Wall clock time and date at job start Mon Mar 30 2020 06:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47146 * 2 1 4 4 C 1.52997 * 109.47257 * 120.00142 * 2 1 3 5 5 N 1.46505 * 109.47134 * 64.99899 * 4 2 1 6 6 C 1.46502 * 120.00042 * 264.58250 * 5 4 2 7 7 C 1.50701 * 109.46781 * 274.65914 * 6 5 4 8 8 H 1.07999 * 120.00526 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99656 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00340 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99898 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46947 * 90.00162 * 11 9 7 13 13 H 1.48494 * 109.47059 * 210.00060 * 11 9 7 14 14 H 1.48501 * 109.47058 * 330.00192 * 11 9 7 15 15 C 1.34771 * 119.99880 * 84.57987 * 5 4 2 16 16 O 1.21288 * 120.00142 * 355.18963 * 15 5 4 17 17 C 1.50705 * 120.00026 * 175.46542 * 15 5 4 18 18 C 1.47201 * 112.84680 * 66.96587 * 17 15 5 19 19 N 5.34215 * 71.51763 * 187.73513 * 2 1 3 20 20 C 1.53784 * 113.61263 * 295.77701 * 17 15 5 21 21 C 1.53959 * 87.01465 * 220.04501 * 20 17 15 22 22 C 1.53780 * 113.61484 * 198.16560 * 17 15 5 23 23 H 1.09007 * 109.47391 * 60.00047 * 1 2 3 24 24 H 1.09001 * 109.47391 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47543 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47222 * 240.00141 * 2 1 3 27 27 H 1.09002 * 109.47076 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47309 * 299.99771 * 3 2 1 29 29 H 1.08998 * 109.47243 * 60.00281 * 3 2 1 30 30 H 1.09001 * 109.47117 * 304.99960 * 4 2 1 31 31 H 1.08997 * 109.47218 * 184.99661 * 4 2 1 32 32 H 1.09003 * 109.46901 * 34.65700 * 6 5 4 33 33 H 1.08992 * 109.47527 * 154.65987 * 6 5 4 34 34 H 0.97001 * 120.00590 * 180.02562 * 10 9 7 35 35 H 1.09000 * 113.61435 * 334.56404 * 20 17 15 36 36 H 1.08996 * 113.61242 * 105.46890 * 20 17 15 37 37 H 1.09002 * 113.53798 * 270.80758 * 21 20 17 38 38 H 1.09005 * 113.73936 * 139.94265 * 21 20 17 39 39 H 1.09007 * 113.61303 * 254.52634 * 22 17 15 40 40 H 1.08999 * 113.61442 * 25.34638 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.4329 -2.5863 1.8640 7 6 0.7392 -2.8874 3.3085 8 1 1.7420 -2.7547 3.6869 9 6 -0.2608 -3.3322 4.1470 10 7 -1.4818 -3.4943 3.6861 11 14 0.1189 -3.7061 5.9374 12 1 -0.0836 -2.4814 6.7525 13 1 -0.7866 -4.7786 6.4219 14 1 1.5290 -4.1554 6.0609 15 6 2.4177 -3.0143 0.5169 16 8 3.3786 -2.6259 -0.1131 17 6 2.0758 -4.4819 0.5413 18 6 0.8118 -4.7859 -0.1490 19 7 -0.1636 -5.0205 -0.6819 20 6 2.1827 -5.1161 1.9382 21 6 2.7978 -6.3454 1.2448 22 6 3.2415 -5.3930 0.1219 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6053 -0.2618 2.1369 31 1 3.1262 -0.6444 1.2951 32 1 -0.3248 -1.8047 1.8085 33 1 0.0618 -3.4874 1.3759 34 1 -2.1855 -3.8069 4.2761 35 1 2.8747 -4.5972 2.6015 36 1 1.2169 -5.3136 2.4031 37 1 2.0589 -7.0810 0.9269 38 1 3.6280 -6.7895 1.7941 39 1 3.1291 -5.8138 -0.8774 40 1 4.2235 -4.9493 0.2863 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167187774.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:47 Heat of formation + Delta-G solvation = 0.915679 kcal Electronic energy + Delta-G solvation = -21209.090631 eV Core-core repulsion = 18217.456799 eV Total energy + Delta-G solvation = -2991.633832 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39179 -37.81165 -36.06183 -35.28510 -34.02053 -32.36160 -27.99646 -27.50404 -26.78766 -25.36258 -24.97276 -22.97665 -20.74218 -20.28037 -19.18100 -16.97922 -16.54136 -15.90036 -15.68360 -14.84144 -14.53365 -14.35669 -14.29447 -13.55822 -13.29782 -13.06564 -12.54619 -12.43661 -12.34015 -12.27278 -12.02391 -11.94966 -11.58140 -11.35326 -11.29232 -11.09492 -10.94948 -10.91976 -10.69064 -10.52381 -10.47936 -10.24634 -10.12520 -9.98350 -9.73118 -9.06416 -8.58483 -7.79240 -6.21278 -4.28775 2.90412 3.10873 3.19341 3.23824 3.28010 3.30570 3.83595 4.28578 4.30982 4.81043 4.88329 5.08908 5.10645 5.18729 5.29850 5.30033 5.45759 5.62000 5.87978 5.92785 5.97109 6.02313 6.09496 6.12987 6.16879 6.24809 6.28677 6.33224 6.40801 6.56642 6.63698 6.69359 6.73823 6.78487 7.14740 7.44047 7.70502 7.93325 8.00178 8.21807 8.69549 8.85270 9.37495 10.85139 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.009901 C = 0.006959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.351822 B = 2827.325689 C = 4022.330541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.140 4.140 4 C 0.127 3.873 5 N -0.583 5.583 6 C 0.229 3.771 7 C -0.534 4.534 8 H 0.064 0.936 9 C 0.066 3.934 10 N -0.887 5.887 11 Si 0.892 3.108 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.270 1.270 15 C 0.535 3.465 16 O -0.558 6.558 17 C -0.013 4.013 18 C 0.245 3.755 19 N -0.425 5.425 20 C -0.090 4.090 21 C -0.152 4.152 22 C -0.099 4.099 23 H 0.044 0.956 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.039 0.961 34 H 0.266 0.734 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.368 1.141 -3.194 8.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 C -0.198 4.198 4 C 0.004 3.996 5 N -0.312 5.312 6 C 0.109 3.891 7 C -0.573 4.573 8 H 0.083 0.917 9 C -0.137 4.137 10 N -0.525 5.525 11 Si 0.719 3.281 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.195 1.195 15 C 0.320 3.680 16 O -0.438 6.438 17 C -0.020 4.020 18 C -0.073 4.073 19 N -0.101 5.101 20 C -0.129 4.129 21 C -0.190 4.190 22 C -0.138 4.138 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.152 0.950 -4.260 7.543 hybrid contribution 0.136 -0.025 1.325 1.332 sum 6.287 0.925 -2.935 7.000 Atomic orbital electron populations 1.21879 0.95099 1.02369 1.00926 1.21486 0.96242 0.95928 0.99524 1.21738 1.00777 0.95878 1.01429 1.21401 0.99860 0.80920 0.97442 1.48224 1.25808 1.07104 1.50053 1.19702 0.80834 0.96308 0.92289 1.21407 0.96107 1.45718 0.94078 0.91749 1.24926 0.94817 0.95268 0.98707 1.69932 1.01051 1.45406 1.36088 0.86584 0.78490 0.78185 0.84799 1.20592 1.21148 1.19514 1.19614 0.82886 0.86241 0.79247 1.90619 1.29983 1.79445 1.43789 1.19306 0.88420 0.94512 0.99721 1.27638 0.93309 0.93401 0.92947 1.81160 1.10217 1.08497 1.10197 1.22991 1.04104 0.93773 0.91998 1.23078 1.01037 0.97147 0.97720 1.22857 0.96835 0.94720 0.99405 0.93649 0.92104 0.92575 0.91158 0.92782 0.93008 0.92693 0.89967 0.91216 0.94051 0.94305 0.92469 0.87938 0.88280 0.90244 0.90471 0.90859 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.33 37.15 0.31 -2.07 16 2 C -0.11 -1.79 3.09 -90.63 -0.28 -2.07 16 3 C -0.14 -1.81 9.19 37.16 0.34 -1.47 16 4 C 0.13 2.24 4.77 -4.04 -0.02 2.22 16 5 N -0.58 -11.65 2.19 -175.06 -0.38 -12.04 16 6 C 0.23 5.19 3.88 -5.19 -0.02 5.17 16 7 C -0.53 -12.74 7.10 -34.44 -0.24 -12.99 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -23.80 13.29 55.43 0.74 -23.06 16 11 Si 0.89 19.49 29.54 -169.99 -5.02 14.47 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 14 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 15 C 0.54 10.53 6.59 -10.99 -0.07 10.45 16 16 O -0.56 -11.58 15.81 5.55 0.09 -11.49 16 17 C -0.01 -0.23 0.66 -157.63 -0.10 -0.33 16 18 C 0.24 4.83 11.67 -20.76 -0.24 4.58 16 19 N -0.43 -9.04 18.54 42.15 0.78 -8.26 16 20 C -0.09 -1.51 4.94 -25.82 -0.13 -1.64 16 21 C -0.15 -2.03 7.80 -25.82 -0.20 -2.23 16 22 C -0.10 -1.41 6.87 -25.92 -0.18 -1.59 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 1.15 6.23 -51.93 -0.32 0.82 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 31 H 0.07 1.21 7.66 -51.93 -0.40 0.81 16 32 H 0.04 1.01 6.42 -51.93 -0.33 0.68 16 33 H 0.04 0.94 4.69 -51.93 -0.24 0.70 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.10 1.71 8.03 -51.93 -0.42 1.30 16 36 H 0.10 1.92 7.42 -51.93 -0.39 1.53 16 37 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 40 H 0.11 1.45 7.74 -51.93 -0.40 1.05 16 LS Contribution 326.49 15.07 4.92 4.92 Total: -1.00 -27.48 326.49 -6.08 -33.55 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.26 Total: 2.31 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -0.94 Total: -0.41 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 1.13 Total: -43.36 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.48 -6.08 -33.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167187774.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.467 kcal (2) G-P(sol) polarization free energy of solvation -27.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds