Wall clock time and date at job start Mon Mar 30 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47134 * 2 1 4 4 C 1.53007 * 109.47118 * 174.99982 * 3 2 1 5 5 C 1.52997 * 109.46958 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46972 * 299.99493 * 5 4 3 7 7 C 1.50702 * 109.46689 * 180.02562 * 6 5 4 8 8 N 1.29949 * 126.29388 * 300.02712 * 7 6 5 9 9 O 1.21294 * 110.25530 * 179.69098 * 8 7 6 10 10 C 1.33648 * 109.80818 * 0.46282 * 9 8 7 11 11 C 1.50697 * 126.54740 * 179.80345 * 10 9 8 12 12 C 1.50700 * 109.47266 * 269.69029 * 11 10 9 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 11 10 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47021 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47081 * 119.99727 * 16 14 12 19 19 H 1.48501 * 109.47213 * 240.00099 * 16 14 12 20 20 N 1.31123 * 106.89793 * 359.54329 * 10 9 8 21 21 C 1.52997 * 109.46913 * 60.00998 * 6 5 4 22 22 C 1.53001 * 109.47369 * 294.99960 * 3 2 1 23 23 H 1.09003 * 109.46671 * 59.99659 * 1 2 3 24 24 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47252 * 299.99934 * 1 2 3 26 26 H 1.09004 * 109.46738 * 240.00130 * 2 1 3 27 27 H 1.08997 * 109.47020 * 120.00138 * 2 1 3 28 28 H 1.09002 * 109.47246 * 55.00488 * 3 2 1 29 29 H 1.09003 * 109.47146 * 59.99960 * 4 3 2 30 30 H 1.09002 * 109.46859 * 300.00224 * 4 3 2 31 31 H 1.09005 * 109.46962 * 180.02562 * 5 4 3 32 32 H 1.08992 * 109.47445 * 60.00415 * 5 4 3 33 33 H 1.08993 * 109.47392 * 300.00346 * 6 5 4 34 34 H 1.09004 * 109.47205 * 149.69122 * 11 10 9 35 35 H 1.08997 * 109.47395 * 29.69614 * 11 10 9 36 36 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 37 37 H 1.08993 * 109.47624 * 59.99490 * 21 6 5 38 38 H 1.08995 * 109.47237 * 179.97438 * 21 6 5 39 39 H 1.09003 * 109.46971 * 300.00087 * 22 3 2 40 40 H 1.09001 * 109.47226 * 60.00266 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5649 1.4442 0.1257 5 6 4.0748 2.8868 0.1264 6 6 3.6701 3.5713 -1.1808 7 6 4.1729 4.9919 -1.1803 8 7 3.8637 5.9171 -0.3217 9 8 4.4384 6.9503 -0.5925 10 6 5.1840 6.7800 -1.6886 11 6 6.0478 7.8186 -2.3566 12 6 5.2385 8.5538 -3.3936 13 1 4.2021 8.2951 -3.5528 14 6 5.8212 9.5566 -4.1393 15 7 7.0818 9.8752 -3.9416 16 14 4.8177 10.4683 -5.4242 17 1 3.4345 9.9282 -5.4469 18 1 4.7796 11.9143 -5.0880 19 1 5.4414 10.2869 -6.7597 20 7 5.0246 5.5352 -2.0684 21 6 2.1453 3.5696 -1.3064 22 6 1.6353 2.1265 -1.3073 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.6055 1.9815 0.8419 29 1 3.9995 0.9052 -0.7161 30 1 3.8532 0.9569 1.0571 31 1 5.1612 2.8880 0.2155 32 1 3.6403 3.4254 0.9684 33 1 4.1047 3.0326 -2.0227 34 1 6.8965 7.3312 -2.8365 35 1 6.4095 8.5253 -1.6098 36 1 7.4917 10.5804 -4.4665 37 1 1.7107 4.1082 -0.4645 38 1 1.8569 4.0576 -2.2374 39 1 2.0699 1.5875 -2.1492 40 1 0.5490 2.1253 -1.3969 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232885690.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:16 Heat of formation + Delta-G solvation = 2.015781 kcal Electronic energy + Delta-G solvation = -19745.429672 eV Core-core repulsion = 16753.843543 eV Total energy + Delta-G solvation = -2991.586128 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.42049 -40.10435 -36.97154 -35.98481 -34.83732 -33.38636 -31.83164 -30.53616 -29.84415 -26.04006 -25.70620 -24.15696 -23.66448 -22.71119 -21.16364 -20.53478 -19.23139 -18.43138 -18.21025 -16.82737 -16.53518 -15.80699 -15.42607 -15.19849 -15.11950 -14.53810 -14.48271 -14.22785 -14.14236 -13.76630 -13.25952 -13.17026 -13.01511 -12.82254 -12.65924 -12.50137 -12.36838 -12.20579 -12.15580 -12.06621 -11.90230 -11.74140 -11.61009 -11.35638 -11.08546 -10.96220 -10.69235 -10.60141 -8.32851 -6.46325 0.25450 1.33222 1.41859 1.43971 1.55872 2.02431 2.38392 2.72300 3.01954 3.19436 3.67960 3.70334 3.82307 4.06221 4.14946 4.24237 4.38805 4.40783 4.50088 4.53924 4.57280 4.70537 4.76221 4.81514 4.94655 4.98947 5.02867 5.07661 5.09766 5.17050 5.19602 5.20511 5.23221 5.27887 5.31650 5.38187 5.54053 5.57083 5.62545 5.86106 6.58213 7.22569 7.26690 8.78369 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.037759 B = 0.003635 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.372112 B = 7701.366504 C = 8103.499197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.087 4.087 4 C -0.104 4.104 5 C -0.104 4.104 6 C 0.009 3.991 7 C 0.172 3.828 8 N -0.412 5.412 9 O 0.046 5.954 10 C 0.228 3.772 11 C 0.110 3.890 12 C -0.544 4.544 13 H 0.052 0.948 14 C 0.021 3.979 15 N -0.916 5.916 16 Si 0.972 3.028 17 H -0.272 1.272 18 H -0.270 1.270 19 H -0.272 1.272 20 N -0.523 5.523 21 C -0.106 4.106 22 C -0.105 4.105 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.273 0.727 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.917 -18.024 6.933 21.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.106 4.106 4 C -0.142 4.142 5 C -0.143 4.143 6 C -0.011 4.011 7 C -0.102 4.102 8 N -0.127 5.127 9 O -0.004 6.004 10 C 0.009 3.991 11 C 0.071 3.929 12 C -0.582 4.582 13 H 0.070 0.930 14 C -0.179 4.179 15 N -0.554 5.554 16 Si 0.796 3.204 17 H -0.196 1.196 18 H -0.195 1.195 19 H -0.197 1.197 20 N -0.258 5.258 21 C -0.145 4.145 22 C -0.142 4.142 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.227 -18.350 7.303 22.241 hybrid contribution 0.050 1.193 -0.699 1.383 sum -10.178 -17.157 6.604 21.013 Atomic orbital electron populations 1.21839 0.95754 1.01852 1.01856 1.21523 0.96011 0.95155 1.02513 1.21214 0.95124 0.96699 0.97550 1.21556 0.95449 0.93915 1.03246 1.21531 1.00627 0.97305 0.94797 1.19779 0.96912 0.83025 1.01431 1.26537 0.94601 1.00436 0.88578 1.74431 1.19367 0.94015 1.24870 1.85239 1.45269 1.30935 1.38962 1.29736 0.91654 0.93737 0.83938 1.17904 0.92059 0.88555 0.94403 1.21037 0.97428 1.19265 1.20497 0.93010 1.25755 0.96169 0.97033 0.98992 1.70014 1.12780 1.31123 1.41479 0.85293 0.78490 0.78322 0.78316 1.19601 1.19534 1.19733 1.71964 1.19985 1.06464 1.27397 1.21548 0.92074 0.99306 1.01549 1.21608 1.01394 0.92794 0.98410 0.92562 0.92231 0.93010 0.91474 0.91380 0.91585 0.90795 0.90192 0.92357 0.92214 0.88066 0.92711 0.92921 0.91755 0.92284 0.92975 0.90901 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.67 71.98 0.70 -1.16 16 2 C -0.11 -1.42 5.40 30.59 0.17 -1.25 16 3 C -0.09 -1.38 2.19 -10.79 -0.02 -1.40 16 4 C -0.10 -1.75 5.20 30.60 0.16 -1.59 16 5 C -0.10 -2.47 5.19 30.59 0.16 -2.32 16 6 C 0.01 0.25 2.66 -11.54 -0.03 0.22 16 7 C 0.17 6.71 6.73 138.46 0.93 7.64 16 8 N -0.41 -17.09 12.16 -60.31 -0.73 -17.83 16 9 O 0.05 2.09 11.31 74.80 0.85 2.93 16 10 C 0.23 10.78 7.70 88.38 0.68 11.46 16 11 C 0.11 5.62 5.60 29.10 0.16 5.78 16 12 C -0.54 -30.04 9.09 25.60 0.23 -29.81 16 13 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 14 C 0.02 1.15 5.46 84.66 0.46 1.62 16 15 N -0.92 -51.41 13.29 21.45 0.28 -51.12 16 16 Si 0.97 42.57 29.54 68.60 2.03 44.60 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 N -0.52 -23.71 11.55 -303.19 -3.50 -27.21 16 21 C -0.11 -2.67 5.19 30.61 0.16 -2.51 16 22 C -0.10 -1.86 4.96 30.61 0.15 -1.71 16 23 H 0.06 0.68 6.56 -2.39 -0.02 0.67 16 24 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 2.79 8.14 -2.39 -0.02 2.78 16 34 H 0.05 2.92 8.14 -2.38 -0.02 2.90 16 35 H 0.05 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.25 6.57 -2.39 -0.02 1.23 16 Total: -1.00 -60.20 325.51 3.83 -56.37 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.00 Total: 7.28 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 3.91 Total: -15.02 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -3.95 Total: -96.16 kcal Atomic # 8 Polarization: 2.09 SS G_CDS: 0.85 Total: 2.93 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -60.20 3.83 -56.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232885690.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.387 kcal (2) G-P(sol) polarization free energy of solvation -60.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds