Wall clock time and date at job start Mon Mar 30 2020 07:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47113 * 2 1 4 4 N 1.46493 * 109.47315 * 239.99933 * 2 1 3 5 5 C 1.46503 * 120.00186 * 55.26659 * 4 2 1 6 6 C 1.50697 * 109.47257 * 89.99650 * 5 4 2 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99947 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00518 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99894 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47280 * 90.00025 * 10 8 6 12 12 H 1.48506 * 109.46796 * 209.99882 * 10 8 6 13 13 H 1.48495 * 109.46913 * 329.99727 * 10 8 6 14 14 C 1.39710 * 120.00338 * 235.26378 * 4 2 1 15 15 C 1.39312 * 120.49384 * 185.42262 * 14 4 2 16 16 C 1.38499 * 118.35671 * 179.75821 * 15 14 4 17 17 C 1.38270 * 119.23814 * 0.49978 * 16 15 14 18 18 C 1.50699 * 119.53189 * 179.74571 * 17 16 15 19 19 H 1.09004 * 109.47348 * 5.01800 * 18 17 16 20 20 C 1.53004 * 109.47241 * 125.01734 * 18 17 16 21 21 O 1.42906 * 109.47034 * 245.01472 * 18 17 16 22 22 N 1.31851 * 120.93023 * 359.76120 * 17 16 15 23 23 C 1.31811 * 121.80199 * 359.97438 * 22 17 16 24 24 H 1.08998 * 109.46866 * 59.99895 * 1 2 3 25 25 H 1.08999 * 109.46933 * 300.00253 * 1 2 3 26 26 H 1.08992 * 109.47174 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47322 * 119.99828 * 2 1 3 28 28 H 1.09002 * 109.47172 * 60.00497 * 3 2 1 29 29 H 1.09006 * 109.46985 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47340 * 299.99814 * 3 2 1 31 31 H 1.08997 * 109.47443 * 210.00181 * 5 4 2 32 32 H 1.09001 * 109.46833 * 329.99958 * 5 4 2 33 33 H 0.96997 * 120.00654 * 179.97438 * 9 8 6 34 34 H 1.07998 * 120.82149 * 359.97438 * 15 14 4 35 35 H 1.07999 * 120.37683 * 180.21512 * 16 15 14 36 36 H 1.09004 * 109.46896 * 59.99788 * 20 18 17 37 37 H 1.09004 * 109.47115 * 179.97438 * 20 18 17 38 38 H 1.09002 * 109.47044 * 300.00016 * 20 18 17 39 39 H 0.96698 * 114.00081 * 300.00369 * 21 18 17 40 40 H 1.08002 * 119.67282 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 1.5810 -0.2534 -2.5242 6 6 2.5318 0.7922 -3.0473 7 1 3.3776 1.1001 -2.4503 8 6 2.3221 1.3558 -4.2880 9 7 1.2920 0.9814 -5.0148 10 14 3.5011 2.6515 -4.9366 11 1 4.5930 1.9913 -5.6963 12 1 2.7689 3.5834 -5.8315 13 1 4.0786 3.4097 -3.7979 14 6 2.9012 -1.7661 -1.0703 15 6 3.4598 -2.3581 -2.2009 16 6 4.3335 -3.4181 -2.0247 17 6 4.6126 -3.8576 -0.7438 18 6 5.5578 -5.0142 -0.5447 19 1 5.9812 -5.3070 -1.5056 20 6 6.6841 -4.5953 0.4024 21 8 4.8473 -6.1185 0.0192 22 7 4.0631 -3.2791 0.3059 23 6 3.2306 -2.2645 0.1835 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.5704 -1.1067 -3.2024 32 1 0.5785 0.1688 -2.4559 33 1 1.1442 1.3782 -5.8874 34 1 3.2202 -1.9970 -3.1902 35 1 4.7880 -3.8989 -2.8783 36 1 6.2607 -4.3025 1.3633 37 1 7.3676 -5.4321 0.5468 38 1 7.2261 -3.7530 -0.0276 39 1 4.4431 -5.9294 0.8770 40 1 2.7999 -1.8167 1.0669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149626730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:03 Heat of formation + Delta-G solvation = -38.034596 kcal Electronic energy + Delta-G solvation = -20345.206939 eV Core-core repulsion = 17351.884097 eV Total energy + Delta-G solvation = -2993.322843 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33807 -39.04145 -37.54475 -34.97307 -33.90941 -32.88214 -31.71804 -30.32639 -28.25799 -27.97381 -25.68100 -24.28924 -23.99095 -22.04766 -20.77742 -18.79754 -18.56790 -17.86053 -17.45480 -16.64459 -16.01064 -15.78912 -15.45139 -15.30233 -15.05866 -14.51523 -14.46374 -14.17290 -14.07215 -13.89394 -13.31603 -13.15360 -13.08678 -12.84671 -12.80400 -12.66507 -12.44744 -12.31833 -12.07844 -11.90167 -11.70311 -11.50357 -11.14372 -10.96919 -10.61549 -10.33247 -10.22958 -8.39663 -7.93391 -6.32754 0.40002 0.58609 1.35858 1.38031 1.46987 2.29801 2.46458 2.97093 3.09135 3.45529 3.70113 3.80196 3.97836 4.10303 4.14135 4.28301 4.37183 4.38229 4.48814 4.60359 4.72578 4.82460 4.87145 4.89114 4.95459 5.01049 5.11356 5.12522 5.17512 5.29026 5.35944 5.41098 5.47953 5.52125 5.68421 5.79134 6.09379 6.41263 6.76338 6.80320 6.83175 7.17995 7.37446 8.85059 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019288 B = 0.005764 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.332727 B = 4856.991091 C = 5647.469206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 C -0.151 4.151 4 N -0.603 5.603 5 C 0.266 3.734 6 C -0.525 4.525 7 H 0.051 0.949 8 C 0.015 3.985 9 N -0.926 5.926 10 Si 0.952 3.048 11 H -0.278 1.278 12 H -0.282 1.282 13 H -0.270 1.270 14 C 0.179 3.821 15 C -0.173 4.173 16 C -0.109 4.109 17 C -0.001 4.001 18 C 0.171 3.829 19 H 0.117 0.883 20 C -0.168 4.168 21 O -0.571 6.571 22 N -0.439 5.439 23 C 0.003 3.997 24 H 0.040 0.960 25 H 0.091 0.909 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.045 0.955 31 H 0.005 0.995 32 H 0.021 0.979 33 H 0.265 0.735 34 H 0.116 0.884 35 H 0.147 0.853 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.386 0.614 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.720 -6.109 11.037 13.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.035 3.965 3 C -0.209 4.209 4 N -0.309 5.309 5 C 0.145 3.855 6 C -0.564 4.564 7 H 0.070 0.930 8 C -0.184 4.184 9 N -0.567 5.567 10 Si 0.778 3.222 11 H -0.204 1.204 12 H -0.207 1.207 13 H -0.194 1.194 14 C 0.070 3.930 15 C -0.204 4.204 16 C -0.129 4.129 17 C -0.141 4.141 18 C 0.112 3.888 19 H 0.134 0.866 20 C -0.225 4.225 21 O -0.378 6.378 22 N -0.148 5.148 23 C -0.161 4.161 24 H 0.060 0.940 25 H 0.110 0.890 26 H 0.072 0.928 27 H 0.119 0.881 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.023 0.977 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.134 0.866 35 H 0.164 0.836 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.235 0.765 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.870 -6.495 11.133 13.779 hybrid contribution -0.142 1.684 -1.494 2.255 sum 4.728 -4.811 9.640 11.765 Atomic orbital electron populations 1.22099 0.94579 1.01937 1.02591 1.21193 0.94694 0.93215 0.87441 1.22101 1.00290 0.96298 1.02207 1.47195 1.45977 1.30505 1.07224 1.18784 0.94499 0.93453 0.78757 1.21705 1.10956 1.22000 1.01777 0.93028 1.25662 0.96840 0.98867 0.97011 1.70022 1.29781 1.44468 1.12388 0.85648 0.79051 0.79225 0.78322 1.20352 1.20716 1.19441 1.19191 0.90152 0.88424 0.95275 1.21286 1.01151 0.99548 0.98408 1.21904 0.96602 0.95568 0.98823 1.21809 1.02662 1.00846 0.88831 1.20639 0.88410 0.81637 0.98144 0.86566 1.22332 0.98196 1.02053 0.99964 1.86489 1.72758 1.37829 1.40704 1.67102 1.06588 1.07263 1.33894 1.22399 1.01290 0.97312 0.95054 0.94048 0.89003 0.92790 0.88088 0.89786 0.94227 0.93593 0.97716 0.96085 0.92586 0.86621 0.83572 0.91999 0.90490 0.92028 0.76515 0.81456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 9.08 71.98 0.65 -3.82 16 2 C 0.14 4.39 3.20 44.99 0.14 4.54 16 3 C -0.15 -4.90 8.60 71.98 0.62 -4.28 16 4 N -0.60 -24.13 2.52 -677.27 -1.71 -25.84 16 5 C 0.27 13.00 4.38 85.63 0.37 13.38 16 6 C -0.53 -27.60 7.84 25.60 0.20 -27.40 16 7 H 0.05 2.76 7.59 -2.91 -0.02 2.74 16 8 C 0.02 0.83 5.46 84.65 0.46 1.29 16 9 N -0.93 -52.61 13.29 21.45 0.28 -52.32 16 10 Si 0.95 42.84 29.54 68.60 2.03 44.86 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 14 C 0.18 6.90 6.55 38.30 0.25 7.15 16 15 C -0.17 -6.90 9.26 22.59 0.21 -6.69 16 16 C -0.11 -3.61 9.70 22.34 0.22 -3.39 16 17 C 0.00 -0.03 5.78 42.56 0.25 0.22 16 18 C 0.17 4.20 3.91 29.85 0.12 4.32 16 19 H 0.12 2.52 7.86 -2.38 -0.02 2.50 16 20 C -0.17 -3.51 9.39 71.98 0.68 -2.84 16 21 O -0.57 -14.60 13.33 -148.98 -1.99 -16.58 16 22 N -0.44 -14.04 9.84 -183.35 -1.80 -15.85 16 23 C 0.00 0.10 10.49 84.85 0.89 0.99 16 24 H 0.04 1.42 6.52 -2.39 -0.02 1.40 16 25 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.10 2.69 5.34 -2.39 -0.01 2.68 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.04 1.79 6.92 -2.39 -0.02 1.78 16 31 H 0.00 0.26 6.49 -2.39 -0.02 0.25 16 32 H 0.02 1.10 6.19 -2.39 -0.01 1.08 16 33 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 34 H 0.12 5.21 6.42 -2.91 -0.02 5.19 16 35 H 0.15 4.05 7.94 -2.91 -0.02 4.02 16 36 H 0.06 1.36 7.94 -2.38 -0.02 1.34 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.39 8.31 9.02 -74.06 -0.67 7.65 16 40 H 0.17 4.71 5.76 -2.91 -0.02 4.69 16 Total: -1.00 -60.61 324.64 2.24 -58.36 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.37 Total: 23.90 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 5.06 Total: -16.54 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -3.23 Total: -94.01 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -1.99 Total: -16.58 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -60.61 2.24 -58.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149626730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.327 kcal (2) G-P(sol) polarization free energy of solvation -60.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds