Wall clock time and date at job start Mon Mar 30 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47134 * 2 1 4 4 C 1.53007 * 109.47118 * 174.99982 * 3 2 1 5 5 C 1.52997 * 109.46958 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46972 * 299.99493 * 5 4 3 7 7 C 1.50702 * 109.46689 * 180.02562 * 6 5 4 8 8 N 1.29949 * 126.29388 * 300.02712 * 7 6 5 9 9 O 1.21294 * 110.25530 * 179.69098 * 8 7 6 10 10 C 1.33648 * 109.80818 * 0.46282 * 9 8 7 11 11 C 1.50697 * 126.54740 * 179.80345 * 10 9 8 12 12 C 1.50700 * 109.47266 * 269.69029 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47021 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47081 * 119.99727 * 16 14 12 19 19 H 1.48501 * 109.47213 * 240.00099 * 16 14 12 20 20 N 1.31123 * 106.89793 * 359.54329 * 10 9 8 21 21 C 1.52997 * 109.46913 * 60.00998 * 6 5 4 22 22 C 1.53001 * 109.47369 * 294.99960 * 3 2 1 23 23 H 1.09003 * 109.46671 * 59.99659 * 1 2 3 24 24 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47252 * 299.99934 * 1 2 3 26 26 H 1.09004 * 109.46738 * 240.00130 * 2 1 3 27 27 H 1.08997 * 109.47020 * 120.00138 * 2 1 3 28 28 H 1.09002 * 109.47246 * 55.00488 * 3 2 1 29 29 H 1.09003 * 109.47146 * 59.99960 * 4 3 2 30 30 H 1.09002 * 109.46859 * 300.00224 * 4 3 2 31 31 H 1.09005 * 109.46962 * 180.02562 * 5 4 3 32 32 H 1.08992 * 109.47445 * 60.00415 * 5 4 3 33 33 H 1.08993 * 109.47392 * 300.00346 * 6 5 4 34 34 H 1.09004 * 109.47205 * 149.69122 * 11 10 9 35 35 H 1.08997 * 109.47395 * 29.69614 * 11 10 9 36 36 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.47624 * 59.99490 * 21 6 5 38 38 H 1.08995 * 109.47237 * 179.97438 * 21 6 5 39 39 H 1.09003 * 109.46971 * 300.00087 * 22 3 2 40 40 H 1.09001 * 109.47226 * 60.00266 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5649 1.4442 0.1257 5 6 4.0748 2.8868 0.1264 6 6 3.6701 3.5713 -1.1808 7 6 4.1729 4.9919 -1.1803 8 7 3.8637 5.9171 -0.3217 9 8 4.4384 6.9503 -0.5925 10 6 5.1840 6.7800 -1.6886 11 6 6.0478 7.8186 -2.3566 12 6 5.2385 8.5538 -3.3936 13 1 4.2021 8.2951 -3.5528 14 6 5.8212 9.5566 -4.1393 15 7 7.0818 9.8752 -3.9416 16 14 4.8177 10.4683 -5.4242 17 1 3.4345 9.9282 -5.4469 18 1 4.7796 11.9143 -5.0880 19 1 5.4414 10.2869 -6.7597 20 7 5.0246 5.5352 -2.0684 21 6 2.1453 3.5696 -1.3064 22 6 1.6353 2.1265 -1.3073 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6055 1.9815 0.8419 29 1 3.9995 0.9052 -0.7161 30 1 3.8532 0.9569 1.0571 31 1 5.1612 2.8880 0.2155 32 1 3.6403 3.4254 0.9684 33 1 4.1047 3.0326 -2.0227 34 1 6.8965 7.3312 -2.8365 35 1 6.4095 8.5253 -1.6098 36 1 7.4917 10.5804 -4.4665 37 1 1.7107 4.1082 -0.4645 38 1 1.8569 4.0576 -2.2374 39 1 2.0699 1.5875 -2.1492 40 1 0.5490 2.1253 -1.3969 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232885690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:17 Heat of formation + Delta-G solvation = 17.511260 kcal Electronic energy + Delta-G solvation = -19744.757737 eV Core-core repulsion = 16753.843543 eV Total energy + Delta-G solvation = -2990.914194 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.70860 -39.16614 -35.50491 -34.31680 -33.32632 -31.73977 -30.90206 -29.22765 -28.27441 -24.67658 -24.02595 -22.87879 -22.42531 -21.52744 -20.21202 -19.38137 -17.39540 -16.73570 -16.23993 -15.63562 -14.98501 -14.76541 -14.39056 -14.16097 -13.73728 -13.59380 -13.16357 -12.94314 -12.49264 -12.34204 -12.18792 -11.93854 -11.75008 -11.44710 -11.29099 -11.20827 -11.02959 -10.92106 -10.78706 -10.69948 -10.57062 -10.32021 -10.18539 -10.11815 -10.02663 -9.74258 -8.87334 -8.61843 -6.25002 -4.30365 2.01666 3.02975 3.23094 3.30862 3.36398 3.83831 4.15120 4.32975 4.52693 4.54542 4.64710 4.80395 5.01287 5.06258 5.13397 5.21522 5.25658 5.34304 5.38970 5.42750 5.49356 5.55001 5.63309 5.74642 5.79244 5.89142 5.94012 6.02737 6.09977 6.11118 6.15510 6.21848 6.29130 6.44418 6.64611 6.76877 7.13197 7.20838 7.69000 7.92738 8.70238 9.01440 9.34438 10.85537 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.037759 B = 0.003635 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.372112 B = 7701.366504 C = 8103.499197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.090 4.090 4 C -0.111 4.111 5 C -0.110 4.110 6 C 0.011 3.989 7 C 0.163 3.837 8 N -0.407 5.407 9 O 0.057 5.943 10 C 0.236 3.764 11 C 0.100 3.900 12 C -0.522 4.522 13 H 0.061 0.939 14 C 0.065 3.935 15 N -0.888 5.888 16 Si 0.906 3.094 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.509 5.509 21 C -0.111 4.111 22 C -0.112 4.112 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.267 0.733 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.748 -16.549 7.169 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.109 4.109 4 C -0.148 4.148 5 C -0.148 4.148 6 C -0.009 4.009 7 C -0.110 4.110 8 N -0.121 5.121 9 O 0.003 5.997 10 C 0.018 3.982 11 C 0.062 3.938 12 C -0.561 4.561 13 H 0.080 0.920 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.733 3.267 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 N -0.243 5.243 21 C -0.149 4.149 22 C -0.149 4.149 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.064 -16.888 7.523 20.590 hybrid contribution -0.320 0.776 -0.810 1.166 sum -9.384 -16.112 6.713 19.817 Atomic orbital electron populations 1.21830 0.96037 1.01321 1.02006 1.21565 0.95806 0.96430 1.01857 1.21236 0.95551 0.95701 0.98365 1.21572 0.95140 0.96135 1.01985 1.21558 1.00999 0.95588 0.96658 1.19439 0.95794 0.85785 0.99851 1.25672 0.96250 0.98904 0.90183 1.74438 1.19120 0.94096 1.24427 1.85250 1.45084 1.30100 1.39218 1.30122 0.91144 0.93624 0.83322 1.18196 0.92321 0.88464 0.94842 1.20838 0.97576 1.18325 1.19374 0.92035 1.24934 0.95135 0.96497 0.97205 1.69937 1.11488 1.30591 1.40562 0.86297 0.80189 0.79373 0.80820 1.19582 1.20610 1.20628 1.71959 1.19136 1.06626 1.26533 1.21575 0.93498 0.97133 1.02724 1.21629 1.00726 0.95066 0.97477 0.92409 0.93056 0.92830 0.91999 0.92147 0.91093 0.91688 0.91759 0.91717 0.91285 0.88645 0.91401 0.92440 0.92328 0.91301 0.91625 0.91717 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 37.16 0.36 -0.76 16 2 C -0.12 -0.92 5.40 -26.73 -0.14 -1.06 16 3 C -0.09 -0.82 2.19 -90.62 -0.20 -1.02 16 4 C -0.11 -1.07 5.20 -26.73 -0.14 -1.21 16 5 C -0.11 -1.37 5.19 -26.73 -0.14 -1.51 16 6 C 0.01 0.17 2.66 -91.77 -0.24 -0.08 16 7 C 0.16 3.18 6.73 -156.37 -1.05 2.13 16 8 N -0.41 -8.39 12.16 30.90 0.38 -8.02 16 9 O 0.06 1.27 11.31 18.09 0.20 1.47 16 10 C 0.24 5.45 7.70 -13.06 -0.10 5.35 16 11 C 0.10 2.50 5.60 -29.04 -0.16 2.34 16 12 C -0.52 -14.19 9.09 -34.44 -0.31 -14.50 16 13 H 0.06 1.69 7.74 -52.49 -0.41 1.29 16 14 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -24.82 13.29 55.43 0.74 -24.08 16 16 Si 0.91 20.88 29.54 -169.99 -5.02 15.86 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 N -0.51 -11.38 11.55 -9.87 -0.11 -11.49 16 21 C -0.11 -1.45 5.19 -26.70 -0.14 -1.58 16 22 C -0.11 -1.11 4.96 -26.70 -0.13 -1.25 16 23 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.61 6.57 -51.93 -0.34 0.27 16 LS Contribution 325.51 15.07 4.91 4.91 Total: -1.00 -28.39 325.51 -7.98 -36.37 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -6.56 Total: -3.53 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.50 Total: -11.49 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 1.00 Total: -43.59 kcal Atomic # 8 Polarization: 1.27 SS G_CDS: 0.20 Total: 1.47 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.39 -7.98 -36.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232885690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.882 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds