Wall clock time and date at job start Mon Mar 30 2020 07:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47113 * 2 1 4 4 N 1.46493 * 109.47315 * 239.99933 * 2 1 3 5 5 C 1.46503 * 120.00186 * 55.26659 * 4 2 1 6 6 C 1.50697 * 109.47257 * 89.99650 * 5 4 2 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99947 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00518 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99894 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47280 * 90.00025 * 10 8 6 12 12 H 1.48506 * 109.46796 * 209.99882 * 10 8 6 13 13 H 1.48495 * 109.46913 * 329.99727 * 10 8 6 14 14 C 1.39710 * 120.00338 * 235.26378 * 4 2 1 15 15 C 1.39312 * 120.49384 * 185.42262 * 14 4 2 16 16 C 1.38499 * 118.35671 * 179.75821 * 15 14 4 17 17 C 1.38270 * 119.23814 * 0.49978 * 16 15 14 18 18 C 1.50699 * 119.53189 * 179.74571 * 17 16 15 19 19 H 1.09004 * 109.47348 * 5.01800 * 18 17 16 20 20 C 1.53004 * 109.47241 * 125.01734 * 18 17 16 21 21 O 1.42906 * 109.47034 * 245.01472 * 18 17 16 22 22 N 1.31851 * 120.93023 * 359.76120 * 17 16 15 23 23 C 1.31811 * 121.80199 * 359.97438 * 22 17 16 24 24 H 1.08998 * 109.46866 * 59.99895 * 1 2 3 25 25 H 1.08999 * 109.46933 * 300.00253 * 1 2 3 26 26 H 1.08992 * 109.47174 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47322 * 119.99828 * 2 1 3 28 28 H 1.09002 * 109.47172 * 60.00497 * 3 2 1 29 29 H 1.09006 * 109.46985 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47340 * 299.99814 * 3 2 1 31 31 H 1.08997 * 109.47443 * 210.00181 * 5 4 2 32 32 H 1.09001 * 109.46833 * 329.99958 * 5 4 2 33 33 H 0.96997 * 120.00654 * 179.97438 * 9 8 6 34 34 H 1.07998 * 120.82149 * 359.97438 * 15 14 4 35 35 H 1.07999 * 120.37683 * 180.21512 * 16 15 14 36 36 H 1.09004 * 109.46896 * 59.99788 * 20 18 17 37 37 H 1.09004 * 109.47115 * 179.97438 * 20 18 17 38 38 H 1.09002 * 109.47044 * 300.00016 * 20 18 17 39 39 H 0.96698 * 114.00081 * 300.00369 * 21 18 17 40 40 H 1.08002 * 119.67282 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 1.5810 -0.2534 -2.5242 6 6 2.5318 0.7922 -3.0473 7 1 3.3776 1.1001 -2.4503 8 6 2.3221 1.3558 -4.2880 9 7 1.2920 0.9814 -5.0148 10 14 3.5011 2.6515 -4.9366 11 1 4.5930 1.9913 -5.6963 12 1 2.7689 3.5834 -5.8315 13 1 4.0786 3.4097 -3.7979 14 6 2.9012 -1.7661 -1.0703 15 6 3.4598 -2.3581 -2.2009 16 6 4.3335 -3.4181 -2.0247 17 6 4.6126 -3.8576 -0.7438 18 6 5.5578 -5.0142 -0.5447 19 1 5.9812 -5.3070 -1.5056 20 6 6.6841 -4.5953 0.4024 21 8 4.8473 -6.1185 0.0192 22 7 4.0631 -3.2791 0.3059 23 6 3.2306 -2.2645 0.1835 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.5704 -1.1067 -3.2024 32 1 0.5785 0.1688 -2.4559 33 1 1.1442 1.3782 -5.8874 34 1 3.2202 -1.9970 -3.1902 35 1 4.7880 -3.8989 -2.8783 36 1 6.2607 -4.3025 1.3633 37 1 7.3676 -5.4321 0.5468 38 1 7.2261 -3.7530 -0.0276 39 1 4.4431 -5.9294 0.8770 40 1 2.7999 -1.8167 1.0669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149626730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:04 Heat of formation + Delta-G solvation = -20.479307 kcal Electronic energy + Delta-G solvation = -20344.445685 eV Core-core repulsion = 17351.884097 eV Total energy + Delta-G solvation = -2992.561588 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.95551 -37.69951 -36.31239 -33.09662 -32.44943 -31.57630 -30.40256 -28.77454 -26.78808 -26.58292 -24.10039 -22.97053 -22.42921 -20.75129 -19.33646 -17.45000 -16.61722 -16.48507 -16.10083 -15.01349 -14.64551 -14.53655 -14.10823 -13.88550 -13.59290 -13.18788 -13.08071 -12.66014 -12.51609 -12.40268 -12.18407 -11.81243 -11.61508 -11.51021 -11.25162 -11.10203 -10.89120 -10.85084 -10.60716 -10.37396 -10.23155 -10.01371 -9.82991 -9.30603 -8.91201 -8.84634 -8.57545 -6.66687 -6.12637 -4.24710 1.79621 2.02334 3.20463 3.27994 3.30664 3.85622 4.30200 4.33711 4.68817 4.81041 5.00727 5.13849 5.22960 5.36443 5.43480 5.51508 5.58161 5.65738 5.67110 5.88774 5.99804 6.01130 6.06320 6.11881 6.19593 6.24499 6.31620 6.35324 6.57402 6.68129 6.84378 6.90187 6.99925 7.20287 7.23802 7.72508 7.79079 8.03386 8.10896 8.25500 8.56824 8.83376 9.41784 10.87847 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019288 B = 0.005764 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.332727 B = 4856.991091 C = 5647.469206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 C -0.158 4.158 4 N -0.595 5.595 5 C 0.247 3.753 6 C -0.529 4.529 7 H 0.061 0.939 8 C 0.063 3.937 9 N -0.894 5.894 10 Si 0.893 3.107 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.199 3.801 15 C -0.151 4.151 16 C -0.107 4.107 17 C -0.005 4.005 18 C 0.171 3.829 19 H 0.102 0.898 20 C -0.175 4.175 21 O -0.564 6.564 22 N -0.440 5.440 23 C -0.003 4.003 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.144 0.856 35 H 0.124 0.876 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.378 0.622 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 -5.611 9.217 11.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 C -0.216 4.216 4 N -0.299 5.299 5 C 0.127 3.873 6 C -0.567 4.567 7 H 0.079 0.921 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.721 3.279 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.089 3.911 15 C -0.181 4.181 16 C -0.128 4.128 17 C -0.146 4.146 18 C 0.112 3.888 19 H 0.120 0.880 20 C -0.233 4.233 21 O -0.369 6.369 22 N -0.149 5.149 23 C -0.167 4.167 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.162 0.838 35 H 0.142 0.858 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.225 0.775 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.618 -5.983 9.280 11.619 hybrid contribution 0.211 1.628 -0.983 1.913 sum 3.828 -4.356 8.297 10.123 Atomic orbital electron populations 1.22162 0.95661 1.01801 1.02338 1.20908 0.93783 0.93435 0.87925 1.22183 1.01224 0.96056 1.02172 1.47327 1.45159 1.29669 1.07763 1.19316 0.95692 0.95217 0.77065 1.21550 1.11266 1.22006 1.01928 0.92095 1.24949 0.95445 0.96961 0.96624 1.69919 1.28187 1.43130 1.12010 0.86564 0.80951 0.81454 0.78913 1.20561 1.21144 1.19879 1.18979 0.89589 0.88073 0.94458 1.21332 0.99458 0.97946 0.99334 1.21631 0.97398 0.96386 0.97373 1.21252 1.03215 1.00701 0.89386 1.20486 0.88739 0.82804 0.96807 0.88021 1.22401 0.98647 1.01369 1.00841 1.86496 1.72554 1.37819 1.40011 1.66980 1.06696 1.07453 1.33794 1.22098 1.01776 0.97583 0.95261 0.91338 0.92337 0.92871 0.90724 0.93325 0.92953 0.90230 0.94999 0.94436 0.92600 0.83828 0.85844 0.91526 0.92360 0.91959 0.77464 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.08 37.16 0.34 -2.09 16 2 C 0.14 2.37 3.20 -67.93 -0.22 2.15 16 3 C -0.16 -2.64 8.60 37.16 0.32 -2.32 16 4 N -0.59 -11.72 2.52 -165.42 -0.42 -12.13 16 5 C 0.25 5.75 4.38 -5.19 -0.02 5.72 16 6 C -0.53 -13.43 7.84 -34.44 -0.27 -13.70 16 7 H 0.06 1.59 7.59 -52.49 -0.40 1.19 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -24.60 13.29 55.43 0.74 -23.87 16 10 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 14 C 0.20 3.85 6.55 -83.63 -0.55 3.30 16 15 C -0.15 -2.93 9.26 -39.09 -0.36 -3.29 16 16 C -0.11 -1.82 9.70 -39.47 -0.38 -2.21 16 17 C 0.00 -0.08 5.78 -82.57 -0.48 -0.56 16 18 C 0.17 2.33 3.91 -27.88 -0.11 2.22 16 19 H 0.10 1.26 7.86 -51.93 -0.41 0.85 16 20 C -0.17 -2.09 9.39 37.16 0.35 -1.74 16 21 O -0.56 -7.95 13.33 -35.23 -0.47 -8.42 16 22 N -0.44 -7.50 9.84 -9.30 -0.09 -7.59 16 23 C 0.00 -0.06 10.49 -17.32 -0.18 -0.24 16 24 H 0.07 1.16 6.52 -51.93 -0.34 0.82 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.10 5.34 -51.93 -0.28 0.82 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.54 6.92 -51.93 -0.36 1.18 16 31 H 0.03 0.80 6.49 -51.93 -0.34 0.47 16 32 H 0.04 0.92 6.19 -51.93 -0.32 0.60 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.14 3.03 6.42 -52.49 -0.34 2.70 16 35 H 0.12 1.79 7.94 -52.49 -0.42 1.37 16 36 H 0.07 0.83 7.94 -51.93 -0.41 0.41 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.38 4.55 9.02 45.56 0.41 4.96 16 40 H 0.15 2.25 5.76 -52.49 -0.30 1.95 16 LS Contribution 324.64 15.07 4.89 4.89 Total: -1.00 -27.77 324.64 -7.20 -34.97 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.17 Total: 7.78 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -1.66 Total: -11.19 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.23 Total: -43.59 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.47 Total: -8.42 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.77 -7.20 -34.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149626730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.490 kcal (2) G-P(sol) polarization free energy of solvation -27.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds