Wall clock time and date at job start Mon Mar 30 2020 06:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47043 * 2 1 4 4 C 1.52997 * 109.47159 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47330 * 185.00023 * 4 3 2 6 6 C 1.53007 * 109.47191 * 299.99699 * 5 4 3 7 7 C 1.52992 * 109.47077 * 300.00226 * 6 5 4 8 8 C 1.50701 * 109.46947 * 179.97438 * 7 6 5 9 9 N 1.30447 * 126.07442 * 300.03804 * 8 7 6 10 10 O 1.21281 * 110.68673 * 179.97438 * 9 8 7 11 11 C 1.34755 * 109.53441 * 0.02562 * 10 9 8 12 12 C 1.40338 * 126.79603 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99894 * 179.97438 * 12 11 10 14 14 C 1.40461 * 119.99832 * 359.96773 * 12 11 10 15 15 N 1.30503 * 119.99991 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99761 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46994 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47026 * 120.00202 * 16 14 12 19 19 H 1.48505 * 109.47114 * 240.00093 * 16 14 12 20 20 N 1.33330 * 106.40947 * 359.97438 * 11 10 9 21 21 C 1.52999 * 109.47294 * 59.99837 * 7 6 5 22 22 C 1.52998 * 109.47246 * 64.99984 * 4 3 2 23 23 H 1.08994 * 109.47290 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47108 * 299.99922 * 1 2 3 25 25 H 1.08999 * 109.47024 * 60.00002 * 1 2 3 26 26 H 1.09001 * 109.47108 * 240.00078 * 2 1 3 27 27 H 1.08999 * 109.47024 * 119.99998 * 2 1 3 28 28 H 1.09004 * 109.47826 * 60.00085 * 3 2 1 29 29 H 1.08998 * 109.47652 * 300.00180 * 3 2 1 30 30 H 1.08999 * 109.47059 * 305.00139 * 4 3 2 31 31 H 1.09004 * 109.47613 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.47565 * 60.00204 * 5 4 3 33 33 H 1.08998 * 109.46920 * 179.97438 * 6 5 4 34 34 H 1.09005 * 109.46428 * 60.00339 * 6 5 4 35 35 H 1.08999 * 109.47368 * 299.99809 * 7 6 5 36 36 H 0.97004 * 119.99892 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.47391 * 59.99986 * 21 7 6 38 38 H 1.09004 * 109.47119 * 180.02562 * 21 7 6 39 39 H 1.08999 * 109.47512 * 180.02562 * 22 4 3 40 40 H 1.08998 * 109.47186 * 299.99908 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8794 0.1251 6 6 3.5696 3.7070 -1.0563 7 6 4.0790 3.0976 -2.3638 8 6 3.5758 3.9124 -3.5274 9 7 2.3254 4.1263 -3.8316 10 8 2.2383 4.8204 -4.8224 11 6 3.4726 5.1296 -5.2659 12 6 3.7916 5.9138 -6.3852 13 1 4.8252 6.0930 -6.6421 14 6 2.7667 6.4656 -7.1713 15 7 1.5177 6.2494 -6.8605 16 14 3.1913 7.5088 -8.6615 17 1 4.6673 7.6021 -8.7960 18 1 2.6210 6.8840 -9.8819 19 1 2.6233 8.8703 -8.4907 20 7 4.3308 4.5439 -4.4304 21 6 3.5690 1.6606 -2.4896 22 6 4.0795 0.8330 -1.3083 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8899 30 1 3.9337 0.8529 0.8409 31 1 5.1701 2.8795 0.1242 32 1 3.7172 3.3137 1.0567 33 1 3.9326 4.7309 -0.9664 34 1 2.4796 3.7070 -1.0557 35 1 5.1690 3.0975 -2.3643 36 1 0.8099 6.6302 -7.4036 37 1 2.4790 1.6606 -2.4891 38 1 3.9323 1.2263 -3.4210 39 1 5.1695 0.8326 -1.3086 40 1 3.7162 -0.1907 -1.3978 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232913402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:03 Heat of formation + Delta-G solvation = 2.878604 kcal Electronic energy + Delta-G solvation = -20312.711211 eV Core-core repulsion = 17321.162498 eV Total energy + Delta-G solvation = -2991.548713 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.95558 -39.18217 -34.81883 -34.06830 -33.23092 -31.22436 -30.52029 -29.43629 -26.51763 -26.12661 -22.95815 -22.50899 -21.57851 -21.38051 -20.16209 -18.24625 -17.41495 -15.78130 -15.67151 -15.42721 -15.10537 -14.76057 -14.20348 -13.88095 -13.52633 -13.32306 -12.94000 -12.47931 -12.42293 -11.96382 -11.91321 -11.71746 -11.60781 -11.46694 -11.40772 -11.09319 -10.80171 -10.74705 -10.51836 -10.35869 -10.06224 -9.96595 -9.87646 -9.83356 -9.70572 -9.31788 -8.82865 -8.17664 -7.05447 -4.97822 2.79819 2.97609 3.05245 3.33779 3.75710 3.96766 4.72090 4.83351 4.94722 5.04650 5.09805 5.18931 5.28234 5.41038 5.48233 5.53075 5.57864 5.65974 5.72515 5.79144 5.81552 5.89290 5.92729 6.01239 6.09845 6.11292 6.15203 6.20983 6.31449 6.38698 6.39740 6.48739 6.55597 6.67858 6.73701 6.87482 6.96209 7.52408 7.95178 8.17050 8.37515 8.51985 9.94067 10.46584 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.035029 B = 0.004283 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.135370 B = 6536.154175 C = 6950.803321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.086 4.086 5 C -0.111 4.111 6 C -0.109 4.109 7 C 0.019 3.981 8 C 0.165 3.835 9 N -0.469 5.469 10 O 0.043 5.957 11 C 0.301 3.699 12 C -0.418 4.418 13 H 0.112 0.888 14 C 0.071 3.929 15 N -0.765 5.765 16 Si 0.935 3.065 17 H -0.255 1.255 18 H -0.269 1.269 19 H -0.269 1.269 20 N -0.616 5.616 21 C -0.109 4.109 22 C -0.112 4.112 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.291 0.709 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 -7.250 9.205 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.159 4.159 4 C -0.104 4.104 5 C -0.149 4.149 6 C -0.147 4.147 7 C -0.001 4.001 8 C -0.109 4.109 9 N -0.198 5.198 10 O -0.003 6.003 11 C 0.110 3.890 12 C -0.456 4.456 13 H 0.130 0.870 14 C -0.154 4.154 15 N -0.393 5.393 16 Si 0.758 3.242 17 H -0.179 1.179 18 H -0.194 1.194 19 H -0.194 1.194 20 N -0.360 5.360 21 C -0.147 4.147 22 C -0.150 4.150 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.157 -7.603 9.713 12.336 hybrid contribution 0.060 0.651 -0.905 1.117 sum 0.217 -6.952 8.808 11.223 Atomic orbital electron populations 1.21782 0.96227 1.01148 1.01913 1.21564 0.95572 0.97366 1.01639 1.21793 0.94997 0.96519 1.02636 1.21128 0.95518 0.96245 0.97507 1.21566 1.00404 0.94933 0.97978 1.21546 1.01566 0.98583 0.93010 1.19169 0.99728 0.92193 0.89028 1.24876 0.87469 1.00147 0.98392 1.74250 1.20782 1.18413 1.06370 1.85531 1.31532 1.51705 1.31546 1.24233 0.78444 0.92308 0.94025 1.18591 0.95739 1.26155 1.05122 0.87044 1.26183 0.94130 0.95586 0.99461 1.69646 1.00444 1.33454 1.35726 0.85811 0.80389 0.78968 0.79082 1.17874 1.19376 1.19382 1.72242 1.30742 1.23326 1.09676 1.21555 1.01600 0.93955 0.97590 1.21590 1.00299 0.98706 0.94391 0.93181 0.93033 0.92507 0.91825 0.92605 0.92434 0.90560 0.91714 0.92048 0.92199 0.92293 0.91146 0.90072 0.89820 0.91039 0.92315 0.92143 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.25 16 2 C -0.12 -1.35 5.69 -26.73 -0.15 -1.50 16 3 C -0.12 -1.50 3.98 -26.74 -0.11 -1.61 16 4 C -0.09 -1.03 2.66 -90.62 -0.24 -1.27 16 5 C -0.11 -1.44 5.45 -26.73 -0.15 -1.59 16 6 C -0.11 -1.84 4.91 -26.73 -0.13 -1.97 16 7 C 0.02 0.37 2.66 -91.78 -0.24 0.12 16 8 C 0.17 4.18 6.68 -156.78 -1.05 3.13 16 9 N -0.47 -12.78 12.15 31.51 0.38 -12.40 16 10 O 0.04 1.27 9.74 15.13 0.15 1.42 16 11 C 0.30 8.72 7.82 -16.35 -0.13 8.59 16 12 C -0.42 -11.25 9.48 -37.96 -0.36 -11.61 16 13 H 0.11 2.84 7.85 -52.49 -0.41 2.43 16 14 C 0.07 1.74 5.50 -17.28 -0.10 1.65 16 15 N -0.77 -19.74 12.06 55.57 0.67 -19.07 16 16 Si 0.93 17.80 29.56 -169.99 -5.03 12.77 16 17 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 18 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 20 N -0.62 -17.23 11.61 -11.50 -0.13 -17.37 16 21 C -0.11 -1.83 4.91 -26.73 -0.13 -1.96 16 22 C -0.11 -1.45 5.21 -26.73 -0.14 -1.59 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.71 6.56 -51.93 -0.34 0.37 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.13 4.82 -51.93 -0.25 0.88 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.26 6.54 -51.93 -0.34 0.92 16 35 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 36 H 0.29 6.61 8.29 -40.82 -0.34 6.27 16 37 H 0.07 1.28 6.32 -51.93 -0.33 0.95 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.73 6.56 -51.93 -0.34 0.39 16 LS Contribution 315.97 15.07 4.76 4.76 Total: -1.00 -29.77 315.97 -7.97 -37.74 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.22 Total: 2.98 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -2.55 Total: -10.84 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.92 Total: -48.83 kcal Atomic # 8 Polarization: 1.27 SS G_CDS: 0.15 Total: 1.42 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.77 -7.97 -37.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232913402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.620 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds