Wall clock time and date at job start Mon Mar 30 2020 07:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47106 * 2 1 4 4 C 1.35900 * 116.99865 * 180.02562 * 3 2 1 5 5 C 1.38670 * 119.98302 * 359.97438 * 4 3 2 6 6 C 1.38854 * 120.02229 * 179.97438 * 5 4 3 7 7 N 1.39653 * 120.01287 * 179.97438 * 6 5 4 8 8 C 1.38842 * 119.97816 * 0.02562 * 6 5 4 9 9 C 1.38788 * 119.95967 * 359.97438 * 8 6 5 10 10 N 1.39667 * 120.00864 * 180.02562 * 9 8 6 11 11 C 1.46500 * 119.99751 * 354.21275 * 10 9 8 12 12 C 1.46498 * 120.00360 * 174.21472 * 10 9 8 13 13 H 1.09001 * 109.47015 * 4.67490 * 12 10 9 14 14 C 1.52999 * 109.47258 * 124.67580 * 12 10 9 15 15 C 1.50703 * 109.47043 * 244.68037 * 12 10 9 16 16 H 1.07994 * 119.99902 * 359.97438 * 15 12 10 17 17 C 1.37871 * 119.99874 * 179.97438 * 15 12 10 18 18 N 1.31515 * 120.00320 * 179.97438 * 17 15 12 19 19 Si 1.86802 * 120.00379 * 359.97438 * 17 15 12 20 20 H 1.48498 * 109.47232 * 89.99810 * 19 17 15 21 21 H 1.48496 * 109.47499 * 209.99960 * 19 17 15 22 22 H 1.48508 * 109.46828 * 330.00088 * 19 17 15 23 23 C 1.38642 * 119.97853 * 179.72241 * 4 3 2 24 24 H 1.09002 * 109.46784 * 299.99692 * 1 2 3 25 25 H 1.08996 * 109.46788 * 59.99758 * 1 2 3 26 26 H 1.08992 * 109.47122 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47202 * 240.00100 * 2 1 3 28 28 H 1.08999 * 109.47482 * 119.99994 * 2 1 3 29 29 H 1.07999 * 119.99048 * 359.95846 * 5 4 3 30 30 H 0.97001 * 120.00365 * 0.02562 * 7 6 5 31 31 H 0.97000 * 120.00364 * 180.02562 * 7 6 5 32 32 H 1.07994 * 120.01730 * 179.97438 * 8 6 5 33 33 H 1.09004 * 109.47038 * 90.00032 * 11 10 9 34 34 H 1.09000 * 109.47123 * 209.99926 * 11 10 9 35 35 H 1.08996 * 109.47429 * 330.00163 * 11 10 9 36 36 H 1.08996 * 109.47401 * 300.00005 * 14 12 10 37 37 H 1.09001 * 109.46749 * 60.00329 * 14 12 10 38 38 H 1.08998 * 109.46875 * 180.02562 * 14 12 10 39 39 H 0.96996 * 120.00358 * 179.97438 * 18 17 15 40 40 H 1.08000 * 119.99045 * 0.02712 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1980 0.4253 -0.0005 6 6 5.5747 0.6063 -0.0016 7 7 6.4249 -0.5016 -0.0011 8 6 6.1058 1.8891 -0.0022 9 6 5.2599 2.9894 -0.0022 10 7 5.7931 4.2803 -0.0033 11 6 7.2395 4.4755 0.1235 12 6 4.9060 5.4392 -0.1312 13 1 3.8687 5.1045 -0.1303 14 6 5.1362 6.3900 1.0452 15 6 5.2009 6.1574 -1.4229 16 1 5.9722 5.7878 -2.0823 17 6 4.4860 7.2862 -1.7627 18 7 4.7436 7.9133 -2.8896 19 14 3.1513 7.9251 -0.6225 20 1 3.7419 8.8908 0.3387 21 1 2.0997 8.6031 -1.4223 22 1 2.5514 6.7891 0.1226 23 6 3.8831 2.8066 -0.0064 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7847 -0.5725 0.0006 30 1 6.0537 -1.3978 -0.0003 31 1 7.3866 -0.3751 -0.0014 32 1 7.1764 2.0306 -0.0026 33 1 7.6932 4.4838 -0.8676 34 1 7.4357 5.4254 0.6209 35 1 7.6657 3.6627 0.7114 36 1 4.9229 5.8706 1.9793 37 1 6.1736 6.7247 1.0441 38 1 4.4759 7.2520 0.9502 39 1 4.2404 8.7073 -3.1289 40 1 3.2248 3.6628 -0.0101 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156718780.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:11 Heat of formation + Delta-G solvation = 2.950012 kcal Electronic energy + Delta-G solvation = -20254.722187 eV Core-core repulsion = 17263.176570 eV Total energy + Delta-G solvation = -2991.545617 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.75945 -38.02794 -36.39498 -33.67629 -32.62337 -31.39920 -30.40997 -28.58980 -27.89234 -25.69264 -24.95938 -23.23950 -21.87149 -21.16159 -19.29980 -17.83150 -16.96721 -16.43328 -15.85838 -15.68168 -15.30581 -15.10595 -14.50937 -14.29890 -13.76301 -13.48064 -13.03256 -12.76937 -12.72313 -12.39574 -12.20376 -12.09592 -11.91996 -11.71325 -11.37297 -11.17913 -10.90693 -10.84694 -10.72924 -10.36842 -10.14417 -9.91683 -9.58537 -9.16821 -8.60203 -8.34895 -7.15425 -6.46721 -6.11165 -4.11173 2.21405 2.33567 3.24323 3.36407 3.37850 3.45370 4.01714 4.24597 4.36070 4.52131 4.98214 5.06877 5.19588 5.27859 5.48945 5.61229 5.78933 5.80703 5.81082 5.85372 6.00192 6.04614 6.13448 6.19989 6.33773 6.36615 6.40628 6.55955 6.67820 6.78927 6.86070 6.97062 7.07669 7.22129 7.61028 7.64259 7.93822 8.05877 8.15598 8.35722 8.60660 8.93908 9.49758 11.01924 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.006391 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.841697 B = 4380.149205 C = 5546.583716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.317 6.317 4 C 0.208 3.792 5 C -0.352 4.352 6 C 0.284 3.716 7 N -0.881 5.881 8 C -0.316 4.316 9 C 0.309 3.691 10 N -0.596 5.596 11 C 0.102 3.898 12 C 0.235 3.765 13 H 0.055 0.945 14 C -0.164 4.164 15 C -0.525 4.525 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.896 5.896 19 Si 0.883 3.117 20 H -0.278 1.278 21 H -0.294 1.294 22 H -0.264 1.264 23 C -0.279 4.279 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.112 0.888 30 H 0.392 0.608 31 H 0.394 0.606 32 H 0.116 0.884 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.035 0.965 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.265 0.735 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 -15.771 7.913 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.231 6.231 4 C 0.161 3.839 5 C -0.377 4.377 6 C 0.179 3.821 7 N -0.419 5.419 8 C -0.344 4.344 9 C 0.199 3.801 10 N -0.300 5.300 11 C -0.042 4.042 12 C 0.132 3.868 13 H 0.072 0.928 14 C -0.222 4.222 15 C -0.563 4.563 16 H 0.096 0.904 17 C -0.129 4.129 18 N -0.534 5.534 19 Si 0.713 3.287 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.189 1.189 23 C -0.304 4.304 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.130 0.870 30 H 0.219 0.781 31 H 0.222 0.778 32 H 0.134 0.866 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.254 -15.182 7.790 17.109 hybrid contribution -0.307 -0.005 0.392 0.498 sum -1.561 -15.186 8.181 17.321 Atomic orbital electron populations 1.21775 0.93367 1.02301 1.03507 1.22643 0.95223 0.82795 1.01047 1.86058 1.20020 1.28379 1.88602 1.18229 0.80923 0.93114 0.91585 1.20068 0.92089 0.97314 1.28233 1.17018 0.89006 0.86757 0.89332 1.42386 1.07799 1.05854 1.85901 1.19795 0.98699 0.89882 1.26001 1.17155 0.90845 0.84738 0.87348 1.46751 1.05946 1.02709 1.74603 1.21442 0.81263 1.00915 1.00533 1.19324 0.90815 0.82491 0.94143 0.92779 1.22496 1.01632 0.99767 0.98312 1.21260 1.21421 1.10205 1.03414 0.90388 1.24894 0.96643 0.96236 0.95094 1.69879 1.41236 1.19491 1.22757 0.86932 0.81915 0.79535 0.80346 1.20467 1.22170 1.18931 1.19691 0.93616 0.94996 1.22070 0.91672 0.91541 0.90851 0.92369 0.92478 0.86997 0.78081 0.77811 0.86648 0.93681 0.91459 0.92910 0.94640 0.92497 0.93275 0.92505 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.11 16 2 C 0.06 0.71 5.46 37.16 0.20 0.92 16 3 O -0.32 -5.42 10.13 -19.43 -0.20 -5.62 16 4 C 0.21 3.84 6.68 -39.27 -0.26 3.58 16 5 C -0.35 -5.67 8.88 -39.19 -0.35 -6.01 16 6 C 0.28 4.45 6.75 -83.84 -0.57 3.89 16 7 N -0.88 -9.87 9.09 32.38 0.29 -9.57 16 8 C -0.32 -5.56 9.00 -39.15 -0.35 -5.91 16 9 C 0.31 6.29 6.53 -83.84 -0.55 5.74 16 10 N -0.60 -12.66 2.89 -173.37 -0.50 -13.16 16 11 C 0.10 1.84 9.51 59.85 0.57 2.41 16 12 C 0.23 5.59 2.17 -69.08 -0.15 5.44 16 13 H 0.05 1.35 4.36 -51.93 -0.23 1.13 16 14 C -0.16 -3.54 8.56 37.16 0.32 -3.23 16 15 C -0.52 -14.65 9.02 -34.44 -0.31 -14.96 16 16 H 0.08 2.40 8.03 -52.49 -0.42 1.98 16 17 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 18 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 19 Si 0.88 21.72 24.37 -169.99 -4.14 17.58 16 20 H -0.28 -6.59 6.87 56.52 0.39 -6.21 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 23 C -0.28 -5.82 9.25 -39.19 -0.36 -6.18 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.66 7.66 -51.93 -0.40 0.27 16 28 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 29 H 0.11 1.51 6.28 -52.49 -0.33 1.18 16 30 H 0.39 3.50 8.84 -40.82 -0.36 3.14 16 31 H 0.39 3.73 8.84 -40.82 -0.36 3.37 16 32 H 0.12 1.84 6.30 -52.49 -0.33 1.51 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.18 6.19 -51.93 -0.32 0.86 16 35 H 0.05 0.80 6.45 -51.93 -0.34 0.46 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 1.17 6.53 -51.93 -0.34 0.83 16 38 H 0.05 1.10 3.28 -51.93 -0.17 0.93 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.13 2.88 5.73 -52.49 -0.30 2.58 16 LS Contribution 313.64 15.07 4.73 4.73 Total: -1.00 -31.81 313.64 -6.16 -37.97 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.59 Total: 7.96 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -1.52 Total: -13.41 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.57 Total: -49.21 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.20 Total: -5.62 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.14 Total: 17.58 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.81 -6.16 -37.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156718780.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.918 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds