Wall clock time and date at job start Mon Mar 30 2020 06:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36047 * 119.61399 * 2 1 4 4 C 1.35878 * 120.58579 * 180.02562 * 3 2 1 5 5 N 1.40318 * 120.08496 * 179.97438 * 4 3 2 6 6 C 1.46501 * 119.99525 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.46700 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47202 * 300.00098 * 7 6 5 9 9 C 1.53000 * 109.47328 * 59.99984 * 7 6 5 10 10 C 1.53002 * 109.47173 * 180.02562 * 7 6 5 11 11 C 1.50702 * 109.47305 * 180.02562 * 10 7 6 12 12 H 1.07997 * 119.99641 * 359.97438 * 11 10 7 13 13 C 1.37877 * 119.99719 * 179.97438 * 11 10 7 14 14 N 1.31509 * 120.00468 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99660 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47277 * 60.00271 * 15 13 11 17 17 H 1.48501 * 109.47281 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47359 * 300.00582 * 15 13 11 19 19 C 1.40613 * 119.82916 * 359.97438 * 4 3 2 20 20 C 1.36381 * 119.24871 * 359.97438 * 19 4 3 21 21 C 1.34633 * 119.61497 * 180.23568 * 2 1 3 22 22 O 1.22114 * 119.92528 * 0.02562 * 21 2 1 23 23 H 1.09004 * 109.47198 * 90.00380 * 1 2 3 24 24 H 1.08999 * 109.47326 * 210.00376 * 1 2 3 25 25 H 1.09001 * 109.47445 * 330.00254 * 1 2 3 26 26 H 1.08009 * 119.70901 * 359.97438 * 3 2 1 27 27 H 0.96995 * 119.99923 * 0.02606 * 5 4 3 28 28 H 1.08995 * 109.47347 * 300.00077 * 6 5 4 29 29 H 1.08997 * 109.47227 * 60.00364 * 6 5 4 30 30 H 1.09000 * 109.47390 * 60.00298 * 8 7 6 31 31 H 1.09004 * 109.47311 * 180.02562 * 8 7 6 32 32 H 1.08997 * 109.47078 * 300.00059 * 8 7 6 33 33 H 1.09001 * 109.46575 * 59.99888 * 9 7 6 34 34 H 1.09004 * 109.47286 * 179.97438 * 9 7 6 35 35 H 1.08995 * 109.46992 * 300.00102 * 9 7 6 36 36 H 1.09003 * 109.46661 * 299.99558 * 10 7 6 37 37 H 1.08997 * 109.47282 * 59.99833 * 10 7 6 38 38 H 0.96998 * 120.00285 * 179.97438 * 14 13 11 39 39 H 1.07988 * 120.37472 * 180.02562 * 19 4 3 40 40 H 1.08002 * 120.29038 * 179.97438 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1373 1.1828 0.0000 4 6 3.4958 1.2058 -0.0005 5 7 4.1785 2.4317 -0.0011 6 6 5.6434 2.4543 -0.0022 7 6 6.1310 3.9044 -0.0019 8 6 5.6089 4.6183 -1.2504 9 6 5.6109 4.6172 1.2480 10 6 7.6608 3.9281 -0.0038 11 6 8.1412 5.3565 -0.0029 12 1 7.4267 6.1664 -0.0016 13 6 9.4927 5.6293 -0.0037 14 7 10.3626 4.6431 -0.0058 15 14 10.0880 7.3999 -0.0033 16 1 9.5832 8.0917 1.2099 17 1 11.5729 7.4229 -0.0050 18 1 9.5813 8.0928 -1.2151 19 6 4.2159 -0.0020 -0.0005 20 6 3.5350 -1.1837 0.0005 21 6 2.1303 -1.1704 -0.0048 22 8 1.5113 -2.2230 -0.0096 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.5862 2.1117 -0.0004 27 1 3.6806 3.2641 -0.0007 28 1 6.0153 1.9461 0.8874 29 1 6.0139 1.9461 -0.8925 30 1 4.5190 4.6015 -1.2496 31 1 5.9567 5.6514 -1.2505 32 1 5.9794 4.1105 -2.1409 33 1 5.9828 4.1086 2.1374 34 1 5.9587 5.6503 1.2484 35 1 4.5211 4.6003 1.2488 36 1 8.0331 3.4195 0.8856 37 1 8.0310 3.4205 -0.8944 38 1 11.3134 4.8350 -0.0067 39 1 5.2957 0.0060 -0.0005 40 1 4.0711 -2.1213 0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229691836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:22 Heat of formation + Delta-G solvation = -10.750337 kcal Electronic energy + Delta-G solvation = -19766.569265 eV Core-core repulsion = 16774.429556 eV Total energy + Delta-G solvation = -2992.139709 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.14906 -38.23003 -36.68446 -35.11310 -33.15311 -32.10782 -29.14435 -27.51609 -26.91010 -26.54389 -25.58118 -23.80837 -23.00036 -21.54844 -18.55806 -17.52466 -17.32803 -16.38155 -16.31731 -15.97129 -15.28292 -14.60366 -14.35003 -14.30822 -14.09223 -13.29712 -13.25538 -13.02638 -12.82492 -12.78423 -12.40687 -12.11445 -11.91761 -11.81962 -11.17567 -11.04231 -10.90817 -10.67621 -10.44394 -10.30605 -10.19363 -9.89120 -9.86254 -9.25651 -9.11390 -8.99344 -8.40732 -6.90067 -6.05232 -4.06480 0.80853 2.09886 2.68202 3.28506 3.34212 3.35376 3.71503 3.74634 4.41130 4.61337 4.72357 4.93659 5.09435 5.13291 5.19262 5.30543 5.41814 5.46712 5.54437 5.70714 5.77621 6.00700 6.04726 6.11304 6.12749 6.22094 6.33385 6.45095 6.59162 6.60378 6.98292 7.02858 7.05008 7.13639 7.46329 7.56555 7.69404 7.91233 7.93190 8.14232 8.35609 8.98029 9.57046 11.06211 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.047612 B = 0.003531 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.946675 B = 7927.155245 C = 8313.434737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.480 5.480 3 C -0.002 4.002 4 C 0.127 3.873 5 N -0.741 5.741 6 C 0.136 3.864 7 C -0.070 4.070 8 C -0.125 4.125 9 C -0.125 4.125 10 C 0.036 3.964 11 C -0.513 4.513 12 H 0.059 0.941 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.888 3.112 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.047 4.047 20 C -0.212 4.212 21 C 0.497 3.503 22 O -0.576 6.576 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.153 0.847 27 H 0.398 0.602 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.030 0.970 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.261 0.739 39 H 0.139 0.861 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.677 -4.602 0.096 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.194 5.194 3 C -0.133 4.133 4 C 0.022 3.978 5 N -0.376 5.376 6 C 0.012 3.988 7 C -0.070 4.070 8 C -0.183 4.183 9 C -0.183 4.183 10 C -0.001 4.001 11 C -0.551 4.551 12 H 0.077 0.923 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.717 3.283 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.072 4.072 20 C -0.234 4.234 21 C 0.299 3.701 22 O -0.462 6.462 23 H 0.088 0.912 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.170 0.830 27 H 0.234 0.766 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.157 0.843 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.686 -5.333 0.095 16.568 hybrid contribution 0.417 1.450 -0.020 1.509 sum -15.269 -3.883 0.074 15.755 Atomic orbital electron populations 1.22002 0.77742 1.04351 1.03312 1.44787 1.08455 1.06076 1.60052 1.20722 0.91734 0.89474 1.11361 1.17014 0.89957 0.87762 1.03107 1.44694 1.05960 1.03370 1.83540 1.21546 0.78159 0.98885 1.00195 1.20847 1.00005 0.91101 0.95095 1.21737 0.97492 1.01846 0.97202 1.21735 0.97498 1.01848 0.97189 1.19089 0.86248 0.97448 0.97322 1.21146 0.91327 0.92177 1.50445 0.92335 1.25000 0.97109 0.96820 0.95481 1.69938 1.01726 1.31021 1.50772 0.86716 0.77643 0.85431 0.78554 1.20308 1.21370 1.20314 1.21399 1.01205 0.90897 0.93650 1.22057 0.92908 0.99467 1.08985 1.17014 0.89241 0.82866 0.80989 1.90934 1.69928 1.29740 1.55552 0.91155 0.89209 0.90140 0.83004 0.76557 0.92834 0.92832 0.95139 0.91631 0.93475 0.93475 0.91630 0.95136 0.96439 0.96435 0.92950 0.84292 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 10.36 59.85 0.62 1.19 16 2 N -0.48 -5.58 2.99 -126.98 -0.38 -5.96 16 3 C 0.00 -0.02 10.13 -16.53 -0.17 -0.19 16 4 C 0.13 1.51 6.62 -83.92 -0.56 0.95 16 5 N -0.74 -9.08 5.16 -58.78 -0.30 -9.38 16 6 C 0.14 2.01 3.83 -4.04 -0.02 2.00 16 7 C -0.07 -1.22 0.54 -154.51 -0.08 -1.31 16 8 C -0.13 -2.08 8.05 37.16 0.30 -1.78 16 9 C -0.13 -2.07 8.05 37.16 0.30 -1.77 16 10 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 11 C -0.51 -13.16 7.65 -34.44 -0.26 -13.42 16 12 H 0.06 1.45 5.68 -52.49 -0.30 1.15 16 13 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -25.69 13.29 55.43 0.74 -24.95 16 15 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.05 -0.57 9.34 -39.36 -0.37 -0.94 16 20 C -0.21 -2.71 9.98 -39.41 -0.39 -3.11 16 21 C 0.50 7.20 7.40 -15.48 -0.11 7.09 16 22 O -0.58 -10.16 16.64 4.81 0.08 -10.08 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.09 0.85 7.39 -51.93 -0.38 0.46 16 25 H 0.08 0.45 8.02 -51.93 -0.42 0.04 16 26 H 0.15 1.16 8.04 -52.48 -0.42 0.74 16 27 H 0.40 4.47 6.17 -40.82 -0.25 4.22 16 28 H 0.05 0.81 7.97 -51.93 -0.41 0.40 16 29 H 0.05 0.81 7.98 -51.93 -0.41 0.40 16 30 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 31 H 0.06 1.19 6.62 -51.93 -0.34 0.85 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.19 6.62 -51.93 -0.34 0.85 16 35 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.14 1.56 6.84 -52.49 -0.36 1.20 16 40 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 322.49 15.07 4.86 4.86 Total: -1.00 -30.80 322.49 -7.01 -37.81 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.03 Total: 1.12 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -0.95 Total: -9.11 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.05 Total: -40.29 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.80 -7.01 -37.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229691836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.057 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds