661 -1.0703 15 6 3.4598 -2.3581 -2.2009 16 6 4.3342 -3.4175 -2.0248 17 6 4.6126 -3.8576 -0.7438 18 6 5.5578 -5.0142 -0.5447 19 1 5.0159 -5.8565 -0.1147 20 6 6.6841 -4.5953 0.4024 21 8 6.1129 -5.3981 -1.8044 22 7 4.0631 -3.2791 0.3059 23 6 3.2305 -2.2646 0.1835 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.5704 -1.1067 -3.2024 32 1 0.5785 0.1688 -2.4559 33 1 1.1442 1.3782 -5.8874 34 1 3.2202 -1.9970 -3.1902 35 1 4.7893 -3.8978 -2.8782 36 1 6.2607 -4.3025 1.3633 37 1 7.3676 -5.4321 0.5468 38 1 7.2261 -3.7530 -0.0276 39 1 6.6102 -4.6959 -2.2454 40 1 2.7998 -1.8168 1.0669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149626526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:01 Heat of formation + Delta-G solvation = -18.837293 kcal Electronic energy + Delta-G solvation = -20374.987839 eV Core-core repulsion = 17382.497453 eV Total energy + Delta-G solvation = -2992.490385 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.96821 -37.77266 -36.41550 -33.10166 -32.56525 -31.14074 -30.64638 -28.76069 -26.78194 -26.57397 -23.96799 -23.14770 -22.25615 -20.90589 -19.25542 -17.56944 -16.58216 -16.47623 -16.04144 -15.01746 -14.85696 -14.61171 -14.15221 -13.84150 -13.61306 -13.18550 -12.97838 -12.62725 -12.46144 -12.38952 -12.13687 -11.80239 -11.60039 -11.51033 -11.25181 -11.08692 -10.90918 -10.87381 -10.58869 -10.40949 -10.31997 -10.04225 -9.83479 -9.29098 -8.88018 -8.81318 -8.56715 -6.64195 -6.11597 -4.24045 1.81501 2.05011 3.21979 3.27543 3.29949 3.86995 4.31916 4.38116 4.44849 4.74121 5.12261 5.14548 5.29103 5.37060 5.39860 5.53481 5.59087 5.66559 5.71052 5.86513 5.99508 6.01136 6.08093 6.19140 6.22356 6.24683 6.28058 6.35862 6.58159 6.70119 6.83346 6.91260 7.01212 7.21861 7.24609 7.66109 7.73066 8.04601 8.12124 8.27200 8.60293 8.83759 9.42319 10.88548 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.006099 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.514552 B = 4589.780522 C = 5554.116618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 C -0.158 4.158 4 N -0.596 5.596 5 C 0.247 3.753 6 C -0.529 4.529 7 H 0.060 0.940 8 C 0.063 3.937 9 N -0.894 5.894 10 Si 0.894 3.106 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.197 3.803 15 C -0.149 4.149 16 C -0.113 4.113 17 C -0.006 4.006 18 C 0.170 3.830 19 H 0.104 0.896 20 C -0.172 4.172 21 O -0.562 6.562 22 N -0.440 5.440 23 C -0.003 4.003 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.265 0.735 34 H 0.144 0.856 35 H 0.129 0.871 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.375 0.625 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.943 -5.493 8.677 11.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 C -0.216 4.216 4 N -0.300 5.300 5 C 0.128 3.872 6 C -0.568 4.568 7 H 0.078 0.922 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.086 3.914 15 C -0.179 4.179 16 C -0.134 4.134 17 C -0.147 4.147 18 C 0.110 3.890 19 H 0.122 0.878 20 C -0.229 4.229 21 O -0.367 6.367 22 N -0.149 5.149 23 C -0.167 4.167 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.161 0.839 35 H 0.147 0.853 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.223 0.777 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.595 -6.141 9.428 11.812 hybrid contribution 0.572 1.835 -1.503 2.440 sum 4.167 -4.306 7.925 9.935 Atomic orbital electron populations 1.22162 0.95685 1.01788 1.02323 1.20904 0.93769 0.93423 0.87953 1.22183 1.01210 0.96078 1.02162 1.47311 1.45244 1.29722 1.07721 1.19304 0.95658 0.95187 0.77081 1.21514 1.11295 1.22059 1.01931 0.92166 1.24947 0.95457 0.96946 0.96610 1.69909 1.28217 1.43062 1.12064 0.86622 0.81320 0.81864 0.78055 1.20188 1.21197 1.20220 1.18988 0.89733 0.88162 0.94482 1.21328 0.99434 0.97866 0.99279 1.21569 0.97803 0.96253 0.97780 1.21283 1.03194 1.00715 0.89465 1.20289 0.91238 0.94065 0.83401 0.87786 1.22374 0.98426 1.01185 1.00961 1.86555 1.72722 1.42530 1.34848 1.66981 1.06745 1.07470 1.33706 1.22109 1.01719 0.97559 0.95265 0.91346 0.92351 0.92880 0.90727 0.93337 0.92963 0.90239 0.95015 0.94474 0.92545 0.83871 0.85344 0.90726 0.92317 0.92728 0.77689 0.83664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.08 37.16 0.34 -2.10 16 2 C 0.14 2.39 3.20 -67.93 -0.22 2.17 16 3 C -0.16 -2.65 8.60 37.16 0.32 -2.33 16 4 N -0.60 -11.78 2.52 -165.42 -0.42 -12.20 16 5 C 0.25 5.78 4.38 -5.19 -0.02 5.75 16 6 C -0.53 -13.46 7.84 -34.44 -0.27 -13.73 16 7 H 0.06 1.57 7.59 -52.49 -0.40 1.17 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -24.63 13.29 55.43 0.74 -23.90 16 10 Si 0.89 20.58 29.54 -169.99 -5.02 15.55 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 C 0.20 3.82 6.55 -83.63 -0.55 3.27 16 15 C -0.15 -2.90 9.26 -39.09 -0.36 -3.26 16 16 C -0.11 -1.93 9.23 -39.47 -0.36 -2.29 16 17 C -0.01 -0.09 6.17 -82.57 -0.51 -0.60 16 18 C 0.17 2.30 4.07 -27.88 -0.11 2.18 16 19 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 20 C -0.17 -2.03 9.39 37.16 0.35 -1.68 16 21 O -0.56 -7.27 12.21 -35.23 -0.43 -7.70 16 22 N -0.44 -7.68 9.86 -9.30 -0.09 -7.78 16 23 C 0.00 -0.05 10.49 -17.32 -0.18 -0.23 16 24 H 0.07 1.16 6.52 -51.93 -0.34 0.82 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.11 5.34 -51.93 -0.28 0.83 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.54 6.92 -51.93 -0.36 1.18 16 31 H 0.03 0.80 6.49 -51.93 -0.34 0.47 16 32 H 0.04 0.91 6.19 -51.93 -0.32 0.59 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.14 3.04 6.42 -52.49 -0.34 2.70 16 35 H 0.13 1.90 6.72 -52.49 -0.35 1.54 16 36 H 0.07 0.93 7.94 -51.93 -0.41 0.51 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.38 3.79 8.29 45.56 0.38 4.17 16 40 H 0.15 2.29 5.76 -52.49 -0.30 1.99 16 LS Contribution 321.96 15.07 4.85 4.85 Total: -1.00 -27.89 321.96 -7.21 -35.10 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.15 Total: 7.36 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.68 Total: -11.30 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.23 Total: -43.87 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.43 Total: -7.70 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.89 -7.21 -35.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149626526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.262 kcal (2) G-P(sol) polarization free energy of solvation -27.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds