Wall clock time and date at job start Mon Mar 30 2020 07:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47113 * 2 1 4 4 N 1.46493 * 109.47315 * 239.99933 * 2 1 3 5 5 C 1.46503 * 120.00186 * 55.26659 * 4 2 1 6 6 C 1.50697 * 109.47257 * 89.99650 * 5 4 2 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99947 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00518 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99894 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47216 * 59.99976 * 10 8 6 12 12 H 1.48500 * 109.46800 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47107 * 299.99678 * 10 8 6 14 14 C 1.39710 * 120.00338 * 235.26378 * 4 2 1 15 15 C 1.39312 * 120.49384 * 185.42262 * 14 4 2 16 16 C 1.38493 * 118.35861 * 179.71553 * 15 14 4 17 17 C 1.38277 * 119.23699 * 0.58415 * 16 15 14 18 18 C 1.50699 * 119.53317 * 179.70295 * 17 16 15 19 19 H 1.09002 * 109.47115 * 244.97387 * 18 17 16 20 20 C 1.53004 * 109.47241 * 124.97414 * 18 17 16 21 21 O 1.42902 * 109.47333 * 4.97328 * 18 17 16 22 22 N 1.31851 * 120.92895 * 359.67461 * 17 16 15 23 23 C 1.31811 * 121.80199 * 0.02613 * 22 17 16 24 24 H 1.08998 * 109.46866 * 59.99895 * 1 2 3 25 25 H 1.08999 * 109.46933 * 300.00253 * 1 2 3 26 26 H 1.08992 * 109.47174 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47322 * 119.99828 * 2 1 3 28 28 H 1.09002 * 109.47172 * 60.00497 * 3 2 1 29 29 H 1.09006 * 109.46985 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47340 * 299.99814 * 3 2 1 31 31 H 1.08997 * 109.47443 * 210.00181 * 5 4 2 32 32 H 1.09001 * 109.46833 * 329.99958 * 5 4 2 33 33 H 0.96997 * 120.00654 * 179.97438 * 9 8 6 34 34 H 1.07998 * 120.82149 * 359.97438 * 15 14 4 35 35 H 1.07993 * 120.38458 * 180.26277 * 16 15 14 36 36 H 1.09004 * 109.46896 * 59.99788 * 20 18 17 37 37 H 1.09004 * 109.47115 * 179.97438 * 20 18 17 38 38 H 1.09002 * 109.47044 * 300.00016 * 20 18 17 39 39 H 0.96698 * 113.99960 * 60.00216 * 21 18 17 40 40 H 1.08002 * 119.67282 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 1.5810 -0.2534 -2.5242 6 6 2.5318 0.7922 -3.0473 7 1 3.3776 1.1001 -2.4503 8 6 2.3221 1.3558 -4.2880 9 7 1.2920 0.9814 -5.0148 10 14 3.5011 2.6515 -4.9366 11 1 4.8666 2.0756 -5.0305 12 1 3.0570 3.0955 -6.2823 13 1 3.5165 3.8138 -4.0126 14 6 2.9012 -1.7661 -1.0703 15 6 3.4598 -2.3581 -2.2009 16 6 4.3342 -3.4175 -2.0248 17 6 4.6126 -3.8576 -0.7438 18 6 5.5578 -5.0142 -0.5447 19 1 5.0159 -5.8565 -0.1147 20 6 6.6841 -4.5953 0.4024 21 8 6.1129 -5.3981 -1.8044 22 7 4.0631 -3.2791 0.3059 23 6 3.2305 -2.2646 0.1835 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.5704 -1.1067 -3.2024 32 1 0.5785 0.1688 -2.4559 33 1 1.1442 1.3782 -5.8874 34 1 3.2202 -1.9970 -3.1902 35 1 4.7893 -3.8978 -2.8782 36 1 6.2607 -4.3025 1.3633 37 1 7.3676 -5.4321 0.5468 38 1 7.2261 -3.7530 -0.0276 39 1 6.6102 -4.6959 -2.2454 40 1 2.7998 -1.8168 1.0669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149626526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:01 Heat of formation + Delta-G solvation = -36.276110 kcal Electronic energy + Delta-G solvation = -20375.744043 eV Core-core repulsion = 17382.497453 eV Total energy + Delta-G solvation = -2993.246589 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35658 -39.08990 -37.64914 -34.96605 -34.03642 -32.46593 -31.94202 -30.32050 -28.26160 -27.97444 -25.58766 -24.43738 -23.81877 -22.20494 -20.70300 -18.89720 -18.55987 -17.81602 -17.41295 -16.61468 -16.10319 -15.96778 -15.51302 -15.28812 -15.07799 -14.52197 -14.39130 -14.17880 -14.05196 -13.76657 -13.28552 -13.10134 -13.08110 -12.84319 -12.79296 -12.67980 -12.42935 -12.33900 -12.07138 -11.96027 -11.73396 -11.51564 -11.25871 -10.92583 -10.60801 -10.31040 -10.21143 -8.38436 -7.91766 -6.32331 0.40493 0.60170 1.37458 1.38286 1.45953 2.30211 2.47006 3.00234 3.09561 3.34113 3.57024 3.82676 4.05706 4.10974 4.20037 4.28195 4.36058 4.38894 4.42002 4.62711 4.74214 4.82494 4.88215 4.89868 4.95982 5.01151 5.11537 5.14025 5.18487 5.30535 5.37180 5.40846 5.43840 5.52287 5.68699 5.79577 6.09838 6.41841 6.74288 6.77798 6.83793 7.21305 7.37816 8.85425 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.006099 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.514552 B = 4589.780522 C = 5554.116618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.137 3.863 3 C -0.151 4.151 4 N -0.604 5.604 5 C 0.267 3.733 6 C -0.526 4.526 7 H 0.052 0.948 8 C 0.015 3.985 9 N -0.926 5.926 10 Si 0.952 3.048 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.270 1.270 14 C 0.176 3.824 15 C -0.171 4.171 16 C -0.112 4.112 17 C -0.001 4.001 18 C 0.173 3.827 19 H 0.110 0.890 20 C -0.164 4.164 21 O -0.567 6.567 22 N -0.443 5.443 23 C 0.004 3.996 24 H 0.040 0.960 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.045 0.955 31 H 0.005 0.995 32 H 0.021 0.979 33 H 0.265 0.735 34 H 0.115 0.885 35 H 0.148 0.852 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.388 0.612 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.227 -5.943 10.463 13.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 C -0.209 4.209 4 N -0.310 5.310 5 C 0.146 3.854 6 C -0.565 4.565 7 H 0.070 0.930 8 C -0.184 4.184 9 N -0.567 5.567 10 Si 0.777 3.223 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.196 1.196 14 C 0.067 3.933 15 C -0.202 4.202 16 C -0.132 4.132 17 C -0.141 4.141 18 C 0.113 3.887 19 H 0.128 0.872 20 C -0.222 4.222 21 O -0.374 6.374 22 N -0.153 5.153 23 C -0.160 4.160 24 H 0.060 0.940 25 H 0.110 0.890 26 H 0.072 0.928 27 H 0.119 0.881 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.022 0.978 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.133 0.867 35 H 0.166 0.834 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.238 0.762 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.900 -6.598 11.237 13.921 hybrid contribution 0.218 1.879 -2.025 2.771 sum 5.118 -4.719 9.212 11.546 Atomic orbital electron populations 1.22099 0.94604 1.01921 1.02582 1.21190 0.94683 0.93232 0.87455 1.22101 1.00320 0.96273 1.02191 1.47181 1.46044 1.30542 1.07195 1.18774 0.94475 0.93432 0.78751 1.21677 1.11005 1.22046 1.01794 0.93019 1.25665 0.96858 0.98861 0.96991 1.70016 1.29828 1.44400 1.12412 0.85703 0.79316 0.79680 0.77559 1.20009 1.20856 1.19556 1.19189 0.90322 0.88534 0.95259 1.21281 1.01088 0.99441 0.98340 1.21770 0.96991 0.95384 0.99064 1.21852 1.02605 1.00806 0.88860 1.20344 0.91288 0.92893 0.84136 0.87247 1.22301 0.97961 1.01906 1.00018 1.86541 1.72831 1.43236 1.34750 1.67099 1.06807 1.07421 1.33933 1.22400 1.01217 0.97260 0.95090 0.94043 0.89015 0.92811 0.88133 0.89808 0.94172 0.93600 0.97752 0.96133 0.92582 0.86658 0.83395 0.91222 0.90387 0.92802 0.76240 0.81488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 9.08 71.98 0.65 -3.85 16 2 C 0.14 4.42 3.20 44.99 0.14 4.56 16 3 C -0.15 -4.91 8.60 71.98 0.62 -4.29 16 4 N -0.60 -24.27 2.52 -677.27 -1.71 -25.98 16 5 C 0.27 13.06 4.38 85.63 0.37 13.44 16 6 C -0.53 -27.65 7.84 25.60 0.20 -27.45 16 7 H 0.05 2.76 7.59 -2.91 -0.02 2.73 16 8 C 0.02 0.83 5.46 84.65 0.46 1.29 16 9 N -0.93 -52.66 13.29 21.45 0.28 -52.37 16 10 Si 0.95 42.78 29.54 68.60 2.03 44.80 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 14 C 0.18 6.83 6.55 38.30 0.25 7.08 16 15 C -0.17 -6.82 9.26 22.59 0.21 -6.61 16 16 C -0.11 -3.72 9.23 22.34 0.21 -3.51 16 17 C 0.00 -0.02 6.17 42.56 0.26 0.25 16 18 C 0.17 4.24 4.07 29.85 0.12 4.36 16 19 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 20 C -0.16 -3.41 9.39 71.98 0.68 -2.73 16 21 O -0.57 -13.19 12.21 -148.98 -1.82 -15.01 16 22 N -0.44 -14.59 9.86 -183.35 -1.81 -16.40 16 23 C 0.00 0.13 10.49 84.85 0.89 1.02 16 24 H 0.04 1.43 6.52 -2.39 -0.02 1.41 16 25 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 27 H 0.10 2.71 5.34 -2.39 -0.01 2.70 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.04 1.79 6.92 -2.39 -0.02 1.78 16 31 H 0.00 0.24 6.49 -2.39 -0.02 0.23 16 32 H 0.02 1.07 6.19 -2.39 -0.01 1.06 16 33 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 34 H 0.12 5.21 6.42 -2.91 -0.02 5.19 16 35 H 0.15 4.21 6.72 -2.91 -0.02 4.19 16 36 H 0.07 1.53 7.94 -2.38 -0.02 1.51 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.39 6.85 8.29 -74.06 -0.61 6.23 16 40 H 0.17 4.80 5.76 -2.91 -0.02 4.78 16 Total: -1.00 -60.83 321.96 2.47 -58.36 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.43 Total: 23.03 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 5.07 Total: -16.44 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -3.23 Total: -94.75 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -1.82 Total: -15.01 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -60.83 2.47 -58.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149626526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.082 kcal (2) G-P(sol) polarization free energy of solvation -60.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds