Wall clock time and date at job start Mon Mar 30 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35737 * 117.00148 * 2 1 4 4 C 1.39289 * 120.84298 * 359.97438 * 3 2 1 5 5 C 1.37950 * 119.08874 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.58514 * 179.97438 * 5 4 3 7 7 N 1.31976 * 120.82892 * 0.02562 * 5 4 3 8 8 C 1.31948 * 121.85842 * 0.02562 * 7 5 4 9 9 C 1.50707 * 119.58633 * 180.02562 * 8 7 5 10 10 N 1.46497 * 109.46633 * 274.99540 * 9 8 7 11 11 C 1.36939 * 119.99859 * 269.99611 * 10 9 8 12 12 H 1.08001 * 120.00564 * 330.52890 * 11 10 9 13 13 C 1.38819 * 120.00003 * 150.52664 * 11 10 9 14 14 N 1.31618 * 119.99646 * 341.60695 * 13 11 10 15 15 Si 1.86795 * 120.00101 * 161.60109 * 13 11 10 16 16 H 1.48494 * 109.47133 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46951 * 120.00203 * 15 13 11 18 18 H 1.48494 * 109.47498 * 240.00299 * 15 13 11 19 19 C 1.46502 * 120.00289 * 90.00292 * 10 9 8 20 20 C 1.52999 * 109.46672 * 298.24046 * 19 10 9 21 21 C 1.52994 * 109.47064 * 58.23963 * 19 10 9 22 22 C 1.37984 * 120.82540 * 0.26635 * 8 7 5 23 23 H 1.09000 * 109.47504 * 60.00268 * 1 2 3 24 24 H 1.09007 * 109.47165 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46938 * 299.99933 * 1 2 3 26 26 H 1.07994 * 120.45768 * 359.97438 * 4 3 2 27 27 H 1.09003 * 109.47091 * 270.01963 * 6 5 4 28 28 H 1.08997 * 109.47218 * 30.02593 * 6 5 4 29 29 H 1.09001 * 109.47069 * 150.02211 * 6 5 4 30 30 H 1.09001 * 109.46894 * 154.99541 * 9 8 7 31 31 H 1.08997 * 109.47059 * 34.99218 * 9 8 7 32 32 H 0.97001 * 119.99990 * 179.97438 * 14 13 11 33 33 H 1.08998 * 109.47003 * 178.24321 * 19 10 9 34 34 H 1.08998 * 109.47181 * 60.00384 * 20 19 10 35 35 H 1.09002 * 109.46566 * 179.97438 * 20 19 10 36 36 H 1.09000 * 109.47445 * 299.99859 * 20 19 10 37 37 H 1.08995 * 109.47567 * 60.00178 * 21 19 10 38 38 H 1.09002 * 109.47216 * 179.97438 * 21 19 10 39 39 H 1.08998 * 109.47503 * 300.00052 * 21 19 10 40 40 H 1.08001 * 120.45593 * 179.71121 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3886 -0.0005 5 6 1.9675 3.5980 0.0000 6 6 1.1766 4.8808 -0.0011 7 7 3.2864 3.6458 0.0005 8 6 4.0230 2.5510 0.0001 9 6 5.5257 2.6652 0.0013 10 7 6.0044 2.8234 -1.3742 11 6 6.3178 1.7194 -2.1213 12 1 6.6753 0.8229 -1.6366 13 6 6.1760 1.7525 -3.5019 14 7 5.4208 2.6723 -4.0639 15 14 7.0572 0.4917 -4.5618 16 1 7.8365 -0.4269 -3.6935 17 1 6.0587 -0.2882 -5.3364 18 1 7.9762 1.1875 -5.4979 19 6 6.1480 4.1627 -1.9504 20 6 4.7819 4.8504 -1.9888 21 6 7.1099 4.9866 -1.0922 22 6 3.4345 1.3029 -0.0065 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2244 2.3566 -0.0014 27 1 0.9868 5.1897 -1.0291 28 1 0.2279 4.7232 0.5120 29 1 1.7430 5.6574 0.5129 30 1 5.9582 1.7636 0.4351 31 1 5.8238 3.5316 0.5916 32 1 5.3220 2.6957 -5.0286 33 1 6.5428 4.0820 -2.9632 34 1 4.3871 4.9310 -0.9760 35 1 4.8888 5.8470 -2.4171 36 1 4.0965 4.2634 -2.6002 37 1 8.0832 4.4967 -1.0648 38 1 7.2171 5.9829 -1.5211 39 1 6.7152 5.0673 -0.0794 40 1 4.0432 0.4108 -0.0116 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168893397.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:52 Heat of formation + Delta-G solvation = 1.486158 kcal Electronic energy + Delta-G solvation = -20970.593237 eV Core-core repulsion = 17978.984142 eV Total energy + Delta-G solvation = -2991.609094 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.53674 -39.43143 -38.05311 -34.31476 -33.77388 -32.35729 -31.71748 -28.89563 -28.63299 -27.53801 -27.10835 -24.93382 -22.94776 -22.62944 -20.82397 -18.85491 -18.41236 -17.75281 -16.78733 -16.73381 -16.54508 -15.84242 -15.49536 -15.26149 -15.11574 -14.88656 -14.22337 -14.19443 -13.80254 -13.41889 -13.16604 -13.15018 -13.00272 -12.89372 -12.77809 -12.59090 -12.32048 -12.27700 -12.13059 -11.92282 -11.63326 -11.50991 -11.24362 -10.44382 -10.10843 -9.68174 -9.62893 -8.62248 -7.83745 -5.29486 0.30445 0.54219 1.44173 1.47065 1.56493 2.26170 2.51075 2.91450 3.31072 3.50946 3.78586 3.82484 4.03744 4.31608 4.34985 4.36242 4.42820 4.59700 4.65507 4.72255 4.75738 4.81522 4.84121 4.85993 4.95649 5.01438 5.13241 5.14336 5.22789 5.30902 5.35730 5.38972 5.49043 5.67284 5.79703 6.05197 6.10459 6.35951 6.46333 7.20779 7.33672 7.90523 8.39517 9.19181 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.016672 B = 0.007842 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.010792 B = 3569.852281 C = 4539.647305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.158 3.842 4 C -0.275 4.275 5 C 0.141 3.859 6 C -0.094 4.094 7 N -0.508 5.508 8 C 0.156 3.844 9 C 0.185 3.815 10 N -0.579 5.579 11 C -0.261 4.261 12 H 0.066 0.934 13 C -0.041 4.041 14 N -0.913 5.913 15 Si 0.957 3.043 16 H -0.266 1.266 17 H -0.299 1.299 18 H -0.290 1.290 19 C 0.178 3.822 20 C -0.141 4.141 21 C -0.149 4.149 22 C -0.222 4.222 23 H 0.059 0.941 24 H 0.123 0.877 25 H 0.073 0.927 26 H 0.162 0.838 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.245 0.755 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.024 0.976 36 H 0.017 0.983 37 H 0.042 0.958 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.741 1.058 9.606 13.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.105 3.895 4 C -0.296 4.296 5 C 0.003 3.997 6 C -0.151 4.151 7 N -0.223 5.223 8 C 0.017 3.983 9 C 0.058 3.942 10 N -0.298 5.298 11 C -0.391 4.391 12 H 0.084 0.916 13 C -0.238 4.238 14 N -0.557 5.557 15 Si 0.786 3.214 16 H -0.190 1.190 17 H -0.226 1.226 18 H -0.217 1.217 19 C 0.072 3.928 20 C -0.200 4.200 21 C -0.207 4.207 22 C -0.244 4.244 23 H 0.078 0.922 24 H 0.141 0.859 25 H 0.092 0.908 26 H 0.180 0.820 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.043 0.957 36 H 0.037 0.963 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.243 1.649 9.439 13.314 hybrid contribution -0.318 -1.604 -1.285 2.080 sum -9.562 0.045 8.154 12.566 Atomic orbital electron populations 1.23402 0.75968 1.05810 1.02441 1.86026 1.24035 1.26390 1.88107 1.19420 0.92195 0.85272 0.92663 1.22066 1.01989 0.91859 1.13704 1.21718 0.90151 0.96110 0.91746 1.20734 0.99072 0.91982 1.03324 1.67365 1.06732 1.31699 1.16488 1.22460 0.99330 0.87179 0.89345 1.20074 0.85105 1.00823 0.88191 1.44291 1.72654 1.02381 1.10501 1.19490 1.36037 0.94519 0.89081 0.91617 1.25746 0.99070 0.99994 0.99014 1.70247 1.38799 1.37501 1.09177 0.85369 0.78020 0.79093 0.78928 1.19038 1.22606 1.21692 1.20276 0.93576 0.82844 0.96081 1.22223 0.98761 0.96635 1.02334 1.22143 0.99170 0.99120 1.00304 1.21278 0.92591 0.99764 1.10734 0.92197 0.85889 0.90834 0.82044 0.90562 0.88166 0.90385 0.91559 0.90818 0.94574 0.92750 0.89604 0.95685 0.96331 0.93845 0.92471 0.92696 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.84 113.37 1.12 1.47 16 2 O -0.33 -10.72 10.51 -90.60 -0.95 -11.68 16 3 C 0.16 5.75 6.74 22.77 0.15 5.90 16 4 C -0.28 -8.69 8.74 22.45 0.20 -8.49 16 5 C 0.14 4.79 6.78 42.47 0.29 5.07 16 6 C -0.09 -2.29 10.17 71.24 0.72 -1.56 16 7 N -0.51 -20.39 6.81 -172.31 -1.17 -21.56 16 8 C 0.16 6.65 5.95 42.48 0.25 6.90 16 9 C 0.19 7.94 5.48 85.64 0.47 8.41 16 10 N -0.58 -28.90 2.40 -682.34 -1.64 -30.53 16 11 C -0.26 -14.29 9.57 84.03 0.80 -13.49 16 12 H 0.07 3.54 7.89 -2.91 -0.02 3.52 16 13 C -0.04 -2.32 4.85 84.86 0.41 -1.91 16 14 N -0.91 -54.06 10.40 21.65 0.23 -53.83 16 15 Si 0.96 45.62 29.59 68.60 2.03 47.65 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 18 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 19 C 0.18 8.63 2.39 44.99 0.11 8.74 16 20 C -0.14 -6.65 8.12 71.98 0.58 -6.06 16 21 C -0.15 -5.84 9.14 71.98 0.66 -5.18 16 22 C -0.22 -9.27 9.68 22.45 0.22 -9.06 16 23 H 0.06 1.14 7.71 -2.39 -0.02 1.12 16 24 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 25 H 0.07 1.17 7.71 -2.38 -0.02 1.15 16 26 H 0.16 3.75 6.47 -2.91 -0.02 3.73 16 27 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.10 1.72 8.08 -2.39 -0.02 1.70 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 2.69 7.94 -2.39 -0.02 2.68 16 31 H 0.07 2.91 6.34 -2.39 -0.02 2.89 16 32 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.05 3.06 5.85 -2.39 -0.01 3.05 16 34 H 0.09 3.82 4.91 -2.39 -0.01 3.81 16 35 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.02 0.98 7.39 -2.39 -0.02 0.97 16 37 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.05 1.99 6.61 -2.39 -0.02 1.97 16 40 H 0.12 5.18 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -67.54 320.58 5.49 -62.05 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 1.02 Total: 17.16 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 5.98 Total: -9.25 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -2.59 Total: -105.93 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.95 Total: -11.68 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -67.54 5.49 -62.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168893397.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.534 kcal (2) G-P(sol) polarization free energy of solvation -67.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds