Wall clock time and date at job start Mon Mar 30 2020 06:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36000 * 116.99910 * 2 1 4 4 C 1.38686 * 119.95849 * 359.97438 * 3 2 1 5 5 C 1.38269 * 120.13593 * 180.02562 * 4 3 2 6 6 C 1.38622 * 120.05334 * 0.02562 * 5 4 3 7 7 N 1.40277 * 120.04261 * 179.97438 * 6 5 4 8 8 C 1.46899 * 111.00455 * 56.82662 * 7 6 5 9 9 C 1.50693 * 109.47441 * 167.44326 * 8 7 6 10 10 H 1.08003 * 120.00061 * 4.46502 * 9 8 7 11 11 C 1.37876 * 120.00238 * 184.45687 * 9 8 7 12 12 N 1.31519 * 119.99742 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00237 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.46872 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47184 * 120.00369 * 13 11 9 16 16 H 1.48499 * 109.46974 * 240.00321 * 13 11 9 17 17 C 1.46904 * 110.99746 * 292.87087 * 7 6 5 18 18 C 1.52996 * 109.47051 * 62.04155 * 17 7 6 19 19 C 1.52997 * 109.47271 * 302.03614 * 17 7 6 20 20 C 1.39434 * 119.91077 * 0.24730 * 6 5 4 21 21 N 1.39999 * 120.06621 * 179.75045 * 20 6 5 22 22 C 1.38657 * 119.87073 * 359.49714 * 20 6 5 23 23 H 1.09005 * 109.47136 * 300.00219 * 1 2 3 24 24 H 1.08992 * 109.46946 * 60.00211 * 1 2 3 25 25 H 1.08993 * 109.46977 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.93324 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.97533 * 179.97438 * 5 4 3 28 28 H 1.08999 * 109.46958 * 287.44916 * 8 7 6 29 29 H 1.09008 * 109.46735 * 47.44390 * 8 7 6 30 30 H 0.96994 * 119.99716 * 179.97438 * 12 11 9 31 31 H 1.09004 * 109.46672 * 182.03975 * 17 7 6 32 32 H 1.09005 * 109.46757 * 291.32375 * 18 17 7 33 33 H 1.09001 * 109.46988 * 171.32674 * 18 17 7 34 34 H 1.09000 * 109.47427 * 51.32365 * 18 17 7 35 35 H 1.08995 * 109.46971 * 183.27104 * 19 17 7 36 36 H 1.09006 * 109.47306 * 303.27329 * 19 17 7 37 37 H 1.09005 * 109.46781 * 63.26719 * 19 17 7 38 38 H 0.97005 * 120.00352 * 0.02562 * 21 20 6 39 39 H 0.97008 * 120.00338 * 180.02562 * 21 20 6 40 40 H 1.07997 * 120.03436 * 180.25854 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2903 2.3743 -0.0005 5 6 1.9141 3.6083 -0.0011 6 6 3.2982 3.6864 -0.0016 7 7 3.9309 4.9384 -0.0027 8 6 3.4991 5.7476 1.1448 9 6 4.4087 6.9403 1.2891 10 1 5.1808 7.1225 0.5562 11 6 4.2553 7.7991 2.3568 12 7 3.3153 7.5771 3.2494 13 14 5.3824 9.2780 2.5353 14 1 6.3483 9.3032 1.4078 15 1 4.5723 10.5225 2.5204 16 1 6.1222 9.1843 3.8195 17 6 3.6921 5.6477 -1.2668 18 6 2.1928 5.9027 -1.4332 19 6 4.1972 4.7959 -2.4330 20 6 4.0605 2.5189 -0.0068 21 7 5.4584 2.5941 -0.0127 22 6 3.4313 1.2833 -0.0009 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 0.2118 2.3158 -0.0005 27 1 1.3227 4.5119 -0.0019 28 1 2.4760 6.0880 0.9848 29 1 3.5437 5.1447 2.0518 30 1 3.2076 8.1811 4.0007 31 1 4.2234 6.5995 -1.2552 32 1 1.6794 4.9555 -1.5990 33 1 2.0285 6.5594 -2.2875 34 1 1.8022 6.3747 -0.5317 35 1 4.0732 5.3464 -3.3654 36 1 5.2523 4.5655 -2.2845 37 1 3.6260 3.8686 -2.4796 38 1 5.8977 3.4589 -0.0127 39 1 5.9879 1.7812 -0.0167 40 1 4.0192 0.3774 -0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213409996.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:53 Heat of formation + Delta-G solvation = 2.703852 kcal Electronic energy + Delta-G solvation = -20781.996794 eV Core-core repulsion = 17790.440503 eV Total energy + Delta-G solvation = -2991.556291 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.07590 -38.53707 -36.04707 -33.54517 -32.76193 -30.96426 -29.55940 -28.00823 -26.99579 -26.76010 -25.52674 -22.52481 -21.68866 -21.29583 -19.16920 -17.80114 -16.74103 -16.10826 -15.56080 -15.44220 -15.31806 -14.94602 -14.79069 -14.19255 -13.56186 -13.40264 -13.19335 -12.73110 -12.41680 -12.23740 -12.06235 -12.00286 -11.52430 -11.30852 -11.14656 -10.98293 -10.90168 -10.69021 -10.53256 -10.33704 -10.00541 -9.88581 -9.63577 -9.17495 -8.43653 -7.81758 -7.33449 -6.88521 -6.01677 -4.02946 1.92467 2.09306 3.30503 3.38304 3.42231 3.47435 4.30304 4.41585 4.51067 4.90578 5.12957 5.24254 5.33923 5.41652 5.44324 5.56810 5.62082 5.76042 5.85542 5.96957 6.04190 6.10753 6.22560 6.33267 6.36217 6.46809 6.55325 6.77783 6.80727 6.91175 6.94731 7.08541 7.39511 7.46307 7.71997 7.81435 7.96994 8.21093 8.23393 8.37259 8.71955 9.04272 9.60803 11.08769 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.024044 B = 0.005553 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.236710 B = 5040.670898 C = 5237.563340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.324 6.324 3 C 0.153 3.847 4 C -0.263 4.263 5 C -0.071 4.071 6 C 0.008 3.992 7 N -0.492 5.492 8 C 0.196 3.804 9 C -0.505 4.505 10 H 0.063 0.937 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.089 3.911 18 C -0.194 4.194 19 C -0.140 4.140 20 C 0.270 3.730 21 N -0.862 5.862 22 C -0.238 4.238 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.092 0.908 26 H 0.115 0.885 27 H 0.130 0.870 28 H 0.000 1.000 29 H 0.031 0.969 30 H 0.260 0.740 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.412 0.588 39 H 0.389 0.611 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.684 -11.108 -8.675 14.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.238 6.238 3 C 0.108 3.892 4 C -0.284 4.284 5 C -0.092 4.092 6 C -0.091 4.091 7 N -0.213 5.213 8 C 0.072 3.928 9 C -0.543 4.543 10 H 0.081 0.919 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.019 4.019 18 C -0.253 4.253 19 C -0.197 4.197 20 C 0.162 3.838 21 N -0.400 5.400 22 C -0.263 4.263 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.111 0.889 26 H 0.133 0.867 27 H 0.148 0.852 28 H 0.017 0.983 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.243 0.757 39 H 0.216 0.784 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.162 -11.257 -8.462 14.247 hybrid contribution -0.318 1.153 0.275 1.228 sum -2.480 -10.103 -8.187 13.238 Atomic orbital electron populations 1.22943 0.79059 1.03037 1.01356 1.86007 1.20858 1.27757 1.89185 1.18538 0.91534 0.83487 0.95657 1.20795 0.99076 0.92173 1.16387 1.21695 0.95078 0.97262 0.95179 1.18409 0.90096 0.91121 1.09452 1.60009 1.56713 1.00902 1.03677 1.19841 0.94625 0.91655 0.86686 1.21181 1.16337 1.07909 1.08913 0.91910 1.24968 0.95648 0.98148 0.95761 1.69972 1.32666 1.37854 1.13195 0.86484 0.80673 0.82511 0.77988 1.19705 1.21198 1.21110 1.21543 0.93938 0.97576 0.88801 1.22821 0.99204 1.01195 1.02030 1.21838 1.01207 0.99565 0.97119 1.17259 0.84325 0.91324 0.90907 1.42469 1.02801 1.11107 1.83643 1.19456 0.91562 0.96232 1.19024 0.92795 0.92946 0.88941 0.86668 0.85204 0.98264 0.95054 0.93026 0.89252 0.92367 0.93465 0.91165 0.93401 0.92615 0.93316 0.75679 0.78443 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -4.75 10.50 -19.74 -0.21 -4.96 16 3 C 0.15 2.50 6.68 -39.26 -0.26 2.24 16 4 C -0.26 -4.33 9.03 -39.40 -0.36 -4.69 16 5 C -0.07 -1.31 6.99 -39.43 -0.28 -1.59 16 6 C 0.01 0.15 3.25 -83.40 -0.27 -0.12 16 7 N -0.49 -10.17 3.68 -164.66 -0.61 -10.78 16 8 C 0.20 4.96 4.08 -4.98 -0.02 4.94 16 9 C -0.50 -13.73 8.60 -34.44 -0.30 -14.03 16 10 H 0.06 1.68 7.13 -52.48 -0.37 1.31 16 11 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 12 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 13 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.09 1.66 2.83 -67.71 -0.19 1.47 16 18 C -0.19 -3.43 7.48 37.16 0.28 -3.16 16 19 C -0.14 -2.21 8.93 37.16 0.33 -1.88 16 20 C 0.27 4.67 6.70 -83.53 -0.56 4.11 16 21 N -0.86 -12.78 9.09 32.53 0.30 -12.49 16 22 C -0.24 -3.90 9.83 -39.27 -0.39 -4.28 16 23 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 24 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.12 1.63 6.28 -52.48 -0.33 1.30 16 27 H 0.13 2.43 4.96 -52.49 -0.26 2.17 16 28 H 0.00 -0.01 5.25 -51.93 -0.27 -0.28 16 29 H 0.03 0.89 8.03 -51.92 -0.42 0.48 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.09 1.82 6.90 -51.93 -0.36 1.46 16 32 H 0.06 0.98 5.39 -51.93 -0.28 0.70 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.41 5.50 -51.93 -0.29 1.12 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.79 7.25 -51.93 -0.38 0.41 16 38 H 0.41 6.54 8.10 -40.82 -0.33 6.21 16 39 H 0.39 4.56 8.85 -40.82 -0.36 4.20 16 40 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 314.95 15.07 4.75 4.75 Total: -1.00 -29.98 314.95 -6.86 -36.84 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -5.69 Total: 10.16 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -1.11 Total: -14.19 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.43 Total: -48.96 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.21 Total: -4.96 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.98 -6.86 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213409996.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.547 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds