Wall clock time and date at job start Mon Mar 30 2020 07:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42903 * 109.46514 * 2 1 4 4 C 1.35896 * 116.99405 * 180.02562 * 3 2 1 5 5 C 1.38671 * 119.98710 * 359.97438 * 4 3 2 6 6 C 1.38847 * 120.02350 * 180.02562 * 5 4 3 7 7 N 1.39664 * 120.01234 * 180.02562 * 6 5 4 8 8 C 1.38841 * 119.98057 * 0.02562 * 6 5 4 9 9 C 1.38787 * 119.96114 * 359.97438 * 8 6 5 10 10 N 1.39666 * 120.01052 * 180.02562 * 9 8 6 11 11 C 1.46503 * 119.99894 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47088 * 90.00342 * 11 10 9 13 13 C 1.46496 * 119.99926 * 359.97438 * 10 9 8 14 14 C 1.50694 * 109.47428 * 89.99564 * 13 10 9 15 15 H 1.07998 * 120.00094 * 359.97438 * 14 13 10 16 16 C 1.37881 * 120.00174 * 179.97438 * 14 13 10 17 17 N 1.31517 * 119.99660 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99855 * 0.02562 * 16 14 13 19 19 H 1.48505 * 109.46866 * 89.99982 * 18 16 14 20 20 H 1.48498 * 109.47299 * 209.99689 * 18 16 14 21 21 H 1.48501 * 109.47194 * 330.00306 * 18 16 14 22 22 C 1.38645 * 119.97851 * 179.97438 * 4 3 2 23 23 H 1.09004 * 109.47002 * 299.99315 * 1 2 3 24 24 H 1.08995 * 109.47568 * 60.00025 * 1 2 3 25 25 H 1.09005 * 109.46357 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47156 * 240.00402 * 2 1 3 27 27 H 1.08995 * 109.47568 * 119.99975 * 2 1 3 28 28 H 1.08010 * 119.98710 * 0.04712 * 5 4 3 29 29 H 0.97002 * 120.00263 * 179.97438 * 7 6 5 30 30 H 0.97005 * 119.99659 * 359.97438 * 7 6 5 31 31 H 1.08002 * 120.01794 * 180.02562 * 8 6 5 32 32 H 1.09003 * 109.46618 * 210.00128 * 11 10 9 33 33 H 1.08999 * 109.47069 * 329.99819 * 11 10 9 34 34 H 1.08997 * 109.47352 * 179.97438 * 12 11 10 35 35 H 1.09004 * 109.46931 * 300.00144 * 12 11 10 36 36 H 1.09006 * 109.47190 * 59.99288 * 12 11 10 37 37 H 1.08993 * 109.47164 * 210.00105 * 13 10 9 38 38 H 1.09007 * 109.46995 * 329.99923 * 13 10 9 39 39 H 0.97007 * 119.98952 * 180.02562 * 17 16 14 40 40 H 1.07999 * 119.98804 * 0.26087 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5254 -0.0005 5 6 4.1980 0.4255 -0.0005 6 6 5.5746 0.6066 -0.0005 7 7 6.4249 -0.5014 -0.0011 8 6 6.1056 1.8894 0.0000 9 6 5.2598 2.9897 -0.0001 10 7 5.7929 4.2806 -0.0001 11 6 4.8998 5.4419 -0.0007 12 6 4.5883 5.8465 1.4416 13 6 7.2451 4.4734 0.0005 14 6 7.7437 4.5391 -1.4201 15 1 7.0485 4.4461 -2.2413 16 6 9.0876 4.7179 -1.6715 17 7 9.5226 4.7758 -2.9113 18 14 10.2902 4.8780 -0.2512 19 1 10.7936 3.5325 0.1252 20 1 11.4305 5.7359 -0.6623 21 1 9.6027 5.4927 0.9128 22 6 3.8829 2.8068 -0.0011 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0278 0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.7847 -0.5724 -0.0008 29 1 7.3866 -0.3748 -0.0014 30 1 6.0537 -1.3976 -0.0010 31 1 7.1764 2.0309 -0.0005 32 1 5.3840 6.2724 -0.5145 33 1 3.9730 5.1873 -0.5149 34 1 3.9242 6.7108 1.4412 35 1 4.1042 5.0160 1.9554 36 1 5.5152 6.1011 1.9558 37 1 7.4880 5.4035 0.5142 38 1 7.7222 3.6390 0.5147 39 1 10.4681 4.9012 -3.0881 40 1 3.2245 3.6629 0.0031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156579728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:50 Heat of formation + Delta-G solvation = -10.905052 kcal Electronic energy + Delta-G solvation = -20124.820290 eV Core-core repulsion = 17132.673873 eV Total energy + Delta-G solvation = -2992.146418 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.71953 -37.98057 -36.19046 -33.40121 -32.61600 -31.56997 -30.59812 -28.86451 -27.77717 -26.56808 -23.59249 -23.01263 -21.89026 -21.14445 -19.54560 -17.70080 -16.87110 -16.62742 -15.87943 -15.58234 -15.22888 -14.91875 -14.70951 -14.17050 -13.94984 -13.27481 -12.94705 -12.88000 -12.72616 -12.51311 -12.22446 -12.00141 -11.88137 -11.81605 -11.35412 -11.06097 -10.86436 -10.81306 -10.65895 -10.53627 -10.35503 -10.09937 -9.82863 -9.41011 -8.62752 -8.32109 -7.00400 -6.44318 -6.11071 -4.10050 2.30707 2.41194 3.22723 3.30778 3.32101 3.45073 4.07231 4.34685 4.36993 4.61342 4.94762 5.03652 5.19662 5.25847 5.48071 5.50332 5.70553 5.76378 5.78090 5.81843 5.86742 5.99849 6.02460 6.13698 6.23755 6.30572 6.34817 6.61205 6.66266 6.79034 6.87792 7.00767 7.12705 7.19791 7.58002 7.72760 8.02092 8.16494 8.21495 8.43548 8.57305 8.98146 9.49247 11.02133 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.005454 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.907831 B = 5132.701730 C = 5871.435011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.320 6.320 4 C 0.203 3.797 5 C -0.351 4.351 6 C 0.283 3.717 7 N -0.879 5.879 8 C -0.292 4.292 9 C 0.309 3.691 10 N -0.600 5.600 11 C 0.120 3.880 12 C -0.169 4.169 13 C 0.222 3.778 14 C -0.530 4.530 15 H 0.077 0.923 16 C 0.072 3.928 17 N -0.896 5.896 18 Si 0.871 3.129 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.265 1.265 22 C -0.291 4.291 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.111 0.889 29 H 0.397 0.603 30 H 0.391 0.609 31 H 0.128 0.872 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.264 0.736 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.201 -8.211 8.134 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.234 6.234 4 C 0.156 3.844 5 C -0.375 4.375 6 C 0.177 3.823 7 N -0.418 5.418 8 C -0.319 4.319 9 C 0.201 3.799 10 N -0.304 5.304 11 C -0.004 4.004 12 C -0.228 4.228 13 C 0.101 3.899 14 C -0.569 4.569 15 H 0.095 0.905 16 C -0.131 4.131 17 N -0.535 5.535 18 Si 0.698 3.302 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.190 1.190 22 C -0.316 4.316 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.129 0.871 29 H 0.225 0.775 30 H 0.218 0.782 31 H 0.145 0.855 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.123 -7.765 8.020 16.480 hybrid contribution 1.188 -0.489 0.493 1.375 sum -10.935 -8.253 8.513 16.130 Atomic orbital electron populations 1.21773 0.93443 1.02337 1.03305 1.22629 0.95066 0.82855 1.01170 1.86006 1.20157 1.28375 1.88868 1.18170 0.80724 0.93203 0.92277 1.20069 0.92154 0.97239 1.28088 1.17090 0.88905 0.87012 0.89293 1.42420 1.08098 1.05698 1.85548 1.20038 0.99995 0.89474 1.22429 1.17101 0.90363 0.85077 0.87400 1.46784 1.06496 1.01293 1.75844 1.21286 0.94263 0.89042 0.95844 1.22229 1.01343 1.00872 0.98312 1.19639 0.76194 0.96393 0.97715 1.21500 0.93695 1.49988 0.91716 0.90476 1.24891 0.98054 0.94727 0.95379 1.69913 1.15057 1.49863 1.18620 0.86926 0.81390 0.78645 0.83202 1.20063 1.21046 1.18997 1.19461 0.93178 0.94596 1.24319 0.91748 0.91665 0.90850 0.92364 0.92455 0.87113 0.77463 0.78219 0.85465 0.90536 0.91364 0.92505 0.92622 0.92758 0.95471 0.95487 0.92608 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 2 C 0.06 0.68 5.46 37.16 0.20 0.88 16 3 O -0.32 -5.08 10.13 -19.41 -0.20 -5.27 16 4 C 0.20 3.60 6.68 -39.27 -0.26 3.34 16 5 C -0.35 -5.88 8.88 -39.20 -0.35 -6.22 16 6 C 0.28 5.00 6.75 -83.84 -0.57 4.43 16 7 N -0.88 -12.19 9.09 32.38 0.29 -11.89 16 8 C -0.29 -5.99 9.05 -39.16 -0.35 -6.35 16 9 C 0.31 6.43 6.55 -83.84 -0.55 5.88 16 10 N -0.60 -12.70 2.59 -173.17 -0.45 -13.15 16 11 C 0.12 2.13 5.87 -4.04 -0.02 2.11 16 12 C -0.17 -2.54 10.24 37.16 0.38 -2.16 16 13 C 0.22 5.24 3.98 -5.20 -0.02 5.22 16 14 C -0.53 -14.78 9.94 -34.44 -0.34 -15.12 16 15 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 16 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 17 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 18 Si 0.87 20.74 27.47 -169.99 -4.67 16.08 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 22 C -0.29 -5.56 9.14 -39.19 -0.36 -5.91 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 27 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 28 H 0.11 1.57 6.29 -52.48 -0.33 1.24 16 29 H 0.40 5.21 8.84 -40.82 -0.36 4.85 16 30 H 0.39 4.29 8.84 -40.82 -0.36 3.93 16 31 H 0.13 2.78 6.13 -52.49 -0.32 2.46 16 32 H 0.08 1.40 8.07 -51.93 -0.42 0.99 16 33 H 0.07 1.15 6.19 -51.93 -0.32 0.83 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 38 H 0.03 0.64 5.62 -51.92 -0.29 0.35 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.12 2.16 6.13 -52.49 -0.32 1.84 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -31.44 326.05 -7.31 -38.75 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.02 Total: 9.80 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -1.96 Total: -12.92 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.62 Total: -51.34 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.20 Total: -5.27 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.44 -7.31 -38.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156579728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.846 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds