Wall clock time and date at job start Mon Mar 30 2020 06:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47239 * 2 1 4 4 O 1.42904 * 109.47218 * 240.00017 * 2 1 3 5 5 C 1.36000 * 117.00156 * 205.01688 * 4 2 1 6 6 C 1.38483 * 120.04312 * 354.50114 * 5 4 2 7 7 C 1.38843 * 119.94744 * 179.77431 * 6 5 4 8 8 N 1.39988 * 119.98153 * 180.25934 * 7 6 5 9 9 C 1.46499 * 119.99945 * 0.24675 * 8 7 6 10 10 C 1.46500 * 119.99724 * 180.25101 * 8 7 6 11 11 C 1.50709 * 109.47143 * 89.99805 * 10 8 7 12 12 H 1.08003 * 119.99873 * 359.97438 * 11 10 8 13 13 C 1.37873 * 120.00038 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99884 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99842 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47227 * 89.99569 * 15 13 11 17 17 H 1.48501 * 109.46792 * 209.99446 * 15 13 11 18 18 H 1.48495 * 109.47196 * 329.99505 * 15 13 11 19 19 C 1.38850 * 120.03134 * 0.50576 * 7 6 5 20 20 C 1.38203 * 120.08454 * 359.74974 * 19 7 6 21 21 C 1.38683 * 120.05309 * 0.02562 * 20 19 7 22 22 N 1.40284 * 120.01782 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.46736 * 59.99818 * 1 2 3 24 24 H 1.09000 * 109.46626 * 299.99934 * 1 2 3 25 25 H 1.08996 * 109.47218 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47243 * 119.99878 * 2 1 3 27 27 H 1.09002 * 109.46790 * 60.00209 * 3 2 1 28 28 H 1.08996 * 109.46921 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46984 * 300.00101 * 3 2 1 30 30 H 1.08002 * 120.02546 * 0.02878 * 6 5 4 31 31 H 1.09001 * 109.46769 * 90.00625 * 9 8 7 32 32 H 1.09005 * 109.46725 * 210.00481 * 9 8 7 33 33 H 1.09000 * 109.47290 * 330.00090 * 9 8 7 34 34 H 1.08999 * 109.47249 * 209.99534 * 10 8 7 35 35 H 1.08998 * 109.47348 * 330.00153 * 10 8 7 36 36 H 0.97002 * 119.99220 * 180.02562 * 14 13 11 37 37 H 1.07997 * 119.95356 * 179.72692 * 19 7 6 38 38 H 1.07998 * 119.97463 * 179.97438 * 20 19 7 39 39 H 0.97006 * 120.00324 * 180.02562 * 22 21 20 40 40 H 0.97006 * 120.00122 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 3.2475 -1.2255 -1.0977 6 6 4.0344 -1.0239 0.0238 7 6 5.2993 -1.5921 0.0942 8 7 6.0933 -1.3934 1.2299 9 6 5.5873 -0.5905 2.3460 10 6 7.4301 -1.9882 1.3022 11 6 8.4404 -1.0235 0.7366 12 1 8.1188 -0.0635 0.3605 13 6 9.7752 -1.3668 0.6984 14 7 10.1668 -2.5360 1.1560 15 14 11.0275 -0.1707 -0.0020 16 1 11.5390 0.7031 1.0843 17 1 12.1557 -0.9291 -0.5999 18 1 10.3835 0.6646 -1.0473 19 6 5.7791 -2.3531 -0.9634 20 6 4.9970 -2.5507 -2.0856 21 6 3.7312 -1.9887 -2.1577 22 7 2.9381 -2.1893 -3.2973 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 3.6629 -0.4287 0.8448 31 1 5.0627 -1.2367 3.0498 32 1 6.4218 -0.1044 2.8515 33 1 4.9011 0.1669 1.9670 34 1 7.6761 -2.2037 2.3420 35 1 7.4482 -2.9128 0.7253 36 1 11.1059 -2.7773 1.1293 37 1 6.7649 -2.7908 -0.9092 38 1 5.3721 -3.1426 -2.9074 39 1 2.0529 -1.7957 -3.3476 40 1 3.2749 -2.7215 -4.0350 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213563650.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:39 Heat of formation + Delta-G solvation = -8.284786 kcal Electronic energy + Delta-G solvation = -20263.044522 eV Core-core repulsion = 17271.011727 eV Total energy + Delta-G solvation = -2992.032794 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.89445 -37.74319 -35.89666 -33.17283 -32.79391 -32.24490 -29.70251 -27.62054 -27.50185 -27.20621 -24.66137 -22.69175 -22.49180 -20.41811 -19.98665 -17.69932 -16.53607 -16.36282 -16.08217 -15.30538 -15.09574 -14.65878 -14.47901 -14.04255 -13.76966 -13.49593 -13.10089 -12.79722 -12.56243 -12.31907 -12.13003 -12.04726 -11.76406 -11.57668 -11.34169 -11.25214 -10.93211 -10.75254 -10.68237 -10.52421 -10.34008 -10.18250 -9.88723 -9.46764 -8.45886 -8.03220 -7.61393 -6.16326 -5.73132 -4.11937 2.08871 2.52520 3.28830 3.35653 3.40675 3.50565 4.22752 4.44896 4.54320 4.62705 4.82733 4.95640 5.12496 5.26335 5.41430 5.46948 5.58635 5.68293 5.75842 5.81919 5.93689 6.04325 6.06564 6.11939 6.19097 6.21237 6.33055 6.39482 6.70845 6.96190 6.98527 7.30447 7.36422 7.42235 7.70572 7.86311 8.19869 8.22892 8.36663 8.38499 8.61999 8.98106 9.54772 11.00429 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.023390 B = 0.005142 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.784033 B = 5443.615644 C = 5961.360353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.082 3.918 3 C -0.179 4.179 4 O -0.318 6.318 5 C 0.095 3.905 6 C -0.262 4.262 7 C 0.226 3.774 8 N -0.620 5.620 9 C 0.103 3.897 10 C 0.252 3.748 11 C -0.528 4.528 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.896 5.896 15 Si 0.894 3.106 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.174 4.174 20 C -0.116 4.116 21 C 0.112 3.888 22 N -0.890 5.890 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.032 0.968 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.028 0.972 35 H 0.035 0.965 36 H 0.263 0.737 37 H 0.134 0.866 38 H 0.118 0.882 39 H 0.392 0.608 40 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.402 3.250 -2.783 16.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.025 3.975 3 C -0.236 4.236 4 O -0.233 6.233 5 C 0.047 3.953 6 C -0.286 4.286 7 C 0.120 3.880 8 N -0.329 5.329 9 C -0.042 4.042 10 C 0.132 3.868 11 C -0.567 4.567 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.535 5.535 15 Si 0.722 3.278 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.197 4.197 20 C -0.139 4.139 21 C 0.011 3.989 22 N -0.435 5.435 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.141 0.859 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.151 0.849 38 H 0.136 0.864 39 H 0.219 0.781 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -16.178 3.185 -2.628 16.697 hybrid contribution 0.805 0.737 -0.390 1.159 sum -15.373 3.923 -3.017 16.150 Atomic orbital electron populations 1.21833 0.93263 1.02736 1.02518 1.22240 0.94494 0.92527 0.88244 1.22369 1.02734 0.96209 1.02328 1.85944 1.30146 1.69115 1.38103 1.17989 0.84993 0.97815 0.94536 1.20446 0.96334 1.11635 1.00171 1.17496 0.89283 0.93407 0.87793 1.46952 1.16936 1.54583 1.14405 1.21392 0.99011 0.94302 0.89468 1.19221 0.76469 0.93702 0.97400 1.21622 0.91753 1.02771 1.40602 0.92309 1.24955 0.98381 0.95342 0.95407 1.69936 1.16485 1.20535 1.46588 0.86549 0.80893 0.81018 0.79323 1.20704 1.21133 1.19828 1.20629 1.01468 1.04245 0.93328 1.20174 0.92303 1.02587 0.98838 1.16790 0.92534 1.01485 0.88076 1.42015 1.19659 1.63270 1.18546 0.91840 0.90988 0.91925 0.91126 0.91607 0.91466 0.91906 0.85947 0.94997 0.91634 0.93227 0.95402 0.94687 0.92737 0.84859 0.86432 0.78072 0.78524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.56 37.16 0.36 -1.01 16 2 C 0.08 0.99 2.85 -26.73 -0.08 0.92 16 3 C -0.18 -2.04 9.17 37.16 0.34 -1.70 16 4 O -0.32 -4.81 9.04 -19.74 -0.18 -4.98 16 5 C 0.09 1.65 6.62 -39.10 -0.26 1.39 16 6 C -0.26 -4.76 7.41 -39.27 -0.29 -5.05 16 7 C 0.23 4.72 6.56 -83.68 -0.55 4.17 16 8 N -0.62 -13.54 3.00 -180.93 -0.54 -14.08 16 9 C 0.10 1.84 10.20 59.85 0.61 2.46 16 10 C 0.25 6.40 4.91 -5.19 -0.03 6.37 16 11 C -0.53 -14.56 9.39 -34.44 -0.32 -14.89 16 12 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.90 -25.86 13.29 55.43 0.74 -25.12 16 15 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.17 -3.61 9.20 -39.37 -0.36 -3.98 16 20 C -0.12 -2.08 9.89 -39.43 -0.39 -2.47 16 21 C 0.11 1.92 6.77 -83.44 -0.57 1.36 16 22 N -0.89 -12.05 9.11 32.56 0.30 -11.75 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.89 6.31 -51.92 -0.33 0.56 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.90 6.92 -51.93 -0.36 0.54 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.12 2.01 3.50 -52.49 -0.18 1.83 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 33 H 0.05 0.79 6.19 -51.93 -0.32 0.47 16 34 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.13 3.02 6.13 -52.49 -0.32 2.70 16 38 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.39 4.93 8.19 -40.82 -0.33 4.59 16 40 H 0.39 4.39 8.85 -40.82 -0.36 4.03 16 LS Contribution 324.72 15.07 4.89 4.89 Total: -1.00 -29.99 324.72 -7.32 -37.31 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.87 Total: 8.12 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -1.63 Total: -10.84 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.49 Total: -50.96 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.18 Total: -4.98 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.99 -7.32 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213563650.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.029 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds