Wall clock time and date at job start Mon Mar 30 2020 06:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35737 * 117.00148 * 2 1 4 4 C 1.39289 * 120.84298 * 359.97438 * 3 2 1 5 5 C 1.37950 * 119.08874 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.58514 * 179.97438 * 5 4 3 7 7 N 1.31976 * 120.82892 * 0.02562 * 5 4 3 8 8 C 1.31948 * 121.85842 * 0.02562 * 7 5 4 9 9 C 1.50707 * 119.58633 * 180.02562 * 8 7 5 10 10 N 1.46497 * 109.46633 * 274.99540 * 9 8 7 11 11 C 1.36939 * 119.99859 * 269.99611 * 10 9 8 12 12 H 1.08001 * 120.00564 * 330.52890 * 11 10 9 13 13 C 1.38819 * 120.00003 * 150.52664 * 11 10 9 14 14 N 1.31618 * 119.99646 * 341.60695 * 13 11 10 15 15 Si 1.86795 * 120.00101 * 161.60109 * 13 11 10 16 16 H 1.48494 * 109.47133 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46951 * 120.00203 * 15 13 11 18 18 H 1.48494 * 109.47498 * 240.00299 * 15 13 11 19 19 C 1.46502 * 120.00289 * 90.00292 * 10 9 8 20 20 C 1.52999 * 109.46672 * 298.24046 * 19 10 9 21 21 C 1.52994 * 109.47064 * 58.23963 * 19 10 9 22 22 C 1.37984 * 120.82540 * 0.26635 * 8 7 5 23 23 H 1.09000 * 109.47504 * 60.00268 * 1 2 3 24 24 H 1.09007 * 109.47165 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46938 * 299.99933 * 1 2 3 26 26 H 1.07994 * 120.45768 * 359.97438 * 4 3 2 27 27 H 1.09003 * 109.47091 * 270.01963 * 6 5 4 28 28 H 1.08997 * 109.47218 * 30.02593 * 6 5 4 29 29 H 1.09001 * 109.47069 * 150.02211 * 6 5 4 30 30 H 1.09001 * 109.46894 * 154.99541 * 9 8 7 31 31 H 1.08997 * 109.47059 * 34.99218 * 9 8 7 32 32 H 0.97001 * 119.99990 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.47003 * 178.24321 * 19 10 9 34 34 H 1.08998 * 109.47181 * 60.00384 * 20 19 10 35 35 H 1.09002 * 109.46566 * 179.97438 * 20 19 10 36 36 H 1.09000 * 109.47445 * 299.99859 * 20 19 10 37 37 H 1.08995 * 109.47567 * 60.00178 * 21 19 10 38 38 H 1.09002 * 109.47216 * 179.97438 * 21 19 10 39 39 H 1.08998 * 109.47503 * 300.00052 * 21 19 10 40 40 H 1.08001 * 120.45593 * 179.71121 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3886 -0.0005 5 6 1.9675 3.5980 0.0000 6 6 1.1766 4.8808 -0.0011 7 7 3.2864 3.6458 0.0005 8 6 4.0230 2.5510 0.0001 9 6 5.5257 2.6652 0.0013 10 7 6.0044 2.8234 -1.3742 11 6 6.3178 1.7194 -2.1213 12 1 6.6753 0.8229 -1.6366 13 6 6.1760 1.7525 -3.5019 14 7 5.4208 2.6723 -4.0639 15 14 7.0572 0.4917 -4.5618 16 1 7.8365 -0.4269 -3.6935 17 1 6.0587 -0.2882 -5.3364 18 1 7.9762 1.1875 -5.4979 19 6 6.1480 4.1627 -1.9504 20 6 4.7819 4.8504 -1.9888 21 6 7.1099 4.9866 -1.0922 22 6 3.4345 1.3029 -0.0065 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2244 2.3566 -0.0014 27 1 0.9868 5.1897 -1.0291 28 1 0.2279 4.7232 0.5120 29 1 1.7430 5.6574 0.5129 30 1 5.9582 1.7636 0.4351 31 1 5.8238 3.5316 0.5916 32 1 5.3220 2.6957 -5.0286 33 1 6.5428 4.0820 -2.9632 34 1 4.3871 4.9310 -0.9760 35 1 4.8888 5.8470 -2.4171 36 1 4.0965 4.2634 -2.6002 37 1 8.0832 4.4967 -1.0648 38 1 7.2171 5.9829 -1.5211 39 1 6.7152 5.0673 -0.0794 40 1 4.0432 0.4108 -0.0116 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168893397.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:53 Heat of formation + Delta-G solvation = 19.076419 kcal Electronic energy + Delta-G solvation = -20969.830466 eV Core-core repulsion = 17978.984142 eV Total energy + Delta-G solvation = -2990.846323 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13075 -38.05393 -36.28960 -32.80700 -31.84082 -30.90922 -29.99215 -27.70490 -27.25071 -25.77745 -25.53026 -23.05950 -21.59207 -21.07969 -18.98122 -17.27684 -16.90709 -16.19959 -15.58967 -15.16780 -14.71399 -14.15248 -13.89749 -13.75934 -13.65395 -13.42286 -12.77976 -12.43582 -12.27865 -12.07554 -11.97545 -11.67630 -11.47723 -11.18765 -11.08786 -10.89727 -10.79316 -10.74106 -10.49599 -10.07100 -9.80474 -9.65055 -9.39249 -8.62256 -8.41568 -8.18929 -8.14883 -6.66831 -5.79823 -3.22681 1.76547 2.00356 3.36877 3.45052 3.45513 3.47345 4.35429 4.54312 4.85260 5.02297 5.19296 5.24900 5.32442 5.39171 5.50424 5.61590 5.70538 5.88362 5.92125 5.99315 6.08313 6.21361 6.35208 6.49353 6.54144 6.59484 6.63432 6.71535 6.79756 6.95926 7.04510 7.15540 7.26200 7.41788 7.66406 7.77463 7.95221 8.02410 8.48512 8.82788 9.22873 9.83707 10.38181 11.25049 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.016672 B = 0.007842 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.010792 B = 3569.852281 C = 4539.647305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.161 3.839 4 C -0.283 4.283 5 C 0.154 3.846 6 C -0.098 4.098 7 N -0.489 5.489 8 C 0.171 3.829 9 C 0.184 3.816 10 N -0.565 5.565 11 C -0.257 4.257 12 H 0.068 0.932 13 C 0.008 3.992 14 N -0.883 5.883 15 Si 0.900 3.100 16 H -0.276 1.276 17 H -0.291 1.291 18 H -0.288 1.288 19 C 0.182 3.818 20 C -0.161 4.161 21 C -0.162 4.162 22 C -0.194 4.194 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.052 0.948 26 H 0.124 0.876 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.253 0.747 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.014 0.986 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.038 0.962 39 H 0.041 0.959 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.181 0.752 8.351 11.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.109 3.891 4 C -0.305 4.305 5 C 0.015 3.985 6 C -0.155 4.155 7 N -0.203 5.203 8 C 0.032 3.968 9 C 0.056 3.944 10 N -0.283 5.283 11 C -0.386 4.386 12 H 0.086 0.914 13 C -0.192 4.192 14 N -0.526 5.526 15 Si 0.729 3.271 16 H -0.201 1.201 17 H -0.218 1.218 18 H -0.215 1.215 19 C 0.076 3.924 20 C -0.219 4.219 21 C -0.221 4.221 22 C -0.216 4.216 23 H 0.072 0.928 24 H 0.114 0.886 25 H 0.071 0.929 26 H 0.142 0.858 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.033 0.967 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.667 1.353 8.147 11.269 hybrid contribution -0.633 -1.471 -1.021 1.899 sum -8.300 -0.118 7.126 10.940 Atomic orbital electron populations 1.22993 0.78916 1.03445 1.01215 1.86043 1.21018 1.27193 1.88505 1.19324 0.92555 0.83862 0.93402 1.21673 1.00142 0.92967 1.15699 1.20950 0.90616 0.93877 0.93075 1.20631 0.98112 0.94112 1.02684 1.67413 1.05263 1.32036 1.15593 1.22641 0.99451 0.86490 0.88254 1.20068 0.84458 1.00022 0.89859 1.44258 1.71407 1.02779 1.09897 1.19275 1.36677 0.94090 0.88604 0.91403 1.25126 0.98019 0.98111 0.97943 1.70087 1.37070 1.35663 1.09749 0.86271 0.79272 0.81002 0.80525 1.20089 1.21838 1.21509 1.20333 0.92770 0.82229 0.97079 1.22418 0.99827 0.97115 1.02577 1.22322 1.00379 0.99017 1.00362 1.21225 0.91088 1.00197 1.09061 0.92763 0.88571 0.92915 0.85802 0.90759 0.91696 0.90698 0.92101 0.92071 0.93735 0.89017 0.90766 0.96669 0.92240 0.93757 0.94270 0.94018 0.84932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.84 101.05 0.99 1.33 16 2 O -0.32 -5.32 10.51 -18.92 -0.20 -5.52 16 3 C 0.16 3.02 6.74 -38.82 -0.26 2.76 16 4 C -0.28 -4.82 8.74 -39.30 -0.34 -5.16 16 5 C 0.15 2.76 6.78 -82.63 -0.56 2.20 16 6 C -0.10 -1.34 10.17 36.01 0.37 -0.98 16 7 N -0.49 -10.00 6.81 -5.81 -0.04 -10.04 16 8 C 0.17 3.64 5.95 -82.63 -0.49 3.15 16 9 C 0.18 3.92 5.48 -5.19 -0.03 3.89 16 10 N -0.56 -13.90 2.40 -167.02 -0.40 -14.30 16 11 C -0.26 -6.88 9.57 -15.06 -0.14 -7.03 16 12 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 13 C 0.01 0.23 4.85 -17.43 -0.08 0.14 16 14 N -0.88 -25.29 10.40 55.49 0.58 -24.71 16 15 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 C 0.18 4.36 2.39 -67.93 -0.16 4.20 16 20 C -0.16 -3.77 8.12 37.16 0.30 -3.47 16 21 C -0.16 -3.27 9.14 37.15 0.34 -2.93 16 22 C -0.19 -4.01 9.68 -39.30 -0.38 -4.39 16 23 H 0.05 0.60 7.71 -51.93 -0.40 0.20 16 24 H 0.10 0.86 8.14 -51.92 -0.42 0.43 16 25 H 0.05 0.52 7.71 -51.93 -0.40 0.12 16 26 H 0.12 1.71 6.47 -52.49 -0.34 1.37 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.22 7.94 -51.93 -0.41 0.81 16 31 H 0.06 1.23 6.34 -51.93 -0.33 0.90 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.09 2.51 5.85 -51.93 -0.30 2.20 16 34 H 0.07 1.67 4.91 -51.93 -0.26 1.41 16 35 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 1.61 7.39 -51.93 -0.38 1.22 16 37 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.79 6.61 -51.93 -0.34 0.45 16 40 H 0.13 2.69 8.06 -52.49 -0.42 2.26 16 LS Contribution 320.58 15.07 4.83 4.83 Total: -1.00 -30.42 320.58 -6.81 -37.23 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.10 Total: 2.17 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -0.45 Total: -6.28 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.14 Total: -49.05 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.20 Total: -5.52 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.42 -6.81 -37.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168893397.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.308 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds