Wall clock time and date at job start Mon Mar 30 2020 06:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35784 * 117.00143 * 2 1 4 4 N 1.32122 * 119.72348 * 0.02562 * 3 2 1 5 5 C 1.32017 * 121.72129 * 179.97438 * 4 3 2 6 6 C 1.38058 * 120.97279 * 0.02939 * 5 4 3 7 7 C 1.38750 * 119.35197 * 359.97242 * 6 5 4 8 8 C 1.38965 * 118.42038 * 359.75004 * 7 6 5 9 9 N 1.39971 * 120.51144 * 180.24365 * 8 7 6 10 10 C 1.46504 * 119.99702 * 0.27545 * 9 8 7 11 11 C 1.52997 * 109.46757 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.47024 * 299.99849 * 11 10 9 13 13 C 1.52995 * 109.47496 * 60.00077 * 11 10 9 14 14 C 1.52999 * 109.47053 * 180.02562 * 11 10 9 15 15 C 1.50696 * 109.47343 * 179.97438 * 14 11 10 16 16 H 1.08007 * 119.99824 * 359.97438 * 15 14 11 17 17 C 1.37878 * 120.00239 * 179.97438 * 15 14 11 18 18 N 1.31512 * 120.00085 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00285 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46983 * 59.99471 * 19 17 15 21 21 H 1.48496 * 109.47364 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46945 * 300.00166 * 19 17 15 23 23 H 1.08998 * 109.46946 * 300.00216 * 1 2 3 24 24 H 1.08999 * 109.47054 * 59.99700 * 1 2 3 25 25 H 1.08995 * 109.47439 * 179.97438 * 1 2 3 26 26 H 1.07996 * 119.51655 * 180.02562 * 5 4 3 27 27 H 1.08004 * 120.32340 * 180.02562 * 6 5 4 28 28 H 1.08000 * 120.79519 * 180.02562 * 7 6 5 29 29 H 0.96996 * 120.00102 * 180.27376 * 9 8 7 30 30 H 1.08994 * 109.46911 * 300.00083 * 10 9 8 31 31 H 1.08998 * 109.46809 * 59.99840 * 10 9 8 32 32 H 1.08997 * 109.47191 * 60.00188 * 12 11 10 33 33 H 1.09001 * 109.46737 * 180.02562 * 12 11 10 34 34 H 1.08998 * 109.47131 * 300.00174 * 12 11 10 35 35 H 1.08994 * 109.47188 * 59.99482 * 13 11 10 36 36 H 1.08993 * 109.47533 * 179.97438 * 13 11 10 37 37 H 1.08997 * 109.46867 * 299.99903 * 13 11 10 38 38 H 1.09008 * 109.47000 * 299.99719 * 14 11 10 39 39 H 1.08998 * 109.47388 * 59.99650 * 14 11 10 40 40 H 0.96993 * 120.00569 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 7 1.3205 2.3144 0.0005 5 6 1.8785 3.5109 0.0010 6 6 3.2516 3.6544 0.0005 7 6 4.0538 2.5224 -0.0001 8 6 3.4390 1.2761 0.0053 9 7 4.2061 0.1053 0.0101 10 6 5.6688 0.1880 0.0155 11 6 6.2592 -1.2235 0.0194 12 6 5.7859 -1.9709 1.2678 13 6 5.7955 -1.9738 -1.2307 14 6 7.7868 -1.1372 0.0258 15 6 8.3684 -2.5274 0.0302 16 1 7.7139 -3.3866 0.0290 17 6 9.7360 -2.7026 0.0357 18 7 10.5329 -1.6564 0.0366 19 14 10.4570 -4.4258 0.0419 20 1 10.0067 -5.1551 -1.1708 21 1 11.9396 -4.3421 0.0467 22 1 9.9976 -5.1502 1.2542 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.2517 4.3903 0.0019 27 1 3.6970 4.6384 0.0013 28 1 5.1304 2.6076 -0.0001 29 1 3.7692 -0.7607 0.0098 30 1 6.0059 0.7200 -0.8739 31 1 5.9990 0.7229 0.9059 32 1 4.6977 -2.0323 1.2637 33 1 6.2070 -2.9763 1.2707 34 1 6.1163 -1.4364 2.1584 35 1 6.1326 -1.4413 -2.1200 36 1 6.2165 -2.9791 -1.2282 37 1 4.7073 -2.0352 -1.2348 38 1 8.1243 -0.6046 -0.8634 39 1 8.1168 -0.6028 0.9166 40 1 11.4950 -1.7795 0.0409 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229683320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:20 Heat of formation + Delta-G solvation = -15.754602 kcal Electronic energy + Delta-G solvation = -19992.731634 eV Core-core repulsion = 17000.374924 eV Total energy + Delta-G solvation = -2992.356710 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.53514 -37.96280 -37.50548 -34.66436 -32.37544 -31.36175 -29.42046 -27.24076 -26.92288 -26.48628 -25.96348 -23.27189 -22.77650 -21.69481 -18.62600 -18.04810 -17.19448 -16.40283 -16.22039 -15.95402 -15.09600 -14.59517 -14.35108 -14.34733 -13.80750 -13.46839 -13.38594 -12.90388 -12.64388 -12.45313 -12.29776 -12.06840 -11.69044 -11.30562 -11.16191 -11.00949 -10.87492 -10.65399 -10.39354 -10.35355 -10.26912 -9.80799 -9.65343 -9.18626 -9.06912 -8.95694 -8.37700 -7.09571 -6.02308 -4.03253 1.37498 1.51197 3.16508 3.31165 3.36313 3.37996 3.63883 3.95870 4.43942 4.56730 4.94098 5.18672 5.20165 5.29704 5.33481 5.34899 5.45643 5.51330 5.58037 5.61339 5.77513 5.97659 6.11665 6.18598 6.27313 6.29983 6.39421 6.51932 6.64704 6.64926 7.02506 7.07297 7.08038 7.18288 7.53233 7.59712 7.72737 7.94134 7.96278 8.03127 8.39091 9.01080 9.60028 11.09206 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.034436 B = 0.004064 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.910326 B = 6887.474956 C = 7498.714485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.315 6.315 3 C 0.244 3.756 4 N -0.504 5.504 5 C 0.053 3.947 6 C -0.150 4.150 7 C -0.144 4.144 8 C 0.174 3.826 9 N -0.725 5.725 10 C 0.131 3.869 11 C -0.070 4.070 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.037 3.963 15 C -0.512 4.512 16 H 0.059 0.941 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.091 0.909 26 H 0.150 0.850 27 H 0.132 0.868 28 H 0.140 0.860 29 H 0.406 0.594 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.031 0.969 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.031 0.969 38 H 0.017 0.983 39 H 0.017 0.983 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.336 7.132 -0.068 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.223 6.223 3 C 0.059 3.941 4 N -0.227 5.227 5 C -0.102 4.102 6 C -0.171 4.171 7 C -0.174 4.174 8 C 0.065 3.935 9 N -0.354 5.354 10 C 0.007 3.993 11 C -0.071 4.071 12 C -0.184 4.184 13 C -0.184 4.184 14 C 0.000 4.000 15 C -0.550 4.550 16 H 0.077 0.923 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.109 0.891 26 H 0.168 0.832 27 H 0.150 0.850 28 H 0.158 0.842 29 H 0.243 0.757 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.728 6.859 -0.066 18.079 hybrid contribution 1.054 -0.948 0.005 1.418 sum -15.673 5.911 -0.061 16.751 Atomic orbital electron populations 1.22719 0.77757 1.02377 1.01975 1.86150 1.22379 1.24536 1.89191 1.19275 0.87590 0.85201 1.02054 1.67083 1.40267 0.98615 1.16735 1.21928 0.92778 0.93150 1.02385 1.21730 0.94461 0.98987 1.01946 1.20977 1.00800 0.89849 1.05806 1.17991 0.87771 0.89164 0.98566 1.44960 1.05700 1.05008 1.79777 1.21653 0.77893 0.99283 1.00476 1.20856 0.99661 0.91330 0.95204 1.21750 0.97866 1.01671 0.97125 1.21745 0.97894 1.01658 0.97109 1.19088 0.86147 0.97503 0.97311 1.21152 0.91179 0.92334 1.50316 0.92316 1.24997 0.97391 0.96522 0.95495 1.69941 1.03597 1.29102 1.50887 0.86710 0.77980 0.85053 0.78572 1.20309 1.21375 1.20305 0.92738 0.92743 0.89095 0.83228 0.85006 0.84214 0.75687 0.92501 0.92495 0.95031 0.91526 0.93477 0.93477 0.91528 0.95028 0.96421 0.96424 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.50 10.39 101.05 1.05 1.55 16 2 O -0.31 -4.44 9.75 -19.07 -0.19 -4.63 16 3 C 0.24 3.65 7.51 -16.95 -0.13 3.52 16 4 N -0.50 -7.08 9.22 -13.16 -0.12 -7.20 16 5 C 0.05 0.63 11.17 -17.54 -0.20 0.44 16 6 C -0.15 -1.72 10.10 -39.46 -0.40 -2.12 16 7 C -0.14 -1.92 9.42 -39.12 -0.37 -2.29 16 8 C 0.17 2.60 6.69 -83.39 -0.56 2.04 16 9 N -0.73 -11.09 5.14 -58.37 -0.30 -11.39 16 10 C 0.13 2.16 3.84 -4.04 -0.02 2.15 16 11 C -0.07 -1.33 0.54 -154.51 -0.08 -1.41 16 12 C -0.13 -2.30 8.05 37.16 0.30 -2.00 16 13 C -0.13 -2.30 8.05 37.16 0.30 -2.00 16 14 C 0.04 0.89 4.04 -27.89 -0.11 0.78 16 15 C -0.51 -13.51 7.65 -34.44 -0.26 -13.77 16 16 H 0.06 1.50 5.68 -52.48 -0.30 1.21 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.10 13.29 55.43 0.74 -25.37 16 19 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 24 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 28 H 0.14 1.77 6.88 -52.49 -0.36 1.40 16 29 H 0.41 6.21 5.55 -40.82 -0.23 5.98 16 30 H 0.06 0.94 7.98 -51.93 -0.41 0.53 16 31 H 0.06 0.95 8.00 -51.93 -0.42 0.53 16 32 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 33 H 0.07 1.30 6.61 -51.93 -0.34 0.95 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 37 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 38 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 323.54 15.07 4.88 4.88 Total: -1.00 -29.38 323.54 -6.64 -36.02 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.05 Total: 3.23 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -0.57 Total: -11.65 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.32 Total: -43.96 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.19 Total: -4.63 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.38 -6.64 -36.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229683320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.268 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds