Wall clock time and date at job start Mon Mar 30 2020 07:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 116.99609 * 2 1 4 4 C 1.38749 * 120.47659 * 0.02562 * 3 2 1 5 5 N 1.31811 * 120.67912 * 179.97438 * 4 3 2 6 6 C 1.31871 * 121.78643 * 0.02562 * 5 4 3 7 7 C 1.38220 * 120.88687 * 0.02562 * 6 5 4 8 8 C 1.38582 * 119.21696 * 359.67438 * 7 6 5 9 9 C 1.50705 * 120.80955 * 180.32019 * 8 7 6 10 10 H 1.09005 * 109.47040 * 220.27066 * 9 8 7 11 11 C 1.53005 * 109.47210 * 100.27349 * 9 8 7 12 12 N 1.46901 * 109.47080 * 340.27036 * 9 8 7 13 13 C 1.46900 * 110.99916 * 204.99911 * 12 9 8 14 14 C 1.52997 * 109.47048 * 180.02562 * 13 12 9 15 15 C 1.53003 * 109.47042 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46848 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00569 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99915 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00303 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99882 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47009 * 90.00482 * 20 18 16 22 22 H 1.48502 * 109.47364 * 210.00348 * 20 18 16 23 23 H 1.48504 * 109.47150 * 330.00385 * 20 18 16 24 24 H 1.08996 * 109.47352 * 299.99773 * 1 2 3 25 25 H 1.08999 * 109.47144 * 59.99798 * 1 2 3 26 26 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.65898 * 0.02562 * 4 3 2 28 28 H 1.07991 * 119.56248 * 179.97438 * 6 5 4 29 29 H 1.07990 * 120.38928 * 179.97438 * 7 6 5 30 30 H 1.08999 * 109.46373 * 300.00253 * 11 9 8 31 31 H 1.09003 * 109.46882 * 59.99757 * 11 9 8 32 32 H 1.08990 * 109.47084 * 180.02562 * 11 9 8 33 33 H 1.00893 * 111.00195 * 328.95387 * 12 9 8 34 34 H 1.09006 * 109.47112 * 299.99985 * 13 12 9 35 35 H 1.09001 * 109.47061 * 59.99963 * 13 12 9 36 36 H 1.09006 * 109.46822 * 299.99759 * 14 13 12 37 37 H 1.08995 * 109.47293 * 60.00234 * 14 13 12 38 38 H 1.09006 * 109.46856 * 299.99420 * 15 14 13 39 39 H 1.08995 * 109.47145 * 59.99825 * 15 14 13 40 40 H 0.97000 * 120.00480 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2999 2.3809 0.0005 5 7 1.8941 3.5575 0.0010 6 6 3.2078 3.6723 0.0006 7 6 4.0179 2.5523 -0.0010 8 6 3.4344 1.2954 0.0047 9 6 4.2834 0.0502 0.0105 10 1 3.8402 -0.6948 -0.6504 11 6 4.3581 -0.5096 1.4325 12 7 5.6363 0.3780 -0.4586 13 6 6.2975 -0.8046 -1.0264 14 6 7.7011 -0.4248 -1.5023 15 6 8.3895 -1.6564 -2.0942 16 6 9.7723 -1.2824 -2.5624 17 1 10.1247 -0.2678 -2.4494 18 6 10.5871 -2.2354 -3.1359 19 7 11.7937 -1.9091 -3.5449 20 14 9.9773 -3.9902 -3.3320 21 1 9.3014 -4.1354 -4.6462 22 1 11.1288 -4.9252 -3.2616 23 1 9.0169 -4.3050 -2.2439 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.2213 2.3268 0.0014 28 1 3.6568 4.6544 0.0006 29 1 5.0928 2.6557 -0.0018 30 1 4.8012 0.2355 2.0933 31 1 3.3541 -0.7527 1.7804 32 1 4.9725 -1.4098 1.4367 33 1 5.6145 1.1350 -1.1252 34 1 6.3701 -1.5811 -0.2648 35 1 5.7156 -1.1763 -1.8698 36 1 7.6288 0.3517 -2.2638 37 1 8.2827 -0.0535 -0.6586 38 1 8.4618 -2.4333 -1.3330 39 1 7.8078 -2.0274 -2.9380 40 1 12.3671 -2.5795 -3.9481 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187034649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:35 Heat of formation + Delta-G solvation = -12.565134 kcal Electronic energy + Delta-G solvation = -19418.709620 eV Core-core repulsion = 16426.491216 eV Total energy + Delta-G solvation = -2992.218404 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.04582 -38.38614 -37.29641 -34.35617 -32.56678 -31.12624 -30.72850 -29.32705 -27.87451 -26.41029 -24.33273 -23.18257 -22.15449 -20.75599 -20.06701 -18.32267 -17.29709 -16.83186 -16.50201 -16.22004 -15.54052 -14.77104 -14.59939 -14.33518 -14.16344 -14.05320 -13.86031 -13.37984 -12.63574 -12.58690 -12.32521 -12.24500 -12.04649 -11.97108 -11.73945 -11.60036 -11.19833 -10.92116 -10.71338 -9.94734 -9.78027 -9.69192 -9.65262 -9.51334 -9.15550 -8.69281 -8.51877 -8.32436 -6.02186 -3.99888 0.89849 1.02213 2.85874 3.31743 3.39123 3.43060 3.55101 4.04430 4.25107 4.39673 4.46985 4.53946 4.68858 4.75661 4.84767 5.01316 5.11663 5.31130 5.31856 5.34974 5.45174 5.57790 5.64260 5.76010 5.81737 5.87420 5.99341 6.14992 6.25618 6.31829 6.55398 6.59527 6.88817 6.92604 7.17899 7.35986 7.43408 7.51961 7.71775 7.82293 8.56958 9.03394 9.60500 11.11409 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.030573 B = 0.003462 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.614840 B = 8085.837047 C = 8627.602955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.079 3.921 4 C 0.015 3.985 5 N -0.456 5.456 6 C 0.062 3.938 7 C -0.122 4.122 8 C -0.071 4.071 9 C 0.129 3.871 10 H 0.059 0.941 11 C -0.130 4.130 12 N -0.685 5.685 13 C 0.056 3.944 14 C -0.099 4.099 15 C -0.013 4.013 16 C -0.519 4.519 17 H 0.072 0.928 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.880 3.120 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.266 1.266 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.103 0.897 27 H 0.156 0.844 28 H 0.159 0.841 29 H 0.154 0.846 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.340 0.660 34 H 0.069 0.931 35 H 0.025 0.975 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.016 0.984 39 H 0.009 0.991 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.903 6.005 8.810 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.031 3.969 4 C -0.143 4.143 5 N -0.165 5.165 6 C -0.096 4.096 7 C -0.142 4.142 8 C -0.080 4.080 9 C 0.019 3.981 10 H 0.077 0.923 11 C -0.188 4.188 12 N -0.318 5.318 13 C -0.072 4.072 14 C -0.137 4.137 15 C -0.051 4.051 16 C -0.557 4.557 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.190 1.190 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.121 0.879 27 H 0.173 0.827 28 H 0.177 0.823 29 H 0.172 0.828 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.159 0.841 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.034 0.966 39 H 0.027 0.973 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.894 6.382 9.348 26.439 hybrid contribution -0.421 -1.665 -1.082 2.030 sum -24.315 4.717 8.265 26.111 Atomic orbital electron populations 1.23120 0.78156 1.04383 1.01460 1.86118 1.21431 1.25906 1.88414 1.19901 0.92516 0.85899 0.98625 1.22831 1.00329 0.87176 1.03994 1.67497 1.12495 1.26419 1.10130 1.22694 0.88731 0.99176 0.98977 1.22081 1.02623 0.91266 0.98198 1.19921 0.90565 0.96527 1.01004 1.20273 0.87672 0.92127 0.97991 0.92323 1.21707 1.01239 1.01234 0.94640 1.60734 1.16596 1.10139 1.44286 1.22215 0.96075 0.91812 0.97092 1.21443 0.92540 0.99720 0.99996 1.19542 0.96230 0.93867 0.95446 1.21154 0.97291 0.98086 1.39135 0.91009 1.25044 0.94746 0.98812 0.94997 1.69916 1.08347 1.34414 1.41730 0.86770 0.78505 0.85013 0.78934 1.20390 1.21406 1.19019 0.92444 0.92475 0.87882 0.82719 0.82343 0.82820 0.92000 0.92581 0.91915 0.84117 0.91254 0.95657 0.93058 0.91827 0.96598 0.97310 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 101.05 0.99 1.13 16 2 O -0.31 -3.10 9.86 -19.47 -0.19 -3.29 16 3 C 0.08 0.87 6.68 -39.07 -0.26 0.61 16 4 C 0.01 0.15 10.22 -17.37 -0.18 -0.03 16 5 N -0.46 -5.28 10.35 -13.13 -0.14 -5.42 16 6 C 0.06 0.64 11.18 -17.54 -0.20 0.44 16 7 C -0.12 -1.30 8.95 -39.46 -0.35 -1.66 16 8 C -0.07 -0.83 5.03 -104.17 -0.52 -1.36 16 9 C 0.13 1.62 2.56 -68.86 -0.18 1.44 16 10 H 0.06 0.79 7.59 -51.93 -0.39 0.39 16 11 C -0.13 -1.54 9.40 37.16 0.35 -1.19 16 12 N -0.69 -9.42 5.67 -107.94 -0.61 -10.03 16 13 C 0.06 0.91 5.48 -3.83 -0.02 0.89 16 14 C -0.10 -1.95 5.41 -26.73 -0.14 -2.10 16 15 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 16 C -0.52 -14.98 9.66 -34.44 -0.33 -15.32 16 17 H 0.07 2.22 7.99 -52.49 -0.42 1.81 16 18 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 20 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 24 H 0.06 0.27 7.68 -51.93 -0.40 -0.13 16 25 H 0.06 0.28 7.68 -51.93 -0.40 -0.12 16 26 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.16 1.19 6.32 -52.49 -0.33 0.85 16 28 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.15 1.52 6.81 -52.49 -0.36 1.16 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.76 7.45 -51.93 -0.39 0.37 16 33 H 0.34 4.41 7.01 -39.30 -0.28 4.13 16 34 H 0.07 1.13 7.44 -51.93 -0.39 0.74 16 35 H 0.03 0.41 8.06 -51.93 -0.42 -0.01 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 39 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 327.83 15.07 4.94 4.94 Total: -1.00 -32.51 327.83 -7.19 -39.70 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.24 Total: 0.01 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -1.05 Total: -15.73 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.03 Total: -42.92 kcal Atomic # 8 Polarization: -3.10 SS G_CDS: -0.19 Total: -3.29 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.51 -7.19 -39.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187034649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.136 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds